Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d039860_T009
CDS Infomation	cds chromosome:B73_RefGen_v4:3:16957547:16974531:-1 gene:Zm00001d039860 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase PRT6
Sequence	ATGTTCAAAAATGAACCAGCAGCAATGCTTGATGACCTGGAGCGTTCCAATGCAGGGGAG CGTGCTGTCTGTGGGTCTGTCTGGGGGCACAATGACGTTGCTTATCGCTGCCGGACTTGC GAGAGTGACCCCACATGTGCAATTTGTGTTCCGTGCTTCCAGAATGGCAATCACAAGGAT CATGATTACTCTATCATATATACAGGGGGTGGATGTTGTGATTGTGGTGATGCGACTGCT TGGAAGCGCGAGGGCTTCTGCTCAAAGCACAAGGGTGCTGAGCAGATCAAGCCTCTTCCA GTGGAGCTTGCGTGTTCTGTAGGACCTGTCCTGGATGTCCTCTTGCAGTTCTGGAAGGAG CGGATATGCCTGCTGGAACCACACCATGCAAAGGGTAGTGATGGTAGCTCGTGCAAGAGG ATTGCCGAAGAGTTGACAACTTCTATCTCTAGCATGCTGCTTGAGTTCTGCACACGCAGT GAAAACCTTCTTAGTTTTCTGTCCCTAAGAATCCGCGAGTTTCCTGATATGTTAGATGCA TTAATAAGGTCAGACAGGTTGCTTGACAAGAAGGTTGCCAGAAAATTGCATGAGTTTTTA TTGAAGCTTATCAGTGACCCTGCTTTTAAGTATGAGTTTGCCAAGGTTTTCATACACTAC TACCCTATCACATTTGGGGAAGTTATTAAAGGCTGTAATGATTCACTACTGGAAGACTAT CCACTGATGACAACTTTTTCTGTGCAAATATTCACTGTGCCTACATTGACTCCAAGGCTT GTGCGCGAGGTTGATTTGTTGGGTGTCCTCCTTGGATGCTTGACAGATCTGTTTCTCTCT TGCATCGGTGAGGATGGTCGTTTACAGACAAACAAATGGGGGAATTTATTTGATGCTTCT ATTCGATTACTGGATGATACACGCTATGTGTTGAGTCATGAAGAGGTGTCTAAGCATGTT GCTTATGGGAGGCCTGATCTAACTAGGTCATGGATTAAACTCTTATCACTTGTGCAAGGA ATGGATCCTCAGAAGAGAGTGACAAGTATTCACGCTGAAGATGAGAACGAGCATCTATCT GCGCCGTTTGTGCTGGGGCACTATCTTGGAATTGTCCAGAATCTTCTGATGAGGGGATCA TTTTCTCCTCCTGATCAACATGAATCAACTGATGTGACAGTTTGCTCCACTGCGATAAAA GGTGTGGAAAGTGCTGAAAATCAGCGGCATGCAAAAGTTGGGAGGGTCTCCCAGGAGAGT TCTGTATCCGATCTAAGTAGCAGAGACAGCTCTTTGTGCTGTGGATTGCCATCACCTGCT GCCTGGTTAGTTCTTCAATGCCTGAAAGCCATTGAAAGTTGGCTCTGGCTGGAAAACGAT ATAGCTCTGAGGAGCAAACTGTCATCCCTTGATGCTAGCAGCAATGATTCTCACAAACTT ATGGCTTTGCTTGAAGACCCGTTGACTTCTCTTACGGGAAACAGTTCAAATACAAATATG TGTGTGATGGACGTCAAGATAAATGAAGGATCACAAACAGATTGTACTGCAGATTATTAT GAGGCATCTAGTTCTCCTGTTCAAGGTCAAGGCCAAGAAGCGATGCCTCTGGTTAGTAAC AGTACAGGCAAAGGGAAGATGCATGGCAGCAGCAACAGTACAGTTGTACAGTTGCACCCT GAGGATGCCATTACTTATACTCTGACTGATGGTAGCATTTTGTATGCTCATCCAGATTCA AGAATCGAGGAACTAGGAATACTCAATACAAGAGGATGGCCTCATGTTGTCTTTGATGTC AGTTCACAAGAAACATCTTTCCATATCCCTTTGCACCGTATGCTTTCATTACTACTGCGG AAGGCTATGAAGAAATGTTTTGGAGAGGATGGACATTCAGATGTGCAATCCAATGAGTTC TTTCCTCAGATACTTAGAGGTTGTGAGCCCTATGGATTTGCTTCAATTGTTATGGAGCAT CCACTGAGAGTGAGAGTATTTTGTGCACAAGTGCGTGCTGGAATGTGGCGCAAGAACGGT GATGCAGCTATCCTGAGTGCGGAATGGTACCGCTCTGTGCAATGGTTTGAACAAGGTTTG GAGTCAGATCTGTTTCTGCTTCAATGCTGTGCTGCCCTATCTTCTCCAGAGTTATTTGTG CGGACAATTCAAGAGCGATTTGGTTTGTCCAGTTATACAGATTTGGGACTTGCAGAGCAA AATGAGTTTGAGTCAGTTTTAATGCAAGAAATGCTGATTTTTCTTATACAACTGGTTAAA GAACGCCGTTTTTGTGGGCTTTCCACAGCAGACAACTTGAGGAGAGAATTGATTTACAAG TTAGCTATTGGAGACGCCACTCATAGCCAAATTGTTAAGTCTCTTCCTCGCGATCTTTCG TCAAGTGACCAACTTCAAAATGTTCTAGATTCGTTGGCAGCTTATTCTAATCCATCTGGC ATGAAGCAGGATGTAGCCTCAAAATCTTCTGCCTCTGTAACTACAAGAAACAGATTTGGT CCCGTCGATTGTGATGGCATCCATATATCTTCTTGCGGACATGCTGTGCATCAGGAATGT CATGACCGATATTTGTTCTCCTTGAAACAAAGATATGTCCGGAGACTTGGTTTTGAAGGT GGTCATATAGTTGATCCTGATTTGGGAGAATTGCTTTGTCCAGTATGTCGCAGATTTGCA AATTCCATTCTCCCAGCATCACCTGATTTCTCGGGTAAAACATCAATGATGCTGAGACCA TTTGTTCAAACCTTGACACCTCAAGTTGTTACAACCACATCAGATGTGAATAGAAATTGC TTACAGTTCGCTCGCGCACTATCTCTTTTTGAAAGTGCTGGAAAAATCGTTGGAGAAACC AAGTTTTTAAAAGCTATATCTGGGAAGCTTAATGAAACTACAAATCCAGCCCTCGATCCT TGTCTTCGAAGATTGGCTATGCTTTACTATCCTCGCAGTCACAGCAGTTTTTCACCATCT AAGAGGCTCAACCCATCCTTATTTCTCTGGGATACACTAAGATACTCTCTGGTATCTACA GAAATTGCTTCTCGTGGTAGGATGTCAAGCCACTCTGCTGAATCGAAGTCCTGCTTGGAG TCTTTGCGTGGCGAACTTAATTCATCAAGTGGGTTCATATTGTCTCTCCTGTTCCATGCT GCCCACTCTGCACGGAATTTGAATCGTCTCGAGGTTCTTCTGAGGTTTGAAGGTATCCAA CTATTAGCAGGCTCTATTTGCTCTTGTATTTCGGGTTATAAAGACATTCTGAATGCCACT AAGCGAAAAGGCTCTTTGCCATCGATGGTTGATCCAGCCAGTGAGGGGGCCCTCTTTCCT GATGTACAATTTTGGAAACAATGTGCTGATCCAGTTCTTGCTCAAGATCCATTTTCTTCT TTGATGTCAGCACTTTTCTGTCTGCCCGTTCAGTTTCTGTCATCTGCTGAATTCTTCATC CCTTTTGTCCATCTGTTCTATGTTGTTTGTGCCATTCAGGCCCTGGTAACATGCTACGGA GAGGAAACTTTTGATCGATCAAACTTCAATGACTGCCTTCTTAATGATGTTTGCAAGACA ATGTCAGGATATGATATCGCCAGAGACTATTTTGTATCCAAATATATCGATCCCTCTTGT CATCCAAAAGACATGGTCCGCAGATTAACATATCCATATCTTCGGAGATGTGCATTGCTT TGGGAGCTGCTAAGATCTTCTGCCACATCACCCTTGTATGACGGTTCCAATATTTGGGAA GGATCACATCTTTACTTGAGTAATAGCACACAAGACGACAGTTCTTCACTGGCAATGGAA CTGGCCGGGTTACGAGAATTGGAAGACCTGTTTCAGATTCAGTCGCTGGATCTGATTCTC CAAGATGAATCTGTACATATGCTTGCCTTAAAATGGTCTCAACATTTCTGTGAAGAGTAC AATCCCCGTAAATATAGAGGCACTCTCTTTTCTACCCCTGCAGTTCCATTTAGGCTGATG CAACTACCAGATGTGTACCAGGTTCTCCTAGAAAGATATATCAAGATGCAATGCCCTGAT TGTGGCTCAGTGCCTGATGAACCGGCACTATGTTTGCTATGTGGCAAACTATGTTCGCCT AGTTGGAAACCATGCTGCAGGACTGGGAAATGCCAGAATCATGCATTGCAATGTGGTGCT GGTATTGGCATATTTCTTCTAGTGAGGAAAACAACAATCCTGTTGCAGCGATCTGCTCGT CTAACATTTTGGCCGTCTCTATACCTTGATGCTTTTGGAGAGGAGGATAATGAAATGCAC AGAGGAAAACCTTTATATCTAAGTCAAGAAAGATACACATCCCTGACGTATCTGGTGGCA TCTCATAGCCTTGACCGAACTTCTGAAGTTCTTCGGCAAACAACGATTGGCTTTTATGGA TCTGATTGA

Peptide Sequence

PEP ID	Zm00001d039860_P009
PEP Infomation	pep chromosome:B73_RefGen_v4:3:16957547:16974531:-1 gene:Zm00001d039860 transcript:Zm00001d039860_T009 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase PRT6
Sequence	MFKNEPAAMLDDLERSNAGERAVCGSVWGHNDVAYRCRTCESDPTCAICVPCFQNGNHKD HDYSIIYTGGGCCDCGDATAWKREGFCSKHKGAEQIKPLPVELACSVGPVLDVLLQFWKE RICLLEPHHAKGSDGSSCKRIAEELTTSISSMLLEFCTRSENLLSFLSLRIREFPDMLDA LIRSDRLLDKKVARKLHEFLLKLISDPAFKYEFAKVFIHYYPITFGEVIKGCNDSLLEDY PLMTTFSVQIFTVPTLTPRLVREVDLLGVLLGCLTDLFLSCIGEDGRLQTNKWGNLFDAS IRLLDDTRYVLSHEEVSKHVAYGRPDLTRSWIKLLSLVQGMDPQKRVTSIHAEDENEHLS APFVLGHYLGIVQNLLMRGSFSPPDQHESTDVTVCSTAIKGVESAENQRHAKVGRVSQES SVSDLSSRDSSLCCGLPSPAAWLVLQCLKAIESWLWLENDIALRSKLSSLDASSNDSHKL MALLEDPLTSLTGNSSNTNMCVMDVKINEGSQTDCTADYYEASSSPVQGQGQEAMPLVSN STGKGKMHGSSNSTVVQLHPEDAITYTLTDGSILYAHPDSRIEELGILNTRGWPHVVFDV SSQETSFHIPLHRMLSLLLRKAMKKCFGEDGHSDVQSNEFFPQILRGCEPYGFASIVMEH PLRVRVFCAQVRAGMWRKNGDAAILSAEWYRSVQWFEQGLESDLFLLQCCAALSSPELFV RTIQERFGLSSYTDLGLAEQNEFESVLMQEMLIFLIQLVKERRFCGLSTADNLRRELIYK LAIGDATHSQIVKSLPRDLSSSDQLQNVLDSLAAYSNPSGMKQDVASKSSASVTTRNRFG PVDCDGIHISSCGHAVHQECHDRYLFSLKQRYVRRLGFEGGHIVDPDLGELLCPVCRRFA NSILPASPDFSGKTSMMLRPFVQTLTPQVVTTTSDVNRNCLQFARALSLFESAGKIVGET KFLKAISGKLNETTNPALDPCLRRLAMLYYPRSHSSFSPSKRLNPSLFLWDTLRYSLVST EIASRGRMSSHSAESKSCLESLRGELNSSSGFILSLLFHAAHSARNLNRLEVLLRFEGIQ LLAGSICSCISGYKDILNATKRKGSLPSMVDPASEGALFPDVQFWKQCADPVLAQDPFSS LMSALFCLPVQFLSSAEFFIPFVHLFYVVCAIQALVTCYGEETFDRSNFNDCLLNDVCKT MSGYDIARDYFVSKYIDPSCHPKDMVRRLTYPYLRRCALLWELLRSSATSPLYDGSNIWE GSHLYLSNSTQDDSSSLAMELAGLRELEDLFQIQSLDLILQDESVHMLALKWSQHFCEEY NPRKYRGTLFSTPAVPFRLMQLPDVYQVLLERYIKMQCPDCGSVPDEPALCLLCGKLCSP SWKPCCRTGKCQNHALQCGAGIGIFLLVRKTTILLQRSARLTFWPSLYLDAFGEEDNEMH RGKPLYLSQERYTSLTYLVASHSLDRTSEVLRQTTIGFYGSD

Transcript Sequence

Transcript ID	Zm00001d039860_T009
Transcript Infomation	cdna chromosome:B73_RefGen_v4:3:16957547:16974531:-1 gene:Zm00001d039860 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase PRT6
Sequence	AGAGTTTGTCTTGGTTGCAGTGGCTGATGTTCAAAAATGAACCAGCAGCAATGCTTGATG ACCTGGAGCGTTCCAATGCAGGGGAGCGTGCTGTCTGTGGGTCTGTCTGGGGGCACAATG ACGTTGCTTATCGCTGCCGGACTTGCGAGAGTGACCCCACATGTGCAATTTGTGTTCCGT GCTTCCAGAATGGCAATCACAAGGATCATGATTACTCTATCATATATACAGGGGGTGGAT GTTGTGATTGTGGTGATGCGACTGCTTGGAAGCGCGAGGGCTTCTGCTCAAAGCACAAGG GTGCTGAGCAGATCAAGCCTCTTCCAGTGGAGCTTGCGTGTTCTGTAGGACCTGTCCTGG ATGTCCTCTTGCAGTTCTGGAAGGAGCGGATATGCCTGCTGGAACCACACCATGCAAAGG GTAGTGATGGTAGCTCGTGCAAGAGGATTGCCGAAGAGTTGACAACTTCTATCTCTAGCA TGCTGCTTGAGTTCTGCACACGCAGTGAAAACCTTCTTAGTTTTCTGTCCCTAAGAATCC GCGAGTTTCCTGATATGTTAGATGCATTAATAAGGTCAGACAGGTTGCTTGACAAGAAGG TTGCCAGAAAATTGCATGAGTTTTTATTGAAGCTTATCAGTGACCCTGCTTTTAAGTATG AGTTTGCCAAGGTTTTCATACACTACTACCCTATCACATTTGGGGAAGTTATTAAAGGCT GTAATGATTCACTACTGGAAGACTATCCACTGATGACAACTTTTTCTGTGCAAATATTCA CTGTGCCTACATTGACTCCAAGGCTTGTGCGCGAGGTTGATTTGTTGGGTGTCCTCCTTG GATGCTTGACAGATCTGTTTCTCTCTTGCATCGGTGAGGATGGTCGTTTACAGACAAACA AATGGGGGAATTTATTTGATGCTTCTATTCGATTACTGGATGATACACGCTATGTGTTGA GTCATGAAGAGGTGTCTAAGCATGTTGCTTATGGGAGGCCTGATCTAACTAGGTCATGGA TTAAACTCTTATCACTTGTGCAAGGAATGGATCCTCAGAAGAGAGTGACAAGTATTCACG CTGAAGATGAGAACGAGCATCTATCTGCGCCGTTTGTGCTGGGGCACTATCTTGGAATTG TCCAGAATCTTCTGATGAGGGGATCATTTTCTCCTCCTGATCAACATGAATCAACTGATG TGACAGTTTGCTCCACTGCGATAAAAGGTGTGGAAAGTGCTGAAAATCAGCGGCATGCAA AAGTTGGGAGGGTCTCCCAGGAGAGTTCTGTATCCGATCTAAGTAGCAGAGACAGCTCTT TGTGCTGTGGATTGCCATCACCTGCTGCCTGGTTAGTTCTTCAATGCCTGAAAGCCATTG AAAGTTGGCTCTGGCTGGAAAACGATATAGCTCTGAGGAGCAAACTGTCATCCCTTGATG CTAGCAGCAATGATTCTCACAAACTTATGGCTTTGCTTGAAGACCCGTTGACTTCTCTTA CGGGAAACAGTTCAAATACAAATATGTGTGTGATGGACGTCAAGATAAATGAAGGATCAC AAACAGATTGTACTGCAGATTATTATGAGGCATCTAGTTCTCCTGTTCAAGGTCAAGGCC AAGAAGCGATGCCTCTGGTTAGTAACAGTACAGGCAAAGGGAAGATGCATGGCAGCAGCA ACAGTACAGTTGTACAGTTGCACCCTGAGGATGCCATTACTTATACTCTGACTGATGGTA GCATTTTGTATGCTCATCCAGATTCAAGAATCGAGGAACTAGGAATACTCAATACAAGAG GATGGCCTCATGTTGTCTTTGATGTCAGTTCACAAGAAACATCTTTCCATATCCCTTTGC ACCGTATGCTTTCATTACTACTGCGGAAGGCTATGAAGAAATGTTTTGGAGAGGATGGAC ATTCAGATGTGCAATCCAATGAGTTCTTTCCTCAGATACTTAGAGGTTGTGAGCCCTATG GATTTGCTTCAATTGTTATGGAGCATCCACTGAGAGTGAGAGTATTTTGTGCACAAGTGC GTGCTGGAATGTGGCGCAAGAACGGTGATGCAGCTATCCTGAGTGCGGAATGGTACCGCT CTGTGCAATGGTTTGAACAAGGTTTGGAGTCAGATCTGTTTCTGCTTCAATGCTGTGCTG CCCTATCTTCTCCAGAGTTATTTGTGCGGACAATTCAAGAGCGATTTGGTTTGTCCAGTT ATACAGATTTGGGACTTGCAGAGCAAAATGAGTTTGAGTCAGTTTTAATGCAAGAAATGC TGATTTTTCTTATACAACTGGTTAAAGAACGCCGTTTTTGTGGGCTTTCCACAGCAGACA ACTTGAGGAGAGAATTGATTTACAAGTTAGCTATTGGAGACGCCACTCATAGCCAAATTG TTAAGTCTCTTCCTCGCGATCTTTCGTCAAGTGACCAACTTCAAAATGTTCTAGATTCGT TGGCAGCTTATTCTAATCCATCTGGCATGAAGCAGGATGTAGCCTCAAAATCTTCTGCCT CTGTAACTACAAGAAACAGATTTGGTCCCGTCGATTGTGATGGCATCCATATATCTTCTT GCGGACATGCTGTGCATCAGGAATGTCATGACCGATATTTGTTCTCCTTGAAACAAAGAT ATGTCCGGAGACTTGGTTTTGAAGGTGGTCATATAGTTGATCCTGATTTGGGAGAATTGC TTTGTCCAGTATGTCGCAGATTTGCAAATTCCATTCTCCCAGCATCACCTGATTTCTCGG GTAAAACATCAATGATGCTGAGACCATTTGTTCAAACCTTGACACCTCAAGTTGTTACAA CCACATCAGATGTGAATAGAAATTGCTTACAGTTCGCTCGCGCACTATCTCTTTTTGAAA GTGCTGGAAAAATCGTTGGAGAAACCAAGTTTTTAAAAGCTATATCTGGGAAGCTTAATG AAACTACAAATCCAGCCCTCGATCCTTGTCTTCGAAGATTGGCTATGCTTTACTATCCTC GCAGTCACAGCAGTTTTTCACCATCTAAGAGGCTCAACCCATCCTTATTTCTCTGGGATA CACTAAGATACTCTCTGGTATCTACAGAAATTGCTTCTCGTGGTAGGATGTCAAGCCACT CTGCTGAATCGAAGTCCTGCTTGGAGTCTTTGCGTGGCGAACTTAATTCATCAAGTGGGT TCATATTGTCTCTCCTGTTCCATGCTGCCCACTCTGCACGGAATTTGAATCGTCTCGAGG TTCTTCTGAGGTTTGAAGGTATCCAACTATTAGCAGGCTCTATTTGCTCTTGTATTTCGG GTTATAAAGACATTCTGAATGCCACTAAGCGAAAAGGCTCTTTGCCATCGATGGTTGATC CAGCCAGTGAGGGGGCCCTCTTTCCTGATGTACAATTTTGGAAACAATGTGCTGATCCAG TTCTTGCTCAAGATCCATTTTCTTCTTTGATGTCAGCACTTTTCTGTCTGCCCGTTCAGT TTCTGTCATCTGCTGAATTCTTCATCCCTTTTGTCCATCTGTTCTATGTTGTTTGTGCCA TTCAGGCCCTGGTAACATGCTACGGAGAGGAAACTTTTGATCGATCAAACTTCAATGACT GCCTTCTTAATGATGTTTGCAAGACAATGTCAGGATATGATATCGCCAGAGACTATTTTG TATCCAAATATATCGATCCCTCTTGTCATCCAAAAGACATGGTCCGCAGATTAACATATC CATATCTTCGGAGATGTGCATTGCTTTGGGAGCTGCTAAGATCTTCTGCCACATCACCCT TGTATGACGGTTCCAATATTTGGGAAGGATCACATCTTTACTTGAGTAATAGCACACAAG ACGACAGTTCTTCACTGGCAATGGAACTGGCCGGGTTACGAGAATTGGAAGACCTGTTTC AGATTCAGTCGCTGGATCTGATTCTCCAAGATGAATCTGTACATATGCTTGCCTTAAAAT GGTCTCAACATTTCTGTGAAGAGTACAATCCCCGTAAATATAGAGGCACTCTCTTTTCTA CCCCTGCAGTTCCATTTAGGCTGATGCAACTACCAGATGTGTACCAGGTTCTCCTAGAAA GATATATCAAGATGCAATGCCCTGATTGTGGCTCAGTGCCTGATGAACCGGCACTATGTT TGCTATGTGGCAAACTATGTTCGCCTAGTTGGAAACCATGCTGCAGGACTGGGAAATGCC AGAATCATGCATTGCAATGTGGTGCTGGTATTGGCATATTTCTTCTAGTGAGGAAAACAA CAATCCTGTTGCAGCGATCTGCTCGTCTAACATTTTGGCCGTCTCTATACCTTGATGCTT TTGGAGAGGAGGATAATGAAATGCACAGAGGAAAACCTTTATATCTAAGTCAAGAAAGAT ACACATCCCTGACGTATCTGGTGGCATCTCATAGCCTTGACCGAACTTCTGAAGTTCTTC GGCAAACAACGATTGGCTTTTATGGATCTGATTGAGCCCATTTTTCAAGGAACAATGTGT TCAAAGGATCTTGCGGATGTGCATATTTTGGGAACTGTACTGCAACTTGGTGTTTGATCT TCTCCGGTGGTAACGAGAGCGTTACCTCAACCAAGGTGGTGTAGATTCTGCAGGCTCGCC ACCCGTCGTTGCTCTATGGCGCACTGGCCCTCTGCTGCCCTCTTGTGCCTAATGTACAGT CTACATTCTTTTCTTTCTTTATTATGGACGGTGCTCACAAAATGGATGACCTTGGAAGTT GTAACGCTGTACGATCGACTGCATGATCTGTATGCACAGACATAGCGTCGGACTGGTGTA GTTTGTCAGTATGAAATGCAGGCATCAGGTGCCATTTCGTCG