Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d039524_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:3:7085192:7086610:-1 gene:Zm00001d039524 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transposon protein CACTA%2C En/Spm sub-class
Sequence	ATGAGCACCTCGTACACCGAGGCGCAGTTCGGCTCCTTGTTAGACCTGCCCGCCGGAGAC GACCTCACGTCCTGGTTCACACACCTGTGCGGCGAGGAGCAGGCGGCGGCGCTGCCGGCG TTCCAGGCGCCGGTGGCGATGGCGGACCCCAGGAAGAGGAGCGCCGAGTACCAGCTCCTG GAAGGGGAGGCGTCCGGGGTCAAGAGGCAGCGCTCCCCGACCAGCAGCTCCCGGGAGAAC AGCGCCGGCAGCAATGACGGCGACTACGAGCACACGTCCGCAGCCGCAGCCGCAGCCGCA GCCGGCGGCGGTGGCGGAGGCAGGGGCGGCGGCCGCCGCCTCTGGGTCAAGGAGCGCGAC CACGAGTGGTGGGACCGGATGAGCAGCCCCGCGTGCCCCGACGACGAGTTCCGCCGCGCC TTCCGCATGTCCCGGGCCACCTTCGAGGCCGTGTGCGAGGAGCTGGGCGCCGCCGTCGCC AAGGAGGACACCATGCTGCGCGCCGCCATCCCCGTCCGCCAGCGCGTGGCCGTCTGCATC TGGCGCCTCGCCACCGGGGAGCCGCTCCGCCTCGTGTCCAAGCGCTTCGGCCTCGGCATC TCCACCTGCCACAAGCTCGTCCTCGAGGTCTGCGCCGCCATCAAGGCCGTGCTCATGCCC AAGGCCGTGCAGTGGCCCGAGGCGCCCGACGCCGCCGCGGCCGAGTCCGCCAGGTTCGAG GCCGCGTCGGGGATCCCGGGCGTCGTGGGCGCCATGTACACCACGCACATCCCCATCATC GCGCCCAAGGCCAACGTCGCCGCCTACTACAACCGCCGCCACACGGAGCGCAACCAGAAG ACGTCCTACTCCATCACGGTGCAGGGCGTCGTGGACGCGGGCGGTGCCTTCACGGACGTC TGCATCGGCTGGCCGGGCTCCATGTCCGACGCCGACGTGCTCGACCGCTCCGCGCTCTAC CTGCAGCGAGGCGCCGCGGGCCTGCTGCAGGGGCAGCGCCTGGTGGGCGGCGCCGGGTAC CCGCTCATGGACTGGCTGCTGGTGCCCTACACGCACCACAACATGACGTGGGCGCAGCAC GTGTTCAACGAGCGGGTGGACGGCGTGCGCGCCGTGGCCAGGGACGCCTTCCAGCGCCTC AAGTCCCGCTGGGGCTGCCTCCAGAAGCGCACCGAGGTGAAGCTGCAGGACCTCCCCGTC GTGCTCGGCGCCTGCTGCGTCCTCCACAACATCTGCGAGCGCGCCGGAGACGCCGTCGAC CCCGACATCGCGTTCCAGCTCTTCGACGACGACATGGTGGCCGAGAACCCCGTGCGCTCC ACGGCGGCCGTCGCCGCGCGCGACAACATCGCCCACAACCTCCTCCACCGCAGCAGCAGT AGCAGCGCCGCCGCCGGCCCCAGGTTCGCCTTCAATTGA

Peptide Sequence

PEP ID	Zm00001d039524_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:3:7085192:7086610:-1 gene:Zm00001d039524 transcript:Zm00001d039524_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transposon protein CACTA%2C En/Spm sub-class
Sequence	MSTSYTEAQFGSLLDLPAGDDLTSWFTHLCGEEQAAALPAFQAPVAMADPRKRSAEYQLL EGEASGVKRQRSPTSSSRENSAGSNDGDYEHTSAAAAAAAAGGGGGGRGGGRRLWVKERD HEWWDRMSSPACPDDEFRRAFRMSRATFEAVCEELGAAVAKEDTMLRAAIPVRQRVAVCI WRLATGEPLRLVSKRFGLGISTCHKLVLEVCAAIKAVLMPKAVQWPEAPDAAAAESARFE AASGIPGVVGAMYTTHIPIIAPKANVAAYYNRRHTERNQKTSYSITVQGVVDAGGAFTDV CIGWPGSMSDADVLDRSALYLQRGAAGLLQGQRLVGGAGYPLMDWLLVPYTHHNMTWAQH VFNERVDGVRAVARDAFQRLKSRWGCLQKRTEVKLQDLPVVLGACCVLHNICERAGDAVD PDIAFQLFDDDMVAENPVRSTAAVAARDNIAHNLLHRSSSSSAAAGPRFAFN

Transcript Sequence

Transcript ID	Zm00001d039524_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:3:7085192:7086610:-1 gene:Zm00001d039524 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transposon protein CACTA%2C En/Spm sub-class
Sequence	ATGAGCACCTCGTACACCGAGGCGCAGTTCGGCTCCTTGTTAGACCTGCCCGCCGGAGAC GACCTCACGTCCTGGTTCACACACCTGTGCGGCGAGGAGCAGGCGGCGGCGCTGCCGGCG TTCCAGGCGCCGGTGGCGATGGCGGACCCCAGGAAGAGGAGCGCCGAGTACCAGCTCCTG GAAGGGGAGGCGTCCGGGGTCAAGAGGCAGCGCTCCCCGACCAGCAGCTCCCGGGAGAAC AGCGCCGGCAGCAATGACGGCGACTACGAGCACACGTCCGCAGCCGCAGCCGCAGCCGCA GCCGGCGGCGGTGGCGGAGGCAGGGGCGGCGGCCGCCGCCTCTGGGTCAAGGAGCGCGAC CACGAGTGGTGGGACCGGATGAGCAGCCCCGCGTGCCCCGACGACGAGTTCCGCCGCGCC TTCCGCATGTCCCGGGCCACCTTCGAGGCCGTGTGCGAGGAGCTGGGCGCCGCCGTCGCC AAGGAGGACACCATGCTGCGCGCCGCCATCCCCGTCCGCCAGCGCGTGGCCGTCTGCATC TGGCGCCTCGCCACCGGGGAGCCGCTCCGCCTCGTGTCCAAGCGCTTCGGCCTCGGCATC TCCACCTGCCACAAGCTCGTCCTCGAGGTCTGCGCCGCCATCAAGGCCGTGCTCATGCCC AAGGCCGTGCAGTGGCCCGAGGCGCCCGACGCCGCCGCGGCCGAGTCCGCCAGGTTCGAG GCCGCGTCGGGGATCCCGGGCGTCGTGGGCGCCATGTACACCACGCACATCCCCATCATC GCGCCCAAGGCCAACGTCGCCGCCTACTACAACCGCCGCCACACGGAGCGCAACCAGAAG ACGTCCTACTCCATCACGGTGCAGGGCGTCGTGGACGCGGGCGGTGCCTTCACGGACGTC TGCATCGGCTGGCCGGGCTCCATGTCCGACGCCGACGTGCTCGACCGCTCCGCGCTCTAC CTGCAGCGAGGCGCCGCGGGCCTGCTGCAGGGGCAGCGCCTGGTGGGCGGCGCCGGGTAC CCGCTCATGGACTGGCTGCTGGTGCCCTACACGCACCACAACATGACGTGGGCGCAGCAC GTGTTCAACGAGCGGGTGGACGGCGTGCGCGCCGTGGCCAGGGACGCCTTCCAGCGCCTC AAGTCCCGCTGGGGCTGCCTCCAGAAGCGCACCGAGGTGAAGCTGCAGGACCTCCCCGTC GTGCTCGGCGCCTGCTGCGTCCTCCACAACATCTGCGAGCGCGCCGGAGACGCCGTCGAC CCCGACATCGCGTTCCAGCTCTTCGACGACGACATGGTGGCCGAGAACCCCGTGCGCTCC ACGGCGGCCGTCGCCGCGCGCGACAACATCGCCCACAACCTCCTCCACCGCAGCAGCAGT AGCAGCGCCGCCGCCGGCCCCAGGTTCGCCTTCAATTGA