Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d039304_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:3:1395836:1402684:-1 gene:Zm00001d039304 gene_biotype:protein_coding transcript_biotype:protein_coding description:Thioesterase family protein

Sequence

ATGGCAGGCTCCATGGTGGACCGCGCCACCAGCGACATGCTCATCAGCCCGGACTGGGCT
AAGAACATGGAGATCTGCGACATATGCAACCGCGACCCTGGGCAATCGAAAGATGTCGTC
AAGGCACTGAAGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCGCTAACT
TTGTTGGAAACTGTTATTAAAAACTGTGGGGATATACTTCACATGCATGTCGCAGAGAGA
GATATATTGCATGAGATGGTGAAGATAGTGAAGAAAAAGTCTGATCCTCGTGTTAAAGAG
AAAGTATTGGTGCTGATAGATACATGGCAAGAAGCATTTGGGGGACCACGTGCAAGATAT
CCACAATACTATGCAGCATACCATGAGTTGGTGCGTGCTGGAGCTGAATTCCCCAAGAGA
CCAGAGAAACCTGCACCTTTGTTTAATGGTCAGTCTCAAGCAGCAAGGAATATGCGTAGT
CCTGACCAACAGGATGCTGCAGAATCTTCTACTGCCAATGATTTCCCTGCTTTGAGCATG
TCAGAGATTCAGAATGCTCGTGGTATTATGGATGTACTTGCCGAGATGCTGAATGCTTTA
GGCCCTGGAAACAGAGAGGGATTAAGGCAGGAGGTAATTGTGGAACTCGTGGACCAATGC
CGCACTTACAAGCAGAGAGTAGTGCAGCTAGTTAATTCTACCACGGATGAGGAACTTATG
TCGCAGGGGCTCGCACTGAATGATGATTTGCAGAGTGTTCTAGCAAAACATGATGCAATA
GCAGCAGGCATTGCAGTTCGAGTGGAGAAAAAACCAAAGTCTTTGCAATCACTTGTAGAG
ACTGAGGATTCGGCAAACCAGGACTCCAAAAAGGAGCAGGGACTCATAGATATTGAGGAT
CCCACAAGCCAAGATGCTGCAAAAGAGCCAAATCAAAGTACAAGTGACCAATCTCCTTTT
GAGCAATTAGCTCTTCCAGCACCACCAGTGTCAAATGGCGCAGCAACAAAATCTGACCTT
GGCATTGATCTTCTGAGCTGGGATGATACCCCTGCTACAGCACAAAATCCACTAGCTCTT
GTTCCTGTCACAGATCCTCTTGCTGACTCGACTTCATCGAATCAAAATGCACTAGCAATT
GTGGACACATTTTCACAGAACAGCACCGTTAACAGCAACACTCAAGCTGCTGACCCCTTT
GGTCTCAATCCAAGTTCTGCTATTCCAGGATCTCAGGCATACAACACTCCAACTCAGCAG
CATTTCCAGTCGCAACAGGCGACACTGTATCCGAACCAGGCATTGCAACCACAAGTTAAC
CACATGGGAGTTCCACAAAGGCAGCCAATGTACAGCAACCAGTCAGGGATTGGGGTGGCG
CCAACACTGATGCAGGCAGGCTTGGGGAACCAGCAGCCTCCACAGATGTATGGCGGCGGA
TCGCAGGCAGCCATGATGTACCCGCAACAAATGCCAGTGGCGCCGCAGCAGCCGATGTAT
GGTGGTGGTGGTGGTCGTCTGGCAGGGTACATGCAGCATCCTGCTGTGGCCGCTGCGCAC
TACTACAGCAACCTGGGGACGGCGGGAATGTATGGGTACCCCGGCGCGAACGGGCTGTCC
CAGAGCATGTATGGCCTCTCGGTGCAGGATAACTCG

Peptide Sequence

PEP ID

Zm00001d039304_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:3:1395836:1402684:-1 gene:Zm00001d039304 transcript:Zm00001d039304_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:Thioesterase family protein

Sequence

MAGSMVDRATSDMLISPDWAKNMEICDICNRDPGQSKDVVKALKKRIGHKNPKVQLLALT
LLETVIKNCGDILHMHVAERDILHEMVKIVKKKSDPRVKEKVLVLIDTWQEAFGGPRARY
PQYYAAYHELVRAGAEFPKRPEKPAPLFNGQSQAARNMRSPDQQDAAESSTANDFPALSM
SEIQNARGIMDVLAEMLNALGPGNREGLRQEVIVELVDQCRTYKQRVVQLVNSTTDEELM
SQGLALNDDLQSVLAKHDAIAAGIAVRVEKKPKSLQSLVETEDSANQDSKKEQGLIDIED
PTSQDAAKEPNQSTSDQSPFEQLALPAPPVSNGAATKSDLGIDLLSWDDTPATAQNPLAL
VPVTDPLADSTSSNQNALAIVDTFSQNSTVNSNTQAADPFGLNPSSAIPGSQAYNTPTQQ
HFQSQQATLYPNQALQPQVNHMGVPQRQPMYSNQSGIGVAPTLMQAGLGNQQPPQMYGGG
SQAAMMYPQQMPVAPQQPMYGGGGGRLAGYMQHPAVAAAHYYSNLGTAGMYGYPGANGLS
QSMYGLSVQDNS

Transcript Sequence

Transcript ID

Zm00001d039304_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:1395836:1402684:-1 gene:Zm00001d039304 gene_biotype:protein_coding transcript_biotype:protein_coding description:Thioesterase family protein

Sequence

GGGGGCAAAAAGGGAACGAAAAGAAAGGGAGGGACAGAGGTGCAGGGCCAACCTGCGTGG
TGCGGGTGGTTTCGAGCACGGGCAAGCGCCACCCCGCTCGCTGCCGATCCCAATCCGGCT
ACAGCAGCGGCCGCCGGCCGCCCCGCCTGCGGGGCCTCCCTCCGACCGTTCCCCCCGCCC
TCCATGGCAGGCTCCATGGTGGACCGCGCCACCAGCGACATGCTCATCAGCCCGGACTGG
GCTAAGAACATGGAGATCTGCGACATATGCAACCGCGACCCTGGGCAATCGAAAGATGTC
GTCAAGGCACTGAAGAAACGGATTGGCCACAAGAATCCAAAAGTTCAACTTCTTGCGCTA
ACTTTGTTGGAAACTGTTATTAAAAACTGTGGGGATATACTTCACATGCATGTCGCAGAG
AGAGATATATTGCATGAGATGGTGAAGATAGTGAAGAAAAAGTCTGATCCTCGTGTTAAA
GAGAAAGTATTGGTGCTGATAGATACATGGCAAGAAGCATTTGGGGGACCACGTGCAAGA
TATCCACAATACTATGCAGCATACCATGAGTTGGTGCGTGCTGGAGCTGAATTCCCCAAG
AGACCAGAGAAACCTGCACCTTTGTTTAATGGTCAGTCTCAAGCAGCAAGGAATATGCGT
AGTCCTGACCAACAGGATGCTGCAGAATCTTCTACTGCCAATGATTTCCCTGCTTTGAGC
ATGTCAGAGATTCAGAATGCTCGTGGTATTATGGATGTACTTGCCGAGATGCTGAATGCT
TTAGGCCCTGGAAACAGAGAGGGATTAAGGCAGGAGGTAATTGTGGAACTCGTGGACCAA
TGCCGCACTTACAAGCAGAGAGTAGTGCAGCTAGTTAATTCTACCACGGATGAGGAACTT
ATGTCGCAGGGGCTCGCACTGAATGATGATTTGCAGAGTGTTCTAGCAAAACATGATGCA
ATAGCAGCAGGCATTGCAGTTCGAGTGGAGAAAAAACCAAAGTCTTTGCAATCACTTGTA
GAGACTGAGGATTCGGCAAACCAGGACTCCAAAAAGGAGCAGGGACTCATAGATATTGAG
GATCCCACAAGCCAAGATGCTGCAAAAGAGCCAAATCAAAGTACAAGTGACCAATCTCCT
TTTGAGCAATTAGCTCTTCCAGCACCACCAGTGTCAAATGGCGCAGCAACAAAATCTGAC
CTTGGCATTGATCTTCTGAGCTGGGATGATACCCCTGCTACAGCACAAAATCCACTAGCT
CTTGTTCCTGTCACAGATCCTCTTGCTGACTCGACTTCATCGAATCAAAATGCACTAGCA
ATTGTGGACACATTTTCACAGAACAGCACCGTTAACAGCAACACTCAAGCTGCTGACCCC
TTTGGTCTCAATCCAAGTTCTGCTATTCCAGGATCTCAGGCATACAACACTCCAACTCAG
CAGCATTTCCAGTCGCAACAGGCGACACTGTATCCGAACCAGGCATTGCAACCACAAGTT
AACCACATGGGAGTTCCACAAAGGCAGCCAATGTACAGCAACCAGTCAGGGATTGGGGTG
GCGCCAACACTGATGCAGGCAGGCTTGGGGAACCAGCAGCCTCCACAGATGTATGGCGGC
GGATCGCAGGCAGCCATGATGTACCCGCAACAAATGCCAGTGGCGCCGCAGCAGCCGATG
TATGGTGGTGGTGGTGGTCGTCTGGCAGGGTACATGCAGCATCCTGCTGTGGCCGCTGCG
CACTACTACAGCAACCTGGGGACGGCGGGAATGTATGGGTACCCCGGCGCGAACGGGCTG
TCCCAGAGCATGTATGGCCTCTCGGTGCAGGATAACTCGTC