Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d039328_T007
CDS Infomation

cds chromosome:B73_RefGen_v4:3:1958667:1965685:1 gene:Zm00001d039328 gene_biotype:protein_coding transcript_biotype:protein_coding description:hAT transposon superfamily
Sequence

ATGCGTGAGAGAGACGCCTGCTGGGAGTACTGCGACAAGCTGGATGGGAACAAGGTCCGG
TGCAGGTTCTGCCACAAGGTCCTCAACGGCGGCATCAGCAGGCTCAAGTTCCACCTGTCC
CAGATCCCCAGCAAAGGGGTGAACCCCTGCACCAAGGTGAAGGAAGACGTCGTCGACAGG
GTGAAGGCCGTCATCTCGGCCAAGGAAGAGTACAAGGAGTTCCAGCTCCTCAAGAGGCAG
CGCGTCGCCGACCTGTCGTCGGCTGCTGCCCCGGCGAAGTGGGCGCCGGAGGCTCCTCCG
TCCCTGTCTACCTCTCCGGGGCGAGTGGCCTCTCCTGCTGCTGTTATTACTCGTGCCGCT
GAACAGAGTCGGCTTCTCGCCCCGGAAGCGTCCGCTCCGGTGCCCAGACCATCTGCTGCT
GCGGCAAACAACAAGCCACGCGCCGCCGCCGCTTCGGAATGGGAGACAGAACGATGTATA
GCTGAGTTCTTTTTCGAGAACAAGTTGGACTACAGCATAGCCGACTCGGTCTCATACCAG
CAGATGCTCGAGGCGCTCGGCGGTCCGGGATTCCGAGGGCCGCCAGCAGATGTTCTGCGG
GACAAGTGGCTGCAGAGGCTCAAGTCCGAGATCCTGCAGAAGACGAAGGAGATCGAGAAG
GACTGGGCGACGACCGGCTGCACGATACTGGCCGATTCGTGGACCGACAACAAGCTGAAA
GCCCTGATCAACTTCTCCGTGGCGTCTCCCATGGGCACGTTCTTCCTCAAGACGGTGGAC
GCCTCCTCGCACTTCAAGACGCACAGGGGCCTGTACGACCTCTTCGACGAGGTGATCCAG
GAGGTGGGCCCGGAGAACGTGGTCCAGATCATCGCCGACAGGAACATCAACTACGGCAGC
ACGGACAAGCTGGTCGCGCAGAACTACGGCGGCGCCATCTTCTGGTCCCCCTGCGCGTCG
TTCTGCGTCAACGCCATGCTGGACGACTTCTCCAAGATCGACTGGGTGAACCAGTGCATC
TGCCAGGCGCAGACCGTGACGCGGTTCATCTACAACAGCAGGTGGGTCCTCGATCTCGCG
AGGAAGTGCGTGGCGGGGCAGGAGCTCGTCTGCTCGGGGATCACCAAGTCCGTGTCGGAC
TTCCTCACGCTGAAGTCCCTGCTGAGGCACAGGCCGAAGCTGAAGCAGATGTTCCACAGC
GCCGAGTTTTCGTCCTCGTCGTACGCGAGCAGGTCGATACCGTGCGTCGAGATCCTGGAC
GACGACGAGCTCTGGAGGGCGGTCGAAGAGATAGCCGCCGTCTCCGAACCTCTGCTCAGG
GTCATGAGGGACGTCTCAGGAGGCAGGCAGGCCATCGGCTACATATACGAGTCGATGACG
AAGGTCACGGACTCTATCAGAACGTACTACATAATGGACGAAGGGAAGTGCAAGTCGTTT
CTGGACATAGTGGAGCAGAGATGGCAGACGGAGCTGCACTCGCCTCTTCACTCGGCTGCC
GCCTTTCTGAGCCCGGGCATCCAGTACAACCCGGAAGTTAAGTTCTTCCGCACTATCAAG
GAGGAGTTCTACCAGGTCCTGGATAAGGTTCTTACGACCCCTGACCAGAGGCATGATATC
ACCGCACAGTTGCACGCTTTCCGCAAGGCACAAGGGCTGTTTGGTTCGAACATTGCTAAA
GAGGCCCGCAACAATACCCCTCCAGGCATGTGGTGGGAGCAGTACGGCGACTCAGCACCG
TCGCTGCAACGCGCCGCCGTCAGAATAACCAGCCAGGTGTGCAGCACGCTGACGTTCCAG
AGGGACTGGGGCGTGATCCTGCAGAACCACTACGAGAAGCGCAACAAGCTGGACAAGGAG
GCCCTGGCCGACCAGGCCTACGTGCACTACAACCTCACGCTGCACTCCGAGCCGAAGGCG
AGGAGGAGGCCGGACGCGGACCCGATCGCGCTGGACGCGGTCGACATGACGTCGGCGTGG
GTGGAGGACTCCGACGGCCCCATCCTCACCCAGTGGCTCGACAGGTTCCCGTCGGCGCTG
GATGGCGGGGACCTGAACACGAGACAGTTCGGTGGATCCATCTTCGGCACCAACGACAAC
CTGTTCGGCCTCTGA

Peptide Sequence

PEP ID

Zm00001d039328_P007
PEP Infomation

pep chromosome:B73_RefGen_v4:3:1958667:1965685:1 gene:Zm00001d039328 transcript:Zm00001d039328_T007 gene_biotype:protein_coding transcript_biotype:protein_coding description:hAT transposon superfamily
Sequence

MRERDACWEYCDKLDGNKVRCRFCHKVLNGGISRLKFHLSQIPSKGVNPCTKVKEDVVDR
VKAVISAKEEYKEFQLLKRQRVADLSSAAAPAKWAPEAPPSLSTSPGRVASPAAVITRAA
EQSRLLAPEASAPVPRPSAAAANNKPRAAAASEWETERCIAEFFFENKLDYSIADSVSYQ
QMLEALGGPGFRGPPADVLRDKWLQRLKSEILQKTKEIEKDWATTGCTILADSWTDNKLK
ALINFSVASPMGTFFLKTVDASSHFKTHRGLYDLFDEVIQEVGPENVVQIIADRNINYGS
TDKLVAQNYGGAIFWSPCASFCVNAMLDDFSKIDWVNQCICQAQTVTRFIYNSRWVLDLA
RKCVAGQELVCSGITKSVSDFLTLKSLLRHRPKLKQMFHSAEFSSSSYASRSIPCVEILD
DDELWRAVEEIAAVSEPLLRVMRDVSGGRQAIGYIYESMTKVTDSIRTYYIMDEGKCKSF
LDIVEQRWQTELHSPLHSAAAFLSPGIQYNPEVKFFRTIKEEFYQVLDKVLTTPDQRHDI
TAQLHAFRKAQGLFGSNIAKEARNNTPPGMWWEQYGDSAPSLQRAAVRITSQVCSTLTFQ
RDWGVILQNHYEKRNKLDKEALADQAYVHYNLTLHSEPKARRRPDADPIALDAVDMTSAW
VEDSDGPILTQWLDRFPSALDGGDLNTRQFGGSIFGTNDNLFGL

Transcript Sequence

Transcript ID

Zm00001d039328_T007
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:1958667:1965685:1 gene:Zm00001d039328 gene_biotype:protein_coding transcript_biotype:protein_coding description:hAT transposon superfamily
Sequence

GACGGGGAGCTCAAATCCGCGCGGTTTGTTTGCGGGTAGGGATGGGGGTTGGTTTGAAGG
GGAACGGCGACGAATCAATCGCCGCTCCGTCTTGCTGCTCTGCCCGAAAGTCGAAAGATG
TAGGTCCGATCCACCAGCGCCGGCCAGCTCGTGGCTGGTTCTCACTTGGGATTTGTTTGG
GAAGGGGGCAGCTCAAGCCAAGCGGAGCCTCGTTTCTTTGAACCGACTTAACTCACTGCC
TGCCAAATGCCGCAGGACCCTAGAAACTCAACACACGCTGTGAACTGTGATACATTTGCT
TCCAAGGCAGCTCGTAACTCCAATTTCCCCTTTTTTTTAATAATGGAAACAAGTTCCAGC
CCATTTTCATGCATTCAGCCTTACAAGTACATTACTTACAACTTCCTAAACAGCTAGGAA
AGGGTAAAGCATTTAAATGTTTGGGACATTAAACAATTTAAGCAGCCTTAATTCTAGCAT
AGATCGCCAACCATGATTTGTAAAAATCTTCATAGCTACCATCTCTAAGGATCGGCACAT
ATTGAGGATTTTTTTAGTGTGATTCTTCTTTCCGCAACATTCTCCAAAATTAAAACCAAT
ACGTTCCTCCTAAAAATAACCTATAGAATTGACGGTATGGGTTCATGATTAGAAACCACA
TCATTGGAGCAAAGCCAAATGGATTAAAACATTGCTACCACTTCAATTAAATTTTTTTAT
GTGTAGGCTATTTGTTGGATTCCCGGCCCCTCATAATATCATTAATATTAGAAGGGTTGT
CTATATGAAAGGCAAAGAGAATGATTTTCCATATGTTTCTAGCAACGTGACAATTCAAAA
AAATGTGTTGAATGCTCCAATTTTGATTAAAAAACTACACTTCAAATTTCTCTTCCACCT
TCATTTCAGAAGGTTGTCTTTAGTGAGAGTTAGGGATATTTGAATGCACTAGAGTTAATA
GTTAATGGATAAAATTAGCTAGAGACATCCAAACACTCTAGCTAATATTTTAGCTATTAA
CTATTTTTAGTAAATATCTACTAGTTAGCCGGCTATTTGTTAGCTAGCTAATTTCACTAG
CAATTTTCTAGCTAACTAACTATTAGAGCATCTCCAACAATGTCTCAAATCGAAATATAG
GGCTCTACACAGGAAAAACCACTCCAACAGTGCCTCAATTCAATAAATTTTGTCAAAAAA
CTATAGGGCACCCTCTCAAATGTCTCAAATATACTACACCGTAGTGGGCTGCCCTATAAT
CTAGATTTAGGGCTTTACTGTTGGAGCGGGGTGTTTTGTTGGTGCCCTAAATTGTATAAA
ATTTACTTATTTTTAAATTATAAGGCATTTTTATAGGTCATGTTGTTGGAGATGCTCTTA
GTCTAGTGCATTCAAACATCCCCTTTCCTCTCTAAATATTAAAAAAAAAAATTGAGCGGG
AGTGTTAGTTTCAATGTACATAAATTTTTTAATTTTTACGTGGAAACTAACATATCTATT
CGTTTTCAGACACCAATCCGAAGCCCTGCTGCTGCACCACAAATGCGTGAGAGAGACGCC
TGCTGGGAGTACTGCGACAAGCTGGATGGGAACAAGGTCCGGTGCAGGTTCTGCCACAAG
GTCCTCAACGGCGGCATCAGCAGGCTCAAGTTCCACCTGTCCCAGATCCCCAGCAAAGGG
GTGAACCCCTGCACCAAGGTGAAGGAAGACGTCGTCGACAGGGTGAAGGCCGTCATCTCG
GCCAAGGAAGAGTACAAGGAGTTCCAGCTCCTCAAGAGGCAGCGCGTCGCCGACCTGTCG
TCGGCTGCTGCCCCGGCGAAGTGGGCGCCGGAGGCTCCTCCGTCCCTGTCTACCTCTCCG
GGGCGAGTGGCCTCTCCTGCTGCTGTTATTACTCGTGCCGCTGAACAGAGTCGGCTTCTC
GCCCCGGAAGCGTCCGCTCCGGTGCCCAGACCATCTGCTGCTGCGGCAAACAACAAGCCA
CGCGCCGCCGCCGCTTCGGAATGGGAGACAGAACGATGTATAGCTGAGTTCTTTTTCGAG
AACAAGTTGGACTACAGCATAGCCGACTCGGTCTCATACCAGCAGATGCTCGAGGCGCTC
GGCGGTCCGGGATTCCGAGGGCCGCCAGCAGATGTTCTGCGGGACAAGTGGCTGCAGAGG
CTCAAGTCCGAGATCCTGCAGAAGACGAAGGAGATCGAGAAGGACTGGGCGACGACCGGC
TGCACGATACTGGCCGATTCGTGGACCGACAACAAGCTGAAAGCCCTGATCAACTTCTCC
GTGGCGTCTCCCATGGGCACGTTCTTCCTCAAGACGGTGGACGCCTCCTCGCACTTCAAG
ACGCACAGGGGCCTGTACGACCTCTTCGACGAGGTGATCCAGGAGGTGGGCCCGGAGAAC
GTGGTCCAGATCATCGCCGACAGGAACATCAACTACGGCAGCACGGACAAGCTGGTCGCG
CAGAACTACGGCGGCGCCATCTTCTGGTCCCCCTGCGCGTCGTTCTGCGTCAACGCCATG
CTGGACGACTTCTCCAAGATCGACTGGGTGAACCAGTGCATCTGCCAGGCGCAGACCGTG
ACGCGGTTCATCTACAACAGCAGGTGGGTCCTCGATCTCGCGAGGAAGTGCGTGGCGGGG
CAGGAGCTCGTCTGCTCGGGGATCACCAAGTCCGTGTCGGACTTCCTCACGCTGAAGTCC
CTGCTGAGGCACAGGCCGAAGCTGAAGCAGATGTTCCACAGCGCCGAGTTTTCGTCCTCG
TCGTACGCGAGCAGGTCGATACCGTGCGTCGAGATCCTGGACGACGACGAGCTCTGGAGG
GCGGTCGAAGAGATAGCCGCCGTCTCCGAACCTCTGCTCAGGGTCATGAGGGACGTCTCA
GGAGGCAGGCAGGCCATCGGCTACATATACGAGTCGATGACGAAGGTCACGGACTCTATC
AGAACGTACTACATAATGGACGAAGGGAAGTGCAAGTCGTTTCTGGACATAGTGGAGCAG
AGATGGCAGACGGAGCTGCACTCGCCTCTTCACTCGGCTGCCGCCTTTCTGAGCCCGGGC
ATCCAGTACAACCCGGAAGTTAAGTTCTTCCGCACTATCAAGGAGGAGTTCTACCAGGTC
CTGGATAAGGTTCTTACGACCCCTGACCAGAGGCATGATATCACCGCACAGTTGCACGCT
TTCCGCAAGGCACAAGGGCTGTTTGGTTCGAACATTGCTAAAGAGGCCCGCAACAATACC
CCTCCAGGCATGTGGTGGGAGCAGTACGGCGACTCAGCACCGTCGCTGCAACGCGCCGCC
GTCAGAATAACCAGCCAGGTGTGCAGCACGCTGACGTTCCAGAGGGACTGGGGCGTGATC
CTGCAGAACCACTACGAGAAGCGCAACAAGCTGGACAAGGAGGCCCTGGCCGACCAGGCC
TACGTGCACTACAACCTCACGCTGCACTCCGAGCCGAAGGCGAGGAGGAGGCCGGACGCG
GACCCGATCGCGCTGGACGCGGTCGACATGACGTCGGCGTGGGTGGAGGACTCCGACGGC
CCCATCCTCACCCAGTGGCTCGACAGGTTCCCGTCGGCGCTGGATGGCGGGGACCTGAAC
ACGAGACAGTTCGGTGGATCCATCTTCGGCACCAACGACAACCTGTTCGGCCTCTGATGG
CTTCCGGCTCCAGGTCTGTGTCCGACGCCGTGCTTGTTGTCTGTGCTGTACAAGTGGTCG
TGTATGTAGCCATGTACTGTAGGTCTTTTGTAGTAGTTCCATCTCTGATAGTGTAGTGTA
CATCGTAGAATCTAGATTGATAACAGGAGAAGAACTAATTGTTGCTCATATTTGGTCTTC
AGGGGGTGGGGGGACATCTGCCTGTTCTCATTTGTTTTGATTAACACGAGAGCCATGAAG
CTGCTGAAAATGTGCTAAGCATCCATTTCTTCTGCAGTCATCATTGCTATCTTCTTCAGT
GTATTTACCTGGTGCCTTGGTGGGTGCACATACATAGCTGACACATGGGGGCCACTCTAC
AAGAATGACTCGGGAAGAGGATAACGTAGGCCAACCACAATTATTTAAAAACAACAGGAG
GAGGAAGATAATCATGATGCACCTATCAGTCATCACTGTCAGCACTAACTCCGGAAAGAA
ATATCCACCCGCTCTGATCTTATCCGTTTCTCTGTAGCATAGAAGGAGACAAACGCCATC
GCCTTTTCCATTTGTTGCGGAAGTAAATATAAACTGCGAGCTATCATATCAAGTTACTGT
GAAGAGTGAAGAGATATCACAGGGACCTCTTCAGGCTTCAAGGCAGATCCGCAGCAGATG
GAGGCGAAGAGCAGGCTGCCGGAGGTGACCATCGTCCCGGCGGCACGGCCGTTGGCTGGC
GACGGCACAGTCGACGCGGCAAAGGCGGCGGCAGGCAAGGAGCCCGTAAGCCCGGGCACT
CCGTCCTCGGTGGCCGCCGGCCGCAGCAGCTGTGAGGAGAGGCGCGCGGTGGACGGCGTC
GCCCTGCCTGGGTGGAAGCTCGACGCCCTCTGCCAGGAGTCCTGCCCGTCGCCGGCCATG
AGGGCGCGCTTCCCCTACTACTTCTGAAGCTTCCCGTTGCAGTCCTGCGTGATCGAGTTC
TTGAGCGGCGACATCTGGTGCATGCTCTTGACGACTGATGGCGTTCTTGGGTGTTTTCCT
TGCTCAGGGTTTCCCTTTCGTGCACGTTCATGTATGTATGTTAGTATGTATTGTGTGTAT
AAAGATCTGCGAGCTTTGTGTATAACGCAAATGATGAACCTTCGGGCAACTGCGTGTATG
GTTGTATCTGTCTATCTGACATAATTTGAGCACACTGTATGTATCGTTCTCATCGAAA