Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d039514_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:3:6305716:6307327:-1 gene:Zm00001d039514 gene_biotype:protein_coding transcript_biotype:protein_coding description:Clavaminate synthase-like protein

Sequence

ATGGCGAGCTTCTTCCGGGACGCGCGCCTCCCGCAGCAGCGCGTCGTGGAGGGCGTCCCG
TTCCCGGCGGTGCTGGTCCCGAGCGCCCCCGCGGGCGGCGGCCTCGACGAGTTCCTGGCG
GCCGTGCGCTCCGAGAGGGCGTCCCGGCTGGAGCCGCTGGTGCGGCACGCGGGGGCCCTG
CTGCTGCGCGGGTTCCCCGCGACGACGGCCGCGGACTTCGACCGCGCCGTCGACGCCTTC
GGGTACGAGGAGCTGCCGTACGTCGGCGGCGCCGCGCCGCGGACCAACGTCGTGGGCCGG
GTGTTCACCGCCAACGAGTCGCCGCCCGATCAGAAGATCCCCTTCCACCACGAGATGGCC
CAGGTTCCAACGTTTCCGTCCAAACTGTTCTTCTTCTGTGAAGTGGAGCCAAAGAGTGGC
GGGGAGACACCGATCGTACTGAGCCATTACGTCTACAAGAGGATGCAGGAAGAATTCCCC
GAATTCGTGGAGAAACTGGAGAAGGAGGGGCTGGTATATACAAGGGTTCTGGGGGAGGGC
GATGACCCGTCTTCGCCAATCGGCCGTGGATGGCAGTCGACATTTCTCACTAAAGATAAA
GCCGTTGCTGAGGAAAGGGCCGCCAAGCTCGGGATGAAGCTGGAATGGACCGGCGACGGC
GTGAGGACGGTCATGGGGCCCATCCCGGCGGTGAAGTGGGACGAGAGCCGGGGGCGGAAG
GTCTGGTTCAACAGCATGGTGGCCGCCTACACGGGGTGGAAGGACGCCCGGAACGACCCG
GTGAAGGCGGTGACCTTCGGCGACGGCTCGCCCCTGCCCGCCGACGTCGTCGCCGCGTGC
GGCCGGGTCCTGGAGGAGGAGTGCGTGGCCGTGCCGTGGCGGCGCGGCGACATCCTCCTC
CTCGACAACTGGGCCGTCCTGCACTCCCGGCGCTCCTTCGAGCCACCGCGCCGCATCCTT
GCCTCGCTCTGTAAATGA

Peptide Sequence

PEP ID

Zm00001d039514_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:3:6305716:6307327:-1 gene:Zm00001d039514 transcript:Zm00001d039514_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Clavaminate synthase-like protein

Sequence

MASFFRDARLPQQRVVEGVPFPAVLVPSAPAGGGLDEFLAAVRSERASRLEPLVRHAGAL
LLRGFPATTAADFDRAVDAFGYEELPYVGGAAPRTNVVGRVFTANESPPDQKIPFHHEMA
QVPTFPSKLFFFCEVEPKSGGETPIVLSHYVYKRMQEEFPEFVEKLEKEGLVYTRVLGEG
DDPSSPIGRGWQSTFLTKDKAVAEERAAKLGMKLEWTGDGVRTVMGPIPAVKWDESRGRK
VWFNSMVAAYTGWKDARNDPVKAVTFGDGSPLPADVVAACGRVLEEECVAVPWRRGDILL
LDNWAVLHSRRSFEPPRRILASLCK

Transcript Sequence

Transcript ID

Zm00001d039514_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:6305716:6307327:-1 gene:Zm00001d039514 gene_biotype:protein_coding transcript_biotype:protein_coding description:Clavaminate synthase-like protein

Sequence

GTTCACGGTTCATCCCTCTGTCCAGAGCATCATTCCGAATTCCCAACGAATCCGGACACG
CCTCTCGCATCCACCGCTCCACCGTCTCCATCCACGCGCCCGCGCGCGGCCCGGCAACGG
GAGCCAAGGAAACCGAAGCCCCGATGGCGAGCTTCTTCCGGGACGCGCGCCTCCCGCAGC
AGCGCGTCGTGGAGGGCGTCCCGTTCCCGGCGGTGCTGGTCCCGAGCGCCCCCGCGGGCG
GCGGCCTCGACGAGTTCCTGGCGGCCGTGCGCTCCGAGAGGGCGTCCCGGCTGGAGCCGC
TGGTGCGGCACGCGGGGGCCCTGCTGCTGCGCGGGTTCCCCGCGACGACGGCCGCGGACT
TCGACCGCGCCGTCGACGCCTTCGGGTACGAGGAGCTGCCGTACGTCGGCGGCGCCGCGC
CGCGGACCAACGTCGTGGGCCGGGTGTTCACCGCCAACGAGTCGCCGCCCGATCAGAAGA
TCCCCTTCCACCACGAGATGGCCCAGGTTCCAACGTTTCCGTCCAAACTGTTCTTCTTCT
GTGAAGTGGAGCCAAAGAGTGGCGGGGAGACACCGATCGTACTGAGCCATTACGTCTACA
AGAGGATGCAGGAAGAATTCCCCGAATTCGTGGAGAAACTGGAGAAGGAGGGGCTGGTAT
ATACAAGGGTTCTGGGGGAGGGCGATGACCCGTCTTCGCCAATCGGCCGTGGATGGCAGT
CGACATTTCTCACTAAAGATAAAGCCGTTGCTGAGGAAAGGGCCGCCAAGCTCGGGATGA
AGCTGGAATGGACCGGCGACGGCGTGAGGACGGTCATGGGGCCCATCCCGGCGGTGAAGT
GGGACGAGAGCCGGGGGCGGAAGGTCTGGTTCAACAGCATGGTGGCCGCCTACACGGGGT
GGAAGGACGCCCGGAACGACCCGGTGAAGGCGGTGACCTTCGGCGACGGCTCGCCCCTGC
CCGCCGACGTCGTCGCCGCGTGCGGCCGGGTCCTGGAGGAGGAGTGCGTGGCCGTGCCGT
GGCGGCGCGGCGACATCCTCCTCCTCGACAACTGGGCCGTCCTGCACTCCCGGCGCTCCT
TCGAGCCACCGCGCCGCATCCTTGCCTCGCTCTGTAAATGATGTATGTATATGGGCGCGG
ATTTGCTGCTCCGACGAGCGATGAACGCCTGAAACTGAGAATAATTTCACACGCTGGAGA
GAGCGGTGTTTAGAAATT