Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d039425_T013
CDS Infomation

cds chromosome:B73_RefGen_v4:3:3945495:3949776:1 gene:Zm00001d039425 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGGCAAGGGAAATCCTCATTTTGCGCCGACTTGATCATCCAAATGTTATCAAACTAGAG
GGTCTAGTAACATCAAGAATGTCCTGCAGCTTATATCTTGTTTTTGAGTACATGGAGCAT
GATCTAGCCGGACTAGCTTCTTTCCCTGGAGTAAAATTTACTGAGTCTCAGGTAAAGTGT
TACATGCAACAGCTCCTCCGTGGTCTTGAGCATTGCCACAGCCGTCACATTCTGCACCGT
GACATTAAGGGTTCAAATCTCTTGATTGATAACCGAGGCATATTGAAGATAGCAGATTTT
GGATTAGCAAGTTTCTTTGATCCTGAACAACGACACCCTTTGACTAGTCGTGTTGTCACG
CTATGGTATAGGCCACCAGAGCTCTTGCTTGGTGCCACCAATTATGGTGTTGCTGTAGAC
CTCTGGAGTGCTGGCTGCATTCTTGCCGAGCTATATGCTGGCAAGCCTATCATGCCTGGT
AGAACAGAGGTTGAGCAGTTGCATAAAATATTTAAACTCTGTGGTTCACCGTCAGAGGAT
TATTGGAGGAAATCTAAGCTTCCCCATGCCACCATTTTCAAACCGCAACACCCGTATGCA
AGGCGTGTACCAGAAACATTTAAAGAGTTCCCTGTTCCTGCTCTGGCATTAGTAGATGTT
CTTCTTTCAGTAGACCCAGCTGATCGTGGAACTGCGTCTTCTGCATTGCAAAGTGAGTTT
TTTACAACAAAACCATATGCCTGCAATCCTTCAAGCTTGCCTAGGTACCCCCCAAGCAAA
GAGTTTGATGCAAAACGTCGGGAGGAGGAAGCTCGAAGGCAAGGTGTTACTGGAGGAAAG
CAACATAAACATGACCCTGAAAGAAGAACCAGAGAATCAAGAGCAGTCCCTGCCCCTGAG
GCAAATGCAGAATTAGTATCATCATTGCAGAAAAGGCAAGCCCAAGCTAATACCAGGAGC
AGGAGCGAAATGTTCAATCCCTGCAAAGAAGACTCCGCGTCCGGATTCCGAATCGAACCA
CCCCGGCCAACTCCTGTTACCGAGTCTTCTGAAGACCCACAACGTGCCTACCCAACCAGG
ATCTTCCATTCTGGGCCTCTAGTTAACCAGAGCCAGCCATCAAAGGCTGGAGGCGGCAAA
AATGGTGAACCTCAGGTCCCTGGTGTTGCGAATCACCCTGTGGTTTTGTCGACAAGATCA
GGTCCCCGGGCAGACGATAGCGGCCGGACAATGGTCGCTCAAGCTGAAGCATTTGCTCAT
GGGCGGAGGCTGTCGGAGTCCATCAATGAGCATTTCAGTAACAGTGGGAAGTACGATCAA
GTGTTCCCGAAGAAGGATGACAGGAACATTAGGGCTGATGGAGCTATTGGCTACGGATCC
AAAGGCAGCAAGATCCACCACTCTGGGCCCCTGACCTGTCCTTCAGGCAGCAACGTCGAC
GAGATGCTGAAGGAGAACGACCGGCAAATCCAAGAAGTGTTCCGGCGAACCCGGGTGGAG
AAGTCGCGAGCGAGGAGGGACCATGGACATCACCAGGGCGGTATAAGACCTGGCGATTTC
GGCGCCATCCCAGTCTTCCCTTCCAGCCGCTCCAGCTATCAGGCTGTGCAGCAGTAA

Peptide Sequence

PEP ID

Zm00001d039425_P013
PEP Infomation

pep chromosome:B73_RefGen_v4:3:3945495:3949776:1 gene:Zm00001d039425 transcript:Zm00001d039425_T013 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MAREILILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASFPGVKFTESQVKC
YMQQLLRGLEHCHSRHILHRDIKGSNLLIDNRGILKIADFGLASFFDPEQRHPLTSRVVT
LWYRPPELLLGATNYGVAVDLWSAGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSED
YWRKSKLPHATIFKPQHPYARRVPETFKEFPVPALALVDVLLSVDPADRGTASSALQSEF
FTTKPYACNPSSLPRYPPSKEFDAKRREEEARRQGVTGGKQHKHDPERRTRESRAVPAPE
ANAELVSSLQKRQAQANTRSRSEMFNPCKEDSASGFRIEPPRPTPVTESSEDPQRAYPTR
IFHSGPLVNQSQPSKAGGGKNGEPQVPGVANHPVVLSTRSGPRADDSGRTMVAQAEAFAH
GRRLSESINEHFSNSGKYDQVFPKKDDRNIRADGAIGYGSKGSKIHHSGPLTCPSGSNVD
EMLKENDRQIQEVFRRTRVEKSRARRDHGHHQGGIRPGDFGAIPVFPSSRSSYQAVQQ

Transcript Sequence

Transcript ID

Zm00001d039425_T013
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:3945495:3949776:1 gene:Zm00001d039425 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

AGATTGGTCAGGGTACATACAGTAATGTTTACAGAGCTCGTGACCTCGAAAAGGAGAAGA
TTGTTGCTTTGAAGAAAGTGCGGTTTGATAATTTGGAACCTGAGAGCGTGAAATTTATGG
CAAGGGAAATCCTCATTTTGCGCCGACTTGATCATCCAAATGTTATCAAACTAGAGGGTC
TAGTAACATCAAGAATGTCCTGCAGCTTATATCTTGTTTTTGAGTACATGGAGCATGATC
TAGCCGGACTAGCTTCTTTCCCTGGAGTAAAATTTACTGAGTCTCAGGTAAAGTGTTACA
TGCAACAGCTCCTCCGTGGTCTTGAGCATTGCCACAGCCGTCACATTCTGCACCGTGACA
TTAAGGGTTCAAATCTCTTGATTGATAACCGAGGCATATTGAAGATAGCAGATTTTGGAT
TAGCAAGTTTCTTTGATCCTGAACAACGACACCCTTTGACTAGTCGTGTTGTCACGCTAT
GGTATAGGCCACCAGAGCTCTTGCTTGGTGCCACCAATTATGGTGTTGCTGTAGACCTCT
GGAGTGCTGGCTGCATTCTTGCCGAGCTATATGCTGGCAAGCCTATCATGCCTGGTAGAA
CAGAGGTTGAGCAGTTGCATAAAATATTTAAACTCTGTGGTTCACCGTCAGAGGATTATT
GGAGGAAATCTAAGCTTCCCCATGCCACCATTTTCAAACCGCAACACCCGTATGCAAGGC
GTGTACCAGAAACATTTAAAGAGTTCCCTGTTCCTGCTCTGGCATTAGTAGATGTTCTTC
TTTCAGTAGACCCAGCTGATCGTGGAACTGCGTCTTCTGCATTGCAAAGTGAGTTTTTTA
CAACAAAACCATATGCCTGCAATCCTTCAAGCTTGCCTAGGTACCCCCCAAGCAAAGAGT
TTGATGCAAAACGTCGGGAGGAGGAAGCTCGAAGGCAAGGTGTTACTGGAGGAAAGCAAC
ATAAACATGACCCTGAAAGAAGAACCAGAGAATCAAGAGCAGTCCCTGCCCCTGAGGCAA
ATGCAGAATTAGTATCATCATTGCAGAAAAGGCAAGCCCAAGCTAATACCAGGAGCAGGA
GCGAAATGTTCAATCCCTGCAAAGAAGACTCCGCGTCCGGATTCCGAATCGAACCACCCC
GGCCAACTCCTGTTACCGAGTCTTCTGAAGACCCACAACGTGCCTACCCAACCAGGATCT
TCCATTCTGGGCCTCTAGTTAACCAGAGCCAGCCATCAAAGGCTGGAGGCGGCAAAAATG
GTGAACCTCAGGTCCCTGGTGTTGCGAATCACCCTGTGGTTTTGTCGACAAGATCAGGTC
CCCGGGCAGACGATAGCGGCCGGACAATGGTCGCTCAAGCTGAAGCATTTGCTCATGGGC
GGAGGCTGTCGGAGTCCATCAATGAGCATTTCAGTAACAGTGGGAAGTACGATCAAGTGT
TCCCGAAGAAGGATGACAGGAACATTAGGGCTGATGGAGCTATTGGCTACGGATCCAAAG
GCAGCAAGATCCACCACTCTGGGCCCCTGACCTGTCCTTCAGGCAGCAACGTCGACGAGA
TGCTGAAGGAGAACGACCGGCAAATCCAAGAAGTGTTCCGGCGAACCCGGGTGGAGAAGT
CGCGAGCGAGGAGGGACCATGGACATCACCAGGGCGGTATAAGACCTGGCGATTTCGGCG
CCATCCCAGTCTTCCCTTCCAGCCGCTCCAGCTATCAGGCTGTGCAGCAGTAAGGCCGGC
GCTCGAACAAGATCGGTTGGCGTTGGAACCTCCGATGTGTTTCGGTCCCACGCTTTTTCC
GGGAGGGGATGTGTAGCATACGCTATGCTATGCTATGTACAGGGACAGAGACTCTGAAGG
TGAGGAGAGGGGGAGGTGATTTGTTTATTGGCGGCGATTCGAGTGTCTCGGTGACCAAAC
TCGTGTATCGTCAGGTAGTTTTGAGATGTTCGCTGCAACTGCAATGCAATATGCATTTTC
ACTGTGATGGCATCAAATCTTTCAAACC