Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d039404_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:3475442:3479629:1 gene:Zm00001d039404 gene_biotype:protein_coding transcript_biotype:protein_coding description:Syntaxin-41
Sequence

ATGGCGACGCGCAACCGGACGCCGCTCTACCGCAAGTACCGCGACGCGCTGCGGCACGTC
CGCGCGCCGCCCGGGGCGCCGTCGTCGTCCGGCGGCGGCGGCGGCGGGGGAGGGCCGGTA
ATCGAGATGGCCTCACTCCTGCGCTCCGACCGCCCCTACGCGCCCCTCAGCACCGACGAC
CCCTCCGCCTCCAGTAGAGGCGCTGCGACGGTCGGGCTACCCCCAGCCTGGGTGGATGTC
TCTGAAGAGATATCCGCAAACATGCAGCGGGCAAGGACGAAAATGGCGGAGCTGGCTAAG
GCGCATGCCAAAGCCTTGATGCCGTCCTTTGGTGATGGCAGAGACGACCAACGAGCCATT
GAGGTTCTCACGCACGAGGTAACGGACTTGCTAAAGAGGTCGGAGAAGAGGCTGCAGAAG
CTGTCCATGAAAGATTCGTCAGAGGACTCAAATGTCCGGAAGAATGTCCAGCGTTCTCTT
GCTACAGACCTGCAAAACCTGTCAATGGAGTTCCGGAAAAAGCAGTCGTCGTATCTAAAG
CAGCTTCGTCAACAAAAAGAGGGTCAGGACGGTGTTGATTTGGAAATGAATATAAACGGA
GCAAAGTCTACATTTGAAGATGATGAGTTTGACGATGTGGGTTTCACTGAGGTTCAGATG
TCAAAACTTAAGAAAAGCGAAGCCTTCACTAGAGAAAGGGAGAGAGAAATTGAGCAGGTT
GTTGAATCAGTCAACGAACTTGCACAGATCATGAAGGATCTTTCAGTTCTCGTGATTGAT
CAGGGAACCATCATCGATCGGATAGACTACAACATACAGAATGTTGCAGCTTCAGTTGAG
GAGGGTTACAAACAATTGCAAAAGGCTGAGAGGACCCAGAAGAAAGGGGGCATGGTGATG
TGTGCCACTGTCCTTGTCATTCTAATCTTCATCATGATAGTCCTTCTGATTTTGAAGGAG
ATCATTTTCTGA

Peptide Sequence

PEP ID

Zm00001d039404_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:3475442:3479629:1 gene:Zm00001d039404 transcript:Zm00001d039404_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Syntaxin-41
Sequence

MATRNRTPLYRKYRDALRHVRAPPGAPSSSGGGGGGGGPVIEMASLLRSDRPYAPLSTDD
PSASSRGAATVGLPPAWVDVSEEISANMQRARTKMAELAKAHAKALMPSFGDGRDDQRAI
EVLTHEVTDLLKRSEKRLQKLSMKDSSEDSNVRKNVQRSLATDLQNLSMEFRKKQSSYLK
QLRQQKEGQDGVDLEMNINGAKSTFEDDEFDDVGFTEVQMSKLKKSEAFTREREREIEQV
VESVNELAQIMKDLSVLVIDQGTIIDRIDYNIQNVAASVEEGYKQLQKAERTQKKGGMVM
CATVLVILIFIMIVLLILKEIIF

Transcript Sequence

Transcript ID

Zm00001d039404_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:3475442:3479629:1 gene:Zm00001d039404 gene_biotype:protein_coding transcript_biotype:protein_coding description:Syntaxin-41
Sequence

CTTTGGGGTGAAGGGAGCGGAAGTCGCCCCCTCCCTCGACTCCCCCAGGCCCCAACGCCA
CCGTGTCCTCCCCCGCCCACAGCCGCGTCGCGCACCAACTCCAATTCCTCCTCTCCGAGC
GCCCCCACCCACCTCGACGCCTCGCCTCGGCCGTTGAGATCTCGCGCGCCCGCGGCGGCA
TGGCGACGCGCAACCGGACGCCGCTCTACCGCAAGTACCGCGACGCGCTGCGGCACGTCC
GCGCGCCGCCCGGGGCGCCGTCGTCGTCCGGCGGCGGCGGCGGCGGGGGAGGGCCGGTAA
TCGAGATGGCCTCACTCCTGCGCTCCGACCGCCCCTACGCGCCCCTCAGCACCGACGACC
CCTCCGCCTCCAGTAGAGGCGCTGCGACGGTCGGGCTACCCCCAGCCTGGGTGGATGTCT
CTGAAGAGATATCCGCAAACATGCAGCGGGCAAGGACGAAAATGGCGGAGCTGGCTAAGG
CGCATGCCAAAGCCTTGATGCCGTCCTTTGGTGATGGCAGAGACGACCAACGAGCCATTG
AGGTTCTCACGCACGAGGTAACGGACTTGCTAAAGAGGTCGGAGAAGAGGCTGCAGAAGC
TGTCCATGAAAGATTCGTCAGAGGACTCAAATGTCCGGAAGAATGTCCAGCGTTCTCTTG
CTACAGACCTGCAAAACCTGTCAATGGAGTTCCGGAAAAAGCAGTCGTCGTATCTAAAGC
AGCTTCGTCAACAAAAAGAGGGTCAGGACGGTGTTGATTTGGAAATGAATATAAACGGAG
CAAAGTCTACATTTGAAGATGATGAGTTTGACGATGTGGGTTTCACTGAGGTTCAGATGT
CAAAACTTAAGAAAAGCGAAGCCTTCACTAGAGAAAGGGAGAGAGAAATTGAGCAGGTTG
TTGAATCAGTCAACGAACTTGCACAGATCATGAAGGATCTTTCAGTTCTCGTGATTGATC
AGGGAACCATCATCGATCGGATAGACTACAACATACAGAATGTTGCAGCTTCAGTTGAGG
AGGGTTACAAACAATTGCAAAAGGCTGAGAGGACCCAGAAGAAAGGGGGCATGGTGATGT
GTGCCACTGTCCTTGTCATTCTAATCTTCATCATGATAGTCCTTCTGATTTTGAAGGAGA
TCATTTTCTGACATACATACCTATCTCATTCTACCGGGAACGCCGCAGTTCGTTTGAATA
GCGCGATACGGTTCGCTGATCTGAAGATAGTTCTCCTGCCCATTTTCATAATGGCTGGGC
CAGCAACTGTCTTCCGTGTTGGCCACAATTTTTTTGCATCGTTGCAGATGTAGAGATGCT
CTATTCATACATGCCTCATATTTATAGGGAAAAGAGGATTGTTTTACACGTTTCACCTTC
CAGTTTGCCTTGCGGCGACGAGGCTTGGCTGGTTGTTTATGCCTCTGTATAGGGTGAGTT
GTATCATACATCAGGTTATCGGAAATCAGAAAGTAGATTCAGTTCCTTTCTGCTTTATGT
TGTCTGCCCTTCTATTTTGAGCTAGTTTTGAAGTGGCATTTCATTGTACCAGACATTCCT
AACAATTGTTTCTACAACTTTTCGCTCATGTGTAGCTGATT