Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d039686_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:11849125:11853329:1 gene:Zm00001d039686 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGAACGCGTCGCAGTTCATGGACAAGCAGATCCTCGGCCTCGCCGCCTCCGCCTCCCCG
TCCGGCGGCGGCGCGGGGGGCGGTGGGGGTGTGGATCTCAGCGATCTGATGATCCCGATC
CCCCAGGAGGACGGCGAGGACCGTCTCCGTCGCCGGCGTAGCAGTAGCAGCGTCAACGGC
ACATCAGACGACATGCTACCCAGCTACGATTTCCAGCCGATCCGCACCGGCGGCGCCACC
GCCGCCGCCCCCGTGTCTCAGGCCTCGTGGGGATCGCTCGACTCCAAGGCACCCTCCGCC
TCTGCCTCTGCCTCCGCCGCCGCCTCATACAACCTCAAGAGTGCTGGTATATTGGAGCCA
CATGTGCTGAAGAAAGTTAGTCATGAGGAAGACAGGAGTAACTTCCCTACAGTTACTATC
GCAGATATTGATCGAACCATGAAGAAGTACTCTGATAACCTTTTGCATGCACTGGAAGGT
GTAAGCTCAAGGCTTTCACAGATGGAGGGCAGAACACACCAACTAGAAAACTCTGTTGAT
GAGTTGAAGTTAACAATTGGTAACTATAATGGTAGCACTGATGGAAAACTCAGGCACCTT
GAGAACATGCTCAGAGAGGTCCAAGCAGGTGTGCAGATTTTACGAGACAAGCAGGAAATT
GTCGAGGCGCAACTCCACCTTGCAAAGCTCCAGACAACCAAAACTGATGCCCACTCATCA
GAAAATAGTGGGTCTGGACATGCTGGCTCTCAGCCGGTGCCTCCTCCACAAGCAGCCATT
CAGCCACAGCAAGTCTTAACCCCTTTGCAACCACCTGCACTTCCTGCCCTTCCTGCTCCA
AATGCACCACTTCCAACGCTTCAAAGCCAACCACCATCACAGTTTCCAAGTCATTTACAA
CATTCACAGGTACCATCTGTGCCTTCTGTTGCACCGGTTCCCTCAGTTCCGGCTTTACCA
AGGGATGCTTACTATGCTCCATCTTCTCAGCCGACCGAAACCATGCACCAGCAGTATCAA
GCTCCGCCAGTTCCACAGCCTCAGGCCCCTCCTGCACCTCAGCAATACCAATCCCCATCC
CAGTTCCCTCAATATTCACAGCCATCTCAGCCTTCAAACGTTAACCCTCCAACTCCACAT
GTGCCTCCTGCACCCCAGCAACCAGAGGAAACTATGCCTTACCCACCGCCTCAGAGCTAT
GCACCTAATGCACGTCCTCCTTCACCTTATATGCAACCGCCTAGTGGACCTGCTCCTCCT
TACTATGGACAACAAAACCCTACCATGTATGAACCTCCCGCAGGCCGGGCTAACCCTGGG
CCGCCATCATCATACGGTTCTGGTGGCTATGGACCACAGGGTGGGAGTGGTTTCTCTGAC
TCATATGGTTACGCTGGATCTCCTTCCCACCGCGGCAATGCTGGAATGAAGCCGTCTACA
CCTTTTGCTCAATCCTCTGGGGGAAGTGGCGGCTATGGCAGTGGCAGGCTCCCCACGGCT
CAGATACTACCACAAGCAGTGCCGGTAAGCTCCTCCAGCACCAGCGGTGCTTCAGGCAAT
AGAGTGCCACTTGACGATGTAGTTGAGAAGGTTGCCACGATGGGATTCTCGAGAGAGCAG
GTGAGAGCAACCGTGCGGAGGCTGACGGAAAATGGGCAGAATGTGGACCTGAACGTGGTT
CTCGACAAGCTGATGAACGGCAGATAA

Peptide Sequence

PEP ID

Zm00001d039686_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:11849125:11853329:1 gene:Zm00001d039686 transcript:Zm00001d039686_T001 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MNASQFMDKQILGLAASASPSGGGAGGGGGVDLSDLMIPIPQEDGEDRLRRRRSSSSVNG
TSDDMLPSYDFQPIRTGGATAAAPVSQASWGSLDSKAPSASASASAAASYNLKSAGILEP
HVLKKVSHEEDRSNFPTVTIADIDRTMKKYSDNLLHALEGVSSRLSQMEGRTHQLENSVD
ELKLTIGNYNGSTDGKLRHLENMLREVQAGVQILRDKQEIVEAQLHLAKLQTTKTDAHSS
ENSGSGHAGSQPVPPPQAAIQPQQVLTPLQPPALPALPAPNAPLPTLQSQPPSQFPSHLQ
HSQVPSVPSVAPVPSVPALPRDAYYAPSSQPTETMHQQYQAPPVPQPQAPPAPQQYQSPS
QFPQYSQPSQPSNVNPPTPHVPPAPQQPEETMPYPPPQSYAPNARPPSPYMQPPSGPAPP
YYGQQNPTMYEPPAGRANPGPPSSYGSGGYGPQGGSGFSDSYGYAGSPSHRGNAGMKPST
PFAQSSGGSGGYGSGRLPTAQILPQAVPVSSSSTSGASGNRVPLDDVVEKVATMGFSREQ
VRATVRRLTENGQNVDLNVVLDKLMNGR

Transcript Sequence

Transcript ID

Zm00001d039686_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:11849125:11853329:1 gene:Zm00001d039686 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

GCGAATTGCAGAGCTGGAGGCCCGGAGCAACGCGAACCGACTCGCCGTCCCGTCCCGTCT
CGCCTCGCTTGCTTGTCCCCATCCGGATTACTCTTCCGCTCCCTTCCCCTCCTCACCTCA
CCACCATCTCCAGCTCCATCCGCACCAACATCTCCACCAACCGACACGGCGAGGAGATGA
ACGCGTCGCAGTTCATGGACAAGCAGATCCTCGGCCTCGCCGCCTCCGCCTCCCCGTCCG
GCGGCGGCGCGGGGGGCGGTGGGGGTGTGGATCTCAGCGATCTGATGATCCCGATCCCCC
AGGAGGACGGCGAGGACCGTCTCCGTCGCCGGCGTAGCAGTAGCAGCGTCAACGGCACAT
CAGACGACATGCTACCCAGCTACGATTTCCAGCCGATCCGCACCGGCGGCGCCACCGCCG
CCGCCCCCGTGTCTCAGGCCTCGTGGGGATCGCTCGACTCCAAGGCACCCTCCGCCTCTG
CCTCTGCCTCCGCCGCCGCCTCATACAACCTCAAGAGTGCTGGTATATTGGAGCCACATG
TGCTGAAGAAAGTTAGTCATGAGGAAGACAGGAGTAACTTCCCTACAGTTACTATCGCAG
ATATTGATCGAACCATGAAGAAGTACTCTGATAACCTTTTGCATGCACTGGAAGGTGTAA
GCTCAAGGCTTTCACAGATGGAGGGCAGAACACACCAACTAGAAAACTCTGTTGATGAGT
TGAAGTTAACAATTGGTAACTATAATGGTAGCACTGATGGAAAACTCAGGCACCTTGAGA
ACATGCTCAGAGAGGTCCAAGCAGGTGTGCAGATTTTACGAGACAAGCAGGAAATTGTCG
AGGCGCAACTCCACCTTGCAAAGCTCCAGACAACCAAAACTGATGCCCACTCATCAGAAA
ATAGTGGGTCTGGACATGCTGGCTCTCAGCCGGTGCCTCCTCCACAAGCAGCCATTCAGC
CACAGCAAGTCTTAACCCCTTTGCAACCACCTGCACTTCCTGCCCTTCCTGCTCCAAATG
CACCACTTCCAACGCTTCAAAGCCAACCACCATCACAGTTTCCAAGTCATTTACAACATT
CACAGGTACCATCTGTGCCTTCTGTTGCACCGGTTCCCTCAGTTCCGGCTTTACCAAGGG
ATGCTTACTATGCTCCATCTTCTCAGCCGACCGAAACCATGCACCAGCAGTATCAAGCTC
CGCCAGTTCCACAGCCTCAGGCCCCTCCTGCACCTCAGCAATACCAATCCCCATCCCAGT
TCCCTCAATATTCACAGCCATCTCAGCCTTCAAACGTTAACCCTCCAACTCCACATGTGC
CTCCTGCACCCCAGCAACCAGAGGAAACTATGCCTTACCCACCGCCTCAGAGCTATGCAC
CTAATGCACGTCCTCCTTCACCTTATATGCAACCGCCTAGTGGACCTGCTCCTCCTTACT
ATGGACAACAAAACCCTACCATGTATGAACCTCCCGCAGGCCGGGCTAACCCTGGGCCGC
CATCATCATACGGTTCTGGTGGCTATGGACCACAGGGTGGGAGTGGTTTCTCTGACTCAT
ATGGTTACGCTGGATCTCCTTCCCACCGCGGCAATGCTGGAATGAAGCCGTCTACACCTT
TTGCTCAATCCTCTGGGGGAAGTGGCGGCTATGGCAGTGGCAGGCTCCCCACGGCTCAGA
TACTACCACAAGCAGTGCCGGTAAGCTCCTCCAGCACCAGCGGTGCTTCAGGCAATAGAG
TGCCACTTGACGATGTAGTTGAGAAGGTTGCCACGATGGGATTCTCGAGAGAGCAGGTGA
GAGCAACCGTGCGGAGGCTGACGGAAAATGGGCAGAATGTGGACCTGAACGTGGTTCTCG
ACAAGCTGATGAACGGCAGATAAGTTGAGCAGTAGTGCCATTTCAACAGTATGTGTATAG
TATGGAGACTTGGGAAGTGTCAGCTGAACCGATTTTCTGTCTGCAACTTTGTAAACCTGG
AGAACTCTGATGACCGAACAGCCGCTCATCCTGATTGCCGGTCATGGTTGCTCCACCTGA
AATGGAAACAGCCCAGTGTGCCTGTCAGTGAACTATAGTATTATTGCAATCTGAATACGT
TATTCATTTGATGTATATGTGGTGCTGATGATATTTTAAAACATATACCGTGGTTTCTTG
TGATATGTTAATAAGAAGCCTTTACTGTGTTTTTT