Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d039306_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:3:1424956:1430774:-1 gene:Zm00001d039306 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MYB-transcription factor 117 description:Myb-related protein 3R-1
Sequence

ATGCCGAGTGATAAAGCAAAAGCTCCAAAGAAGAAGGGCGAAGAGGATCCTGGAATCCCG
CCAGCTCCCTGTGAAGGAGAAATTAGCCATGAGCCACATAGACAACGGTCACTCAATGGG
AGGACCACTGGTCCGACCCGGCGTTCAACCAAAGGAAATTGGACACCCGAAGAGGATGCT
ATATTGTCCCGTGCGGTTCAGACATACCAAGGGAAAAACTGGAAAAAGATAGCGGAAAGT
TTTCCAGACAGAACCGATGTACAATGTTTGCACAGGTGGCAAAAGGTTCTAAACCCTGAA
TTGGTCAAAGGGCCATGGTCCAAAGAAGAAGACGAAATCATAGTTCAGATGGTAAACAAA
TACGGGCCAAAGAAATGGTCGGCCATCGCTCAAGCTTTGCCTGGACGCATAGGAAAGCAA
TGCCGGGAGCGGTGGCACAATCATCTTAACCCAGCCATAAACAAGGAGGCATGGACGCAA
GAAGAGGAGATTACTCTTATTCATGCTCATAGGATGTATGGAAATAAATGGGCCGAACTT
ACGAAATTTTTACCTGGAAGGACGGACAATGCAATTAAAAATCACTGGAACAGTTCAGTG
AAGAAAAAGGTCGATTCGTACATATCTTCTGGTTTACTTTCACAAGTCCCATGCCTCTCT
CTGATTGAATGTCCTGCACAATGTGACTCTTTATCGGCTATGGACCAACAAAACAACGGA
GGTACTGATTGCAATGACCAGAACACTAGCGTGGTCTTAAGCTCTGATTTACAAGTAAAT
GTGGATGCCAACAAGAAAGAAGCACATGACTCTCACTCGTCCTTGTGTCAAGGGGTATGC
TATCCTTCCACAGAGACTGTAGGATCTGTTTTGCCTGATGACCTGGAGATGGATATGGAT
GAAGGATCAGGAAACTCTATTTTTGCAGACGATCAAACTCTTTGTAGCACATCAAATCAA
GAACAATCTATGGTGCCATTTGTTGTTGCACAGGAAATGCCTGTCTCTGTGCTATCAAGT
GTTTCTAGCGCTGAGCAGAAACGGCACTTAATCTCTGATGCCAAAAGCTTGAAATCCGAA
CTTTGGAAAGATGTTTGTTTGCAAACTCTTATTACAGGAGATACAGATGACCCTGATGCT
TCTTCAAGATTAAATAACCCAGATTCTTCTAAAATGGACACCAATTTTTTGAAAGAGGCC
TACCCATTACACACACCAAATCCATCCAGTGTGATTGAAACTGTATATGAACCGATGGCG
TTGGTGACAATCTCTCCCCCTTTTATATGTTCAGATGGTTTGTCTTTCGCACCCGAAAAT
AGATCTAAGCCAGGAGAAATGTCAGACTGTGAAGCAGAGATGGTCACATGCTCAAACAAT
TTTTTTGGTAATGCCGAGCAATCTGCTAAACTTGCCAGCAGTGATGACAGGCCAGAGGCT
TTCACAATGACTGAGAGCACTACAAACTGTGGGGGTGAACAATTGACAGATGCCAAAGAA
CCTGTGGCCAGTACAGCAAAAGAACGGTTATCGAAAGACATCGAGACTATGCCAGATAAA
AAGAAGGGTGAGGGGGCTCTATTCTATGAACCTCCTCGATTCCCTGGTTTGGATGTCCCG
TTTATCAGTTGCGATCTTGTAACTTCTGCTGATCTGCAAGAATTTAGTCCCCTTGGAATT
AGGCAGTGGATGCGGTCGACCATGAATGTCCCAACTCCTTTAAGATTATGGGGCTCTCCA
ACACATGATGAAAGCCCAGATGCACTAAAAACTGCTGCTGAAAGCTTCCCATGCACAAGT
TCAATAATGAAAAAAAGACAGAGAAGTCTATTGTCCCCTACTCCAGATGAAAGAATTGAG
AAGAAATCTGGGATTGCAAAGGGGGTGACGGACATCTCCTATATGATAACGGCCACATGT
TCCATGAATGCAACCAATGATGAAGACATTGTTACTGAATCAGCTGTGTGTGCTAAGCAA
CCTTCTTTGAAACATCTAGACAAGAAGCTTGAGTTCTCTGACATTAACAAGGAAAACTCT
GATGGAGCATCTGAACAGGCCAAAGATGCACAAAACACACAACTCGTGGATGAGCAACAT
TCCTCACCAAATGTTGTGAATCCTAACACTGATCTACAAGACAATATACAACCTGTACAG
ATTCTTGTAGAGCAAAGCAGCAATAACCTTATTTCCTCTGATCATGGTGCAAAGCCATCC
TGTAAGGAAGTGATTAGTTCAAAATCAAAGCCTACAAAACTACTTGTTGAAAAATCATCA
CCATGTATCAACGTGGATTACGAATATGTGAATTTGTAA

Peptide Sequence

PEP ID

Zm00001d039306_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:3:1424956:1430774:-1 gene:Zm00001d039306 transcript:Zm00001d039306_T005 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MYB-transcription factor 117 description:Myb-related protein 3R-1
Sequence

MPSDKAKAPKKKGEEDPGIPPAPCEGEISHEPHRQRSLNGRTTGPTRRSTKGNWTPEEDA
ILSRAVQTYQGKNWKKIAESFPDRTDVQCLHRWQKVLNPELVKGPWSKEEDEIIVQMVNK
YGPKKWSAIAQALPGRIGKQCRERWHNHLNPAINKEAWTQEEEITLIHAHRMYGNKWAEL
TKFLPGRTDNAIKNHWNSSVKKKVDSYISSGLLSQVPCLSLIECPAQCDSLSAMDQQNNG
GTDCNDQNTSVVLSSDLQVNVDANKKEAHDSHSSLCQGVCYPSTETVGSVLPDDLEMDMD
EGSGNSIFADDQTLCSTSNQEQSMVPFVVAQEMPVSVLSSVSSAEQKRHLISDAKSLKSE
LWKDVCLQTLITGDTDDPDASSRLNNPDSSKMDTNFLKEAYPLHTPNPSSVIETVYEPMA
LVTISPPFICSDGLSFAPENRSKPGEMSDCEAEMVTCSNNFFGNAEQSAKLASSDDRPEA
FTMTESTTNCGGEQLTDAKEPVASTAKERLSKDIETMPDKKKGEGALFYEPPRFPGLDVP
FISCDLVTSADLQEFSPLGIRQWMRSTMNVPTPLRLWGSPTHDESPDALKTAAESFPCTS
SIMKKRQRSLLSPTPDERIEKKSGIAKGVTDISYMITATCSMNATNDEDIVTESAVCAKQ
PSLKHLDKKLEFSDINKENSDGASEQAKDAQNTQLVDEQHSSPNVVNPNTDLQDNIQPVQ
ILVEQSSNNLISSDHGAKPSCKEVISSKSKPTKLLVEKSSPCINVDYEYVNL

Transcript Sequence

Transcript ID

Zm00001d039306_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:1424956:1430774:-1 gene:Zm00001d039306 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MYB-transcription factor 117 description:Myb-related protein 3R-1
Sequence

AATCGCCTCCGCGGCTCCGCCTCCCCCTCCCCCAAATTTGAAACCTCCGAGGCGGACGCG
AGGCGAAGCCGTGCGTCGGTCATCGAGACGGCCGGCTGGGCGACCGCGCCGCCGCCTCTC
TCCTCTCGTTGCGTGCCGCGGGGGTTGCCCGCACTTGGGCGCGCGCTCGGGCGCGGGGTT
GGATGCAGCTCCGCCGACGTAGGTGCTCGTCGATCGCGTCGGCCACACCGGGACGGTGGT
AATCATGCCGAGTGATAAAGCAAAAGCTCCAAAGAAGAAGGGCGAAGAGGATCCTGGAAT
CCCGCCAGCTCCCTGTGAAGGAGAAATTAGCCATGAGCCACATAGACAACGGTCACTCAA
TGGGAGGACCACTGGTCCGACCCGGCGTTCAACCAAAGGAAATTGGACACCCGAAGAGGA
TGCTATATTGTCCCGTGCGGTTCAGACATACCAAGGGAAAAACTGGAAAAAGATAGCGGA
AAGTTTTCCAGACAGAACCGATGTACAATGTTTGCACAGGTGGCAAAAGGTTCTAAACCC
TGAATTGGTCAAAGGGCCATGGTCCAAAGAAGAAGACGAAATCATAGTTCAGATGGTAAA
CAAATACGGGCCAAAGAAATGGTCGGCCATCGCTCAAGCTTTGCCTGGACGCATAGGAAA
GCAATGCCGGGAGCGGTGGCACAATCATCTTAACCCAGCCATAAACAAGGAGGCATGGAC
GCAAGAAGAGGAGATTACTCTTATTCATGCTCATAGGATGTATGGAAATAAATGGGCCGA
ACTTACGAAATTTTTACCTGGAAGGACGGACAATGCAATTAAAAATCACTGGAACAGTTC
AGTGAAGAAAAAGGTCGATTCGTACATATCTTCTGGTTTACTTTCACAAGTCCCATGCCT
CTCTCTGATTGAATGTCCTGCACAATGTGACTCTTTATCGGCTATGGACCAACAAAACAA
CGGAGGTACTGATTGCAATGACCAGAACACTAGCGTGGTCTTAAGCTCTGATTTACAAGT
AAATGTGGATGCCAACAAGAAAGAAGCACATGACTCTCACTCGTCCTTGTGTCAAGGGGT
ATGCTATCCTTCCACAGAGACTGTAGGATCTGTTTTGCCTGATGACCTGGAGATGGATAT
GGATGAAGGATCAGGAAACTCTATTTTTGCAGACGATCAAACTCTTTGTAGCACATCAAA
TCAAGAACAATCTATGGTGCCATTTGTTGTTGCACAGGAAATGCCTGTCTCTGTGCTATC
AAGTGTTTCTAGCGCTGAGCAGAAACGGCACTTAATCTCTGATGCCAAAAGCTTGAAATC
CGAACTTTGGAAAGATGTTTGTTTGCAAACTCTTATTACAGGAGATACAGATGACCCTGA
TGCTTCTTCAAGATTAAATAACCCAGATTCTTCTAAAATGGACACCAATTTTTTGAAAGA
GGCCTACCCATTACACACACCAAATCCATCCAGTGTGATTGAAACTGTATATGAACCGAT
GGCGTTGGTGACAATCTCTCCCCCTTTTATATGTTCAGATGGTTTGTCTTTCGCACCCGA
AAATAGATCTAAGCCAGGAGAAATGTCAGACTGTGAAGCAGAGATGGTCACATGCTCAAA
CAATTTTTTTGGTAATGCCGAGCAATCTGCTAAACTTGCCAGCAGTGATGACAGGCCAGA
GGCTTTCACAATGACTGAGAGCACTACAAACTGTGGGGGTGAACAATTGACAGATGCCAA
AGAACCTGTGGCCAGTACAGCAAAAGAACGGTTATCGAAAGACATCGAGACTATGCCAGA
TAAAAAGAAGGGTGAGGGGGCTCTATTCTATGAACCTCCTCGATTCCCTGGTTTGGATGT
CCCGTTTATCAGTTGCGATCTTGTAACTTCTGCTGATCTGCAAGAATTTAGTCCCCTTGG
AATTAGGCAGTGGATGCGGTCGACCATGAATGTCCCAACTCCTTTAAGATTATGGGGCTC
TCCAACACATGATGAAAGCCCAGATGCACTAAAAACTGCTGCTGAAAGCTTCCCATGCAC
AAGTTCAATAATGAAAAAAAGACAGAGAAGTCTATTGTCCCCTACTCCAGATGAAAGAAT
TGAGAAGAAATCTGGGATTGCAAAGGGGGTGACGGACATCTCCTATATGATAACGGCCAC
ATGTTCCATGAATGCAACCAATGATGAAGACATTGTTACTGAATCAGCTGTGTGTGCTAA
GCAACCTTCTTTGAAACATCTAGACAAGAAGCTTGAGTTCTCTGACATTAACAAGGAAAA
CTCTGATGGAGCATCTGAACAGGCCAAAGATGCACAAAACACACAACTCGTGGATGAGCA
ACATTCCTCACCAAATGTTGTGAATCCTAACACTGATCTACAAGACAATATACAACCTGT
ACAGATTCTTGTAGAGCAAAGCAGCAATAACCTTATTTCCTCTGATCATGGTGCAAAGCC
ATCCTGTAAGGAAGTGATTAGTTCAAAATCAAAGCCTACAAAACTACTTGTTGAAAAATC
ATCACCATGTATCAACGTGGATTACGAATATGTGAATTTGTAAGATAACTGGTCTCACTA
GTGTTCCTTTGTTTGAATTATCTGTTTCTTTTGTTAGCTAATCAGTTCAGGCTTCAGCGT
GTATGAAGCTAAGCTGTGGCAGGTTCTTTTTGTCAATATTTCTTATGAATTGCTGCTTTT
GCTAGATTGGCTGATACCCCAGGTATCAAAAGAGGACTCGAATCTCCATCTGCATGGAAG
TCTCCTTGGTATATCGATATGCACATGCACTTTCAGGGTTTTGTCAGCCCAGCAGACAGA
ACTTATGACGCGTTAGGATTAGTGAATCGTTTAAGCAAGCACAGTGCTGCTGCTGCAGTG
GAGGCCTGTGAGATGCTAGCAAGTGGCAACACGACTTCTGATAAGGAAAACAAGGATAAT
ACGGATGGCAAGGAACTAGTGACAAGAAAATCACAGATTAAGATCATGGCCGAGGCGCGA
GTCCTGGATTTCGACGAATCTCCCGCACCTGCAAGAACAGCAGATAAGAAACTTGGCAGC
TGTCACCGGAGATCTGTTAGCTCACCCATTCTTCCTTCCCCCAACCTTAGAAGTTTCCGA
TAGGTACACCATATATGGCATCATCGTACATTACCCACCTGCATGTATTGGTGAACTCTA
TTGTTATTATGTCTCCTTAGAGCGCGTTGTTGAAACTATTGGAGCGTTTCCTT