Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d039833_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:16203110:16205064:-1 gene:Zm00001d039833 gene_biotype:protein_coding transcript_biotype:protein_coding description:Spermidine hydroxycinnamoyl transferase
Sequence

ATGGAATCGATGGATTTGAAGGTGCAGGTGGTAGAGTCATCATTTATAGCGCCGAGCGAG
CCGACGCCAAGGAAGGGCCTCTGGCTCTCTTCCTTGGACATCCTGGTGGCCAACATAGGC
CATACCCCAACCATCTACTTGTACAGCTCCAATGATGCTGCCGCGGCTGATTTTTTCGAC
GTGGGCAGACTCAAAAAGGCTATGGCCAAGGCTTTGGTGCCCTTCTACCCCCTCGCCGGC
CGCCTCGGCAACAACAGCGACGATGGTAGGACGGAGATCAGCTGCAACGGCGAAGGTGCA
CTCTTTGTTGTCGCTCACGCGGATGATGAACTCACTATCGACGACGTCAAGAAATTGAAG
CCATCGCCAGAGTTGAGGAGGCTGTTCGTTCCACGCATCGAGCCATCGTCCATCATGTTG
GCCATACAGGTGACTTTCTTGAAGTCTGGAGGGGTGGTGTTAGGAACAGCTCTCCACCAC
GCCGCCATAGACGCTTCAAGTGCGTTCCACTTTTTCCAGACATGGTCGGCATTCTGCAAG
CATGGTGACCGTGCTGCCGTGGAGCTCCCGTGCCACGACCGCACCCTACTCCGCGCACGG
TCGCCGCCCACAGTCCACCCCGGCACACTCTTGACATTGCAGCCTCGGCTAACCCTCTCT
GACCTCGAGGGACCTCTTGCCATCGAAGTCTTCACCATTTCCAAGGATCAGGTCGCCTCC
CTGAAGCACCTCTGCGGTGGCACGAGCACCTTTTGCGCCGTCAGCGCTCTCATCTGGCAG
TGTACGTGCGTTGCGCGCCGCCTTCCACCGGATTCTCAAGTGCGCATGGTATTTCCCGCC
GAGCTCCGCCGCCGGATGAGGCCGCCCCTCCCGAACCACTACTTCGGCAACGCAGTGTTC
AGGCTATACGTCACTGGCGCGGCTGGGGATATTGGCACGGCGGCGTTGGGATCCGTCGCT
ACCCGCATCAAGGGCGCCATCAAGCGGTTGGATGACGAGCTGGTGCGGTCCGCCATTGAC
TACTTCGAGAACGAGAAGGCCGCCGAGATGAACAAGAGACGGGCTCTGAGAGGCACCCTG
CCAAAGACGTTCCTGAATATTACAAGCTGGTTGGGTAGGCCACAGTACGACGCAGATTTT
GGGTGGGGAAAGCCGCAATTCATGTCGCTGGCGGAGTCCTTCTGCGGCGGCTTTGTGCAC
TTGATGAACGATGAGAGGACAACGTACTACGGTGGTGCCACCGGCGACGTCCGCATGATC
GTGTGCATGGAGGCTGTAGATATGAAGGAGCTAGGGCGGTTGCTTTATGTGAAGCTCAAG
CAAGCTGCTTGTGCTATGCACTAA

Peptide Sequence

PEP ID

Zm00001d039833_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:16203110:16205064:-1 gene:Zm00001d039833 transcript:Zm00001d039833_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Spermidine hydroxycinnamoyl transferase
Sequence

MESMDLKVQVVESSFIAPSEPTPRKGLWLSSLDILVANIGHTPTIYLYSSNDAAAADFFD
VGRLKKAMAKALVPFYPLAGRLGNNSDDGRTEISCNGEGALFVVAHADDELTIDDVKKLK
PSPELRRLFVPRIEPSSIMLAIQVTFLKSGGVVLGTALHHAAIDASSAFHFFQTWSAFCK
HGDRAAVELPCHDRTLLRARSPPTVHPGTLLTLQPRLTLSDLEGPLAIEVFTISKDQVAS
LKHLCGGTSTFCAVSALIWQCTCVARRLPPDSQVRMVFPAELRRRMRPPLPNHYFGNAVF
RLYVTGAAGDIGTAALGSVATRIKGAIKRLDDELVRSAIDYFENEKAAEMNKRRALRGTL
PKTFLNITSWLGRPQYDADFGWGKPQFMSLAESFCGGFVHLMNDERTTYYGGATGDVRMI
VCMEAVDMKELGRLLYVKLKQAACAMH

Transcript Sequence

Transcript ID

Zm00001d039833_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:16203110:16205064:-1 gene:Zm00001d039833 gene_biotype:protein_coding transcript_biotype:protein_coding description:Spermidine hydroxycinnamoyl transferase
Sequence

AAACAGCATTAGAGTGCATTTACAGTACGTTCACCCCCGCGGCCCGCCCCTTCAGCCATC
GCAAAACTGAGGTATTCTTCTTGGCTGAATGCTGGCGTCGACAGCAAAGTCCACAACTCC
ATCCTGCATGCGCTCCTCCCTGTTCTCCGTTCTCACTCAGCACCCCCCCCCCCCCCTTTT
GGCTTATTGCATAGTATATGCATGCCCACAGTAAGTCGCATTGCATTCTGTATGAGGTAG
GGTATTTTTGCAGTTCTTGAATCGTGGGAAGAAGAAGATATGGAATCGATGGATTTGAAG
GTGCAGGTGGTAGAGTCATCATTTATAGCGCCGAGCGAGCCGACGCCAAGGAAGGGCCTC
TGGCTCTCTTCCTTGGACATCCTGGTGGCCAACATAGGCCATACCCCAACCATCTACTTG
TACAGCTCCAATGATGCTGCCGCGGCTGATTTTTTCGACGTGGGCAGACTCAAAAAGGCT
ATGGCCAAGGCTTTGGTGCCCTTCTACCCCCTCGCCGGCCGCCTCGGCAACAACAGCGAC
GATGGTAGGACGGAGATCAGCTGCAACGGCGAAGGTGCACTCTTTGTTGTCGCTCACGCG
GATGATGAACTCACTATCGACGACGTCAAGAAATTGAAGCCATCGCCAGAGTTGAGGAGG
CTGTTCGTTCCACGCATCGAGCCATCGTCCATCATGTTGGCCATACAGGTGACTTTCTTG
AAGTCTGGAGGGGTGGTGTTAGGAACAGCTCTCCACCACGCCGCCATAGACGCTTCAAGT
GCGTTCCACTTTTTCCAGACATGGTCGGCATTCTGCAAGCATGGTGACCGTGCTGCCGTG
GAGCTCCCGTGCCACGACCGCACCCTACTCCGCGCACGGTCGCCGCCCACAGTCCACCCC
GGCACACTCTTGACATTGCAGCCTCGGCTAACCCTCTCTGACCTCGAGGGACCTCTTGCC
ATCGAAGTCTTCACCATTTCCAAGGATCAGGTCGCCTCCCTGAAGCACCTCTGCGGTGGC
ACGAGCACCTTTTGCGCCGTCAGCGCTCTCATCTGGCAGTGTACGTGCGTTGCGCGCCGC
CTTCCACCGGATTCTCAAGTGCGCATGGTATTTCCCGCCGAGCTCCGCCGCCGGATGAGG
CCGCCCCTCCCGAACCACTACTTCGGCAACGCAGTGTTCAGGCTATACGTCACTGGCGCG
GCTGGGGATATTGGCACGGCGGCGTTGGGATCCGTCGCTACCCGCATCAAGGGCGCCATC
AAGCGGTTGGATGACGAGCTGGTGCGGTCCGCCATTGACTACTTCGAGAACGAGAAGGCC
GCCGAGATGAACAAGAGACGGGCTCTGAGAGGCACCCTGCCAAAGACGTTCCTGAATATT
ACAAGCTGGTTGGGTAGGCCACAGTACGACGCAGATTTTGGGTGGGGAAAGCCGCAATTC
ATGTCGCTGGCGGAGTCCTTCTGCGGCGGCTTTGTGCACTTGATGAACGATGAGAGGACA
ACGTACTACGGTGGTGCCACCGGCGACGTCCGCATGATCGTGTGCATGGAGGCTGTAGAT
ATGAAGGAGCTAGGGCGGTTGCTTTATGTGAAGCTCAAGCAAGCTGCTTGTGCTATGCAC
TAAAAATAAGGGCCGTAAAAATAAAGCTCTAGCAAGCTGCTCGTGCTATGCATTAAGAAT
AAGGGCAGTAAAAATAAAGCTATAGCAAGCTGCTAATGCTATGCACTAAAAATAAAGCTC
TTCCAAACTGCTAGTGTTATGCACTAAAAATAATAATATGGTTTGTTACTATATATGCTA
AAAATAATAATAAATGAGCTAAGGCAGCTGTATTA