Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d039533_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:7446385:7450083:-1 gene:Zm00001d039533 gene_biotype:protein_coding transcript_biotype:protein_coding description:Plant cysteine oxidase 2
Sequence

ATGCGGGTGGAGTCCAGCGGCGGCCTCCCACTCCCAGAGCTGGAAAGACAGCAGGCGGGC
GCCAAGAGACGCCGCCGGCGGGCACGGGCGGCGGCGGCGGCGGCGGCACCCCGAACGATG
GCCGCGCCCGCCACCGCCGTGCAGCGGCTCTTCGAGGCGTGCCGCGAGGTCTTCACCGGA
GCTGGTCCAGGCGCGGTTCCACCGCCGGCCGGCGTCGAGAGGATCAAGTCCGTTCTAGAT
AGTATCACAGCAGCAGATGTTCGTCTAACATCCAGCATGCCATATTTCCGACGTGTTGAC
CCCTACGGCACTCCAAAAATCACTTACTTGCACCTATACAAGTGCGAGGCTTTCTCGATC
GGCATCTTTTGTTTGCCATCGAGGGGTGTCATTCCTCTCCACAATCACCCTGGCATGACT
GTGTTCAGCAAGCTTTTGTTTGGTGCCATGCATATAAAATCTTATGACTGGGCTGCTTCT
CAACAAGACACACCTGATGTTCAGTTGCAAGCAGGACCACGTTTGGCAAAGGTGAAGGTT
GATGGCATCTTGACTGCACCTCATGAAACGGCGGTACTATATCCAGAAGATGGTGGTAAT
ATGCATTGCTTTACCGCACAGAATGCTTGTGCAGTGCTTGATGTCCTTGGCCCTCCATAT
GATGATGGCAGCGGAAGGCACTGCCAGTACTACAATGTCCGTTCCTCTGCAATTTCTGTT
GCAGGCTCAACTATATTGCCTGGAGGTGACAGATATGAATGGCTGGAGGAGAGCGAGCCA
TCTCGAGATTTTTATCTTGTTGGATCAACATATATGGGCCCGAAAATTTTGGACCACTGA

Peptide Sequence

PEP ID

Zm00001d039533_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:7446385:7450083:-1 gene:Zm00001d039533 transcript:Zm00001d039533_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Plant cysteine oxidase 2
Sequence

MRVESSGGLPLPELERQQAGAKRRRRRARAAAAAAAPRTMAAPATAVQRLFEACREVFTG
AGPGAVPPPAGVERIKSVLDSITAADVRLTSSMPYFRRVDPYGTPKITYLHLYKCEAFSI
GIFCLPSRGVIPLHNHPGMTVFSKLLFGAMHIKSYDWAASQQDTPDVQLQAGPRLAKVKV
DGILTAPHETAVLYPEDGGNMHCFTAQNACAVLDVLGPPYDDGSGRHCQYYNVRSSAISV
AGSTILPGGDRYEWLEESEPSRDFYLVGSTYMGPKILDH

Transcript Sequence

Transcript ID

Zm00001d039533_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:7446385:7450083:-1 gene:Zm00001d039533 gene_biotype:protein_coding transcript_biotype:protein_coding description:Plant cysteine oxidase 2
Sequence

CAGCTCAATCAACGCAAGAGCGCCACGCCAGTACTTTTCGCAGCCGTCGTGCAAAGCTCT
CTCCAAGCCCTCGCCCTTTCACGCTCCCTTGAGGGCTTTGATGCGGGTGGAGTCCAGCGG
CGGCCTCCCACTCCCAGAGCTGGAAAGACAGCAGGCGGGCGCCAAGAGACGCCGCCGGCG
GGCACGGGCGGCGGCGGCGGCGGCGGCACCCCGAACGATGGCCGCGCCCGCCACCGCCGT
GCAGCGGCTCTTCGAGGCGTGCCGCGAGGTCTTCACCGGAGCTGGTCCAGGCGCGGTTCC
ACCGCCGGCCGGCGTCGAGAGGATCAAGTCCGTTCTAGATAGTATCACAGCAGCAGATGT
TCGTCTAACATCCAGCATGCCATATTTCCGACGTGTTGACCCCTACGGCACTCCAAAAAT
CACTTACTTGCACCTATACAAGTGCGAGGCTTTCTCGATCGGCATCTTTTGTTTGCCATC
GAGGGGTGTCATTCCTCTCCACAATCACCCTGGCATGACTGTGTTCAGCAAGCTTTTGTT
TGGTGCCATGCATATAAAATCTTATGACTGGGCTGCTTCTCAACAAGACACACCTGATGT
TCAGTTGCAAGCAGGACCACGTTTGGCAAAGGTGAAGGTTGATGGCATCTTGACTGCACC
TCATGAAACGGCGGTACTATATCCAGAAGATGGTGGTAATATGCATTGCTTTACCGCACA
GAATGCTTGTGCAGTGCTTGATGTCCTTGGCCCTCCATATGATGATGGCAGCGGAAGGCA
CTGCCAGTACTACAATGTCCGTTCCTCTGCAATTTCTGTTGCAGGCTCAACTATATTGCC
TGGAGGTGACAGATATGAATGGCTGGAGGAGAGCGAGCCATCTCGAGATTTTTATCTTGT
TGGATCAACATATATGGGCCCGAAAATTTTGGACCACTGAACTTCTATGCTTGTGAGATA
GGATGTGCCTATAGCTGTTCGGCTGCTAGAAAAGTTGCTGCACCCACAGCGTTTCCTGAG
AGGAAAAAAAAGCCTACTGCTCACTTCAACAGTTCAACAGCATCGTTACCTGCCTCTTCA
GCAGTTCAACAGCTTTTAACAGATCAGTATATGTTGGTTTTGGAGGAAGTGATTAGGAAG
AAGAAACGATGGACCACAATGGTAAGTGCTCACCGTTCGTAAATATATGACACCGTTGAT
TTTTTTAAAAAAAATTTAATCACTCGTTTTATTAAAAAAATAATGAGTTATCATTTATTT
TTATATGATTTAGTTTGTGCTTGACTTAAAATTTTACATTTTAGAATAAATATTTTGAAT
AAAACGAGTGGTCAAAGTTTTCAAAAAAAATCAATAGTGTTATATATTTATGAACGGAGG
TAGTACTCACTTCGGACTGAATTATTGTGGAAAGACCATGAGGATGTCCCGAAAGTCACA
GTCATGCTTCAGTATGAATACGACCTGGATCCTCGGACGATTATCAAGTGTATTGTATCC
TGTAATAGTGTCAATTGTCAAACACGCATTGCCACCGGAGATAAAAAAAAGTCTCCTGAT
AACTTGCCGTATAATACTGTCACAGCCCAAGCAGCTGCCTATGCAAGTGTTCACACAT