Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d039837_T005
CDS Infomation	cds chromosome:B73_RefGen_v4:3:16287945:16290196:-1 gene:Zm00001d039837 gene_biotype:protein_coding transcript_biotype:protein_coding description:Spermidine hydroxycinnamoyl transferase
Sequence	ATGGATTATTTGAAGGTGCAGGTGGTAGAGTCATCATTTGTAGTGCCGAGCGAGCCGACG CCAACGAAGGCGCTCTGGCTCTCTTGCTTGGACATGGTTCAGTCCAACAAAGCCCACACC CCAACGATCCACTTGTACAGCTCCAACGATGCTGCGGCGGCTGATTTTTTCGACCTGGGC AGACTCAAGAAGGCTACGGCCAAAGCCTTGGTGGCCTTCTACCCCCTCGCCGGCCGCCTC GTCGACAGCGACGATGGTAGGAAGGAGATCAGCTGCAACGGCGAAGGTGCACTCTTTGTT GTCGCTCGCGCGGATGGTGATCTCACTATCGATGAAGTCAAGAAATTCAAGCCATCGCCA GAGTTGAGGAGGCTGTTTATTCCACTCATCGAGCCATCGTCCATCATAATGGCCATACAG GTGACTTTCTTGAAGTGTGGAGGTGTGGTGTTAGGAACAGCTATCCACCACGCCGCCACA GACGTTTCAAGCGCGTTCCACTTTTTTCAGACATGGTCGGCGTTCTGCAAGCATGGTGAC AGTGCTGCCGTGGAGCTCCCGTGCCACGACCGCACCCTACTCCGCGCACGGTCCCCGCCC ACAGTCCACCCCGACGCGCTCTCGACATTGCAGCCTCGGCTCGTCCTCACTGAACCCGAG GGGCCTCTTGCCATCGAAATCTTCACCATTTCCAGGGACCATGTCGCCTCCCTGAAGCAG CTCTGCGGTGGCACGAGCACCTTTTGCGCCGTCAGCGCTCTCATCTGGCAGTGCGCGTGC GTTGCACGACGGATCCCACCGGACTCTCAGGTGCGCGTGATGTTCCCGGCCGACGTCCGC CGCCGGATGAGGCCGCCCCTCCCGACCCACTACTTCGGCAACGCAGTGATCAGGCTATAC GCCGCTGGCCCGGCAGGGGACATTGGCACGGCGGCGTTGGCATCCGTCGCTGCCCGCATC AAGGGCGCCGTCGAGCGGATGGATGACGAGCTGGTGCGGTCCGCGATTGACTACTACGAG ATGGCCGAGACGAACAAGAGACGGACTGGGACAGGCATCTTACCACGGACGGACCTGAAT ATTACCAGCTGGTTGGGTAGGCCACAGCACGACGCAGATTTTGGCTGGGGAAAGCCGCAA TCCATGTCGCGGGCGGAGTCTGTCCGCGGCGGCTCTATGCACTTGATGAACGACGACGGT GGTACCGGCGACGTCCGCGTGCTCGTGTGCTTGGAGGCTGAAAATATAAAGGAGCTAGGA CGGCTGCTTTATGCAAAGCTCTAG

Peptide Sequence

PEP ID	Zm00001d039837_P005
PEP Infomation	pep chromosome:B73_RefGen_v4:3:16287945:16290196:-1 gene:Zm00001d039837 transcript:Zm00001d039837_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:Spermidine hydroxycinnamoyl transferase
Sequence	MDYLKVQVVESSFVVPSEPTPTKALWLSCLDMVQSNKAHTPTIHLYSSNDAAAADFFDLG RLKKATAKALVAFYPLAGRLVDSDDGRKEISCNGEGALFVVARADGDLTIDEVKKFKPSP ELRRLFIPLIEPSSIIMAIQVTFLKCGGVVLGTAIHHAATDVSSAFHFFQTWSAFCKHGD SAAVELPCHDRTLLRARSPPTVHPDALSTLQPRLVLTEPEGPLAIEIFTISRDHVASLKQ LCGGTSTFCAVSALIWQCACVARRIPPDSQVRVMFPADVRRRMRPPLPTHYFGNAVIRLY AAGPAGDIGTAALASVAARIKGAVERMDDELVRSAIDYYEMAETNKRRTGTGILPRTDLN ITSWLGRPQHDADFGWGKPQSMSRAESVRGGSMHLMNDDGGTGDVRVLVCLEAENIKELG RLLYAKL

Transcript Sequence

Transcript ID	Zm00001d039837_T005
Transcript Infomation	cdna chromosome:B73_RefGen_v4:3:16287945:16290196:-1 gene:Zm00001d039837 gene_biotype:protein_coding transcript_biotype:protein_coding description:Spermidine hydroxycinnamoyl transferase
Sequence	CTCCACGCGAATCCGCATCTCCACACTCCAATCAGCGCTCCTCCGTCCCCGTTCTTTCCT CCTCCCTTCAGCCATCGCAGTCGCAGCGCAGGTTCTTGGCTGGTTGCTGGTGTCGACAGC GAAGTCCGCAACTCCAATCCTGCCTGCGCTCCTCCCTTCCTCCGTCCTCACTAAGCACCC GCGCACGCCGCCTGCCTGTCGATTGAGATCTCTTTCACGCCCCTTTCTGCCATCGCACAA CTGAGCCGCAGCTAGTAACATCCATTTTGCTGGTCAATAAGTCGTGGGAGGAAGAAGATG GATTATTTGAAGGTGCAGGTGGTAGAGTCATCATTTGTAGTGCCGAGCGAGCCGACGCCA ACGAAGGCGCTCTGGCTCTCTTGCTTGGACATGGTTCAGTCCAACAAAGCCCACACCCCA ACGATCCACTTGTACAGCTCCAACGATGCTGCGGCGGCTGATTTTTTCGACCTGGGCAGA CTCAAGAAGGCTACGGCCAAAGCCTTGGTGGCCTTCTACCCCCTCGCCGGCCGCCTCGTC GACAGCGACGATGGTAGGAAGGAGATCAGCTGCAACGGCGAAGGTGCACTCTTTGTTGTC GCTCGCGCGGATGGTGATCTCACTATCGATGAAGTCAAGAAATTCAAGCCATCGCCAGAG TTGAGGAGGCTGTTTATTCCACTCATCGAGCCATCGTCCATCATAATGGCCATACAGGTG ACTTTCTTGAAGTGTGGAGGTGTGGTGTTAGGAACAGCTATCCACCACGCCGCCACAGAC GTTTCAAGCGCGTTCCACTTTTTTCAGACATGGTCGGCGTTCTGCAAGCATGGTGACAGT GCTGCCGTGGAGCTCCCGTGCCACGACCGCACCCTACTCCGCGCACGGTCCCCGCCCACA GTCCACCCCGACGCGCTCTCGACATTGCAGCCTCGGCTCGTCCTCACTGAACCCGAGGGG CCTCTTGCCATCGAAATCTTCACCATTTCCAGGGACCATGTCGCCTCCCTGAAGCAGCTC TGCGGTGGCACGAGCACCTTTTGCGCCGTCAGCGCTCTCATCTGGCAGTGCGCGTGCGTT GCACGACGGATCCCACCGGACTCTCAGGTGCGCGTGATGTTCCCGGCCGACGTCCGCCGC CGGATGAGGCCGCCCCTCCCGACCCACTACTTCGGCAACGCAGTGATCAGGCTATACGCC GCTGGCCCGGCAGGGGACATTGGCACGGCGGCGTTGGCATCCGTCGCTGCCCGCATCAAG GGCGCCGTCGAGCGGATGGATGACGAGCTGGTGCGGTCCGCGATTGACTACTACGAGATG GCCGAGACGAACAAGAGACGGACTGGGACAGGCATCTTACCACGGACGGACCTGAATATT ACCAGCTGGTTGGGTAGGCCACAGCACGACGCAGATTTTGGCTGGGGAAAGCCGCAATCC ATGTCGCGGGCGGAGTCTGTCCGCGGCGGCTCTATGCACTTGATGAACGACGACGGTGGT ACCGGCGACGTCCGCGTGCTCGTGTGCTTGGAGGCTGAAAATATAAAGGAGCTAGGACGG CTGCTTTATGCAAAGCTCTAGCAAGCTGCTAGTGCTATGCTCTAAAAATAATAATATTAA TAATAAGGTTTGTTACTATGCTTAAGGGGAACCATACTTTTTCCCTCGCGATTTATTATT ATTATGGCAGTTTCAATAATGAAAACCATTTGTAATTCCTGTGACAATTAATTTATGCGT CCACGCTAGAAATAAAAACTTGTTTG