Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d039499_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:3:6010215:6014021:-1 gene:Zm00001d039499 gene_biotype:protein_coding transcript_biotype:protein_coding description:ATP-dependent 6-phosphofructokinase 4 chloroplastic
Sequence

ATGGAATCCTTCGGTGTCCCTCCTGCGCCCGTGGCGGCGCCGGAGAAGAGGAAGAAGCCG
CTCGACCTCAAGGACCCCGTCCCCGCCGCCGCCGCCGCCGCCGCCAACGGCGGCGGCGCC
ACCAAGGCGTCCCCAGCGGCGAAGTGGGCGGAGAAGAAGAAGCTGGTGGGCGGCGACGCC
GGCTACGTGCTCGAGGACGTGCCGCACCTCACGGATTACCTGCCCCAGCTCCCGACATAC
CCGAACCCCCTCCAAGACAACCCGGCGTATTCAGTCGTCAAGCAGTACTTCGTCAACCCA
GACGACACCGTCACGCAGAAGATCGTTGTTCACAAGACCAGCGCCAGGGGCACCCACTTC
CGGCGCGCCGGGCCACGGCAGCGGGTGTACTTCCAGCCCGACGAGGTGAACGCCGCCATC
GTCACCTGCGGCGGGCTCTGCCCCGGCTTGAACACCGTCATCCGTGAGCTTGTCTGCGGC
CTGTATGACATGTACGGCGTCACCAGTGTCGTTGGCATAGAGGGTGGATACAAGGGTTTC
TATTCCAAAAACACGGTCGCGTTGACACCGAGATCAGTGAACGGCATCCACAAGAGAGGC
GGGACGGTCCTGGGAACGTCGAGAGGAGGGCATGACACTGCCAAGATTGTTGACTGTCTT
CAGGACCGTGGTATTAACCAGGTCTATATTATCGGCGGCGACGGTACTCAGAAAGGCGCC
TCTGTGATTTACGAGGAAGTCCGTAGACGGGGCCTCAAATGCGCTGTGGTCGGCGTCCCA
AAGACCATCGATAATGACATCGCGGTGATCGACAAGTCGTTCGGATTTGACACTGCCGTG
GAGGAGGCCCAGAGGGCCATCAACGCTGCTCATGTCGAGGCTGAGAGTGCAGAGAACGGC
ATCGGTGTCGTGAAGCTGATGGGTCGCAACAGCGGTTTCATTGCCATGTACGCTACTCTA
GCTAGCCGCGACGTGGACTGTTGCTTAATCCCGGAGTCGCCCTTCTACCTTGAAGGGAAG
GGAGGGCTCCTTGAGTTTGTCGAGAGACGGCTCAAGGACAACGGACACATGGTCATCGTG
GTGGCCGAGGGTGCTGGACAGGATCTCATCGCGAAAAGCATGAATTCCGTGGACACCCAG
GATGCTTCGGGAAATAAGCTGCTTCTGGATGTTGGCCTCTGGCTATCCCAGAAGATAAAG
GATCATTTCAAGAAGAAGCCCCGTTTCCCGATAACTCTCAAGTACATCGACCCGACTTAC
ATGATCCGCGCCGTCAGTTCAAACGCTTCCGACAACGTCTACTGCACTCTGCTAGCCCAC
AGCGCGCTCCATGGCGCCATGGCGGGGTACACCGGCTTCATCGTCGCTCCGGTCAATGGC
AGACACGCCTACATCCCGTTCTATAGGATCACCGAGAAGCAGAACAAGGTGGTGATCACG
GACCGGATGTGGGCGAGGGTGCTGTGCTCGACGAACCAGCCCTGCTTCCTGAGCCACGAG
GACGTGGAGAACATGAAGCACGACGACGACGAGCACCACCTGCACAACACGCTGCTCCTG
GACTCGCCGGAAAACTCGTCCAAATGA

Peptide Sequence

PEP ID

Zm00001d039499_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:3:6010215:6014021:-1 gene:Zm00001d039499 transcript:Zm00001d039499_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:ATP-dependent 6-phosphofructokinase 4 chloroplastic
Sequence

MESFGVPPAPVAAPEKRKKPLDLKDPVPAAAAAAANGGGATKASPAAKWAEKKKLVGGDA
GYVLEDVPHLTDYLPQLPTYPNPLQDNPAYSVVKQYFVNPDDTVTQKIVVHKTSARGTHF
RRAGPRQRVYFQPDEVNAAIVTCGGLCPGLNTVIRELVCGLYDMYGVTSVVGIEGGYKGF
YSKNTVALTPRSVNGIHKRGGTVLGTSRGGHDTAKIVDCLQDRGINQVYIIGGDGTQKGA
SVIYEEVRRRGLKCAVVGVPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEAESAENG
IGVVKLMGRNSGFIAMYATLASRDVDCCLIPESPFYLEGKGGLLEFVERRLKDNGHMVIV
VAEGAGQDLIAKSMNSVDTQDASGNKLLLDVGLWLSQKIKDHFKKKPRFPITLKYIDPTY
MIRAVSSNASDNVYCTLLAHSALHGAMAGYTGFIVAPVNGRHAYIPFYRITEKQNKVVIT
DRMWARVLCSTNQPCFLSHEDVENMKHDDDEHHLHNTLLLDSPENSSK

Transcript Sequence

Transcript ID

Zm00001d039499_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:6010215:6014021:-1 gene:Zm00001d039499 gene_biotype:protein_coding transcript_biotype:protein_coding description:ATP-dependent 6-phosphofructokinase 4 chloroplastic
Sequence

GGGTTCGGTCCTCCTCCGTCCGTCGCCGTCGTCAAACCTCAAGCGCGACGTGTGTAAACG
GCCCGCGCCTTCGGCAGACGCCAACAACAGACTCAGACTATACTCGCAGCAGAAAGGTTA
GTTAGCTGAGCTCCGCGGGGGGTCGAACCGAGACTCTTCGTCGCGCGCGCCGCAGGGCCA
GCCCAGCAGGCGGCGGACGCGAAAGCTTGCTCAGCTCTGTGTTCACCGGCGGCACGGGCC
GTCCCGGCGATGGAATCCTTCGGTGTCCCTCCTGCGCCCGTGGCGGCGCCGGAGAAGAGG
AAGAAGCCGCTCGACCTCAAGGACCCCGTCCCCGCCGCCGCCGCCGCCGCCGCCAACGGC
GGCGGCGCCACCAAGGCGTCCCCAGCGGCGAAGTGGGCGGAGAAGAAGAAGCTGGTGGGC
GGCGACGCCGGCTACGTGCTCGAGGACGTGCCGCACCTCACGGATTACCTGCCCCAGCTC
CCGACATACCCGAACCCCCTCCAAGACAACCCGGCGTATTCAGTCGTCAAGCAGTACTTC
GTCAACCCAGACGACACCGTCACGCAGAAGATCGTTGTTCACAAGACCAGCGCCAGGGGC
ACCCACTTCCGGCGCGCCGGGCCACGGCAGCGGGTGTACTTCCAGCCCGACGAGGTGAAC
GCCGCCATCGTCACCTGCGGCGGGCTCTGCCCCGGCTTGAACACCGTCATCCGTGAGCTT
GTCTGCGGCCTGTATGACATGTACGGCGTCACCAGTGTCGTTGGCATAGAGGGTGGATAC
AAGGGTTTCTATTCCAAAAACACGGTCGCGTTGACACCGAGATCAGTGAACGGCATCCAC
AAGAGAGGCGGGACGGTCCTGGGAACGTCGAGAGGAGGGCATGACACTGCCAAGATTGTT
GACTGTCTTCAGGACCGTGGTATTAACCAGGTCTATATTATCGGCGGCGACGGTACTCAG
AAAGGCGCCTCTGTGATTTACGAGGAAGTCCGTAGACGGGGCCTCAAATGCGCTGTGGTC
GGCGTCCCAAAGACCATCGATAATGACATCGCGGTGATCGACAAGTCGTTCGGATTTGAC
ACTGCCGTGGAGGAGGCCCAGAGGGCCATCAACGCTGCTCATGTCGAGGCTGAGAGTGCA
GAGAACGGCATCGGTGTCGTGAAGCTGATGGGTCGCAACAGCGGTTTCATTGCCATGTAC
GCTACTCTAGCTAGCCGCGACGTGGACTGTTGCTTAATCCCGGAGTCGCCCTTCTACCTT
GAAGGGAAGGGAGGGCTCCTTGAGTTTGTCGAGAGACGGCTCAAGGACAACGGACACATG
GTCATCGTGGTGGCCGAGGGTGCTGGACAGGATCTCATCGCGAAAAGCATGAATTCCGTG
GACACCCAGGATGCTTCGGGAAATAAGCTGCTTCTGGATGTTGGCCTCTGGCTATCCCAG
AAGATAAAGGATCATTTCAAGAAGAAGCCCCGTTTCCCGATAACTCTCAAGTACATCGAC
CCGACTTACATGATCCGCGCCGTCAGTTCAAACGCTTCCGACAACGTCTACTGCACTCTG
CTAGCCCACAGCGCGCTCCATGGCGCCATGGCGGGGTACACCGGCTTCATCGTCGCTCCG
GTCAATGGCAGACACGCCTACATCCCGTTCTATAGGATCACCGAGAAGCAGAACAAGGTG
GTGATCACGGACCGGATGTGGGCGAGGGTGCTGTGCTCGACGAACCAGCCCTGCTTCCTG
AGCCACGAGGACGTGGAGAACATGAAGCACGACGACGACGAGCACCACCTGCACAACACG
CTGCTCCTGGACTCGCCGGAAAACTCGTCCAAATGAAATGGGGCACAAGACTTGTTTTGC
TTTTTTGGGTGCTGGCGTTGTAGAGATTAGCGACCGCTATATGATAGGGTTGGATAATGT
GAGCATTTTGTAATAATATAAGCTTCCTGAAGTAAGCTCGTTTTGGCTGTTCGTGT