Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d039276_T003
CDS Infomation	cds chromosome:B73_RefGen_v4:3:918812:921348:-1 gene:Zm00001d039276 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ubiquitin ligase SINAT3
Sequence	ATGGAACCACTTGTGAGAAGGGAGTCTACATTTAATTTTAAAACTGTTACACTACCTGTG TCTACTGGATGGAGGGTTCCATTGCCCATCATCCACCAGCGAAGAAACATAGGGAAAAGG GAAAAAAGATGGTCGTGCTGCCGCGCCATTATAGCCCCGGAATCCGCGGCGCGCCCCCGC CTTCCGTCCTCTCTCCCGCCACAAATCGCCGGGCGCCCGCGCCGCCCCAGCCTCCCTTCT CCCTCCCTCCCTCATCCCCTCCGTGTCCCGGAGCCCAGGGAGCGGAGGCGGGCGGGCCGG CGGGCGGCCATGGACGTGGACTGCGTCTCGCTGCCCGACGCCCCGGCGGGCGACGTGGAT GGCGGCGCCGCCCGGCCGTGGCCCAAGGCCGTGACCAACGGCGGCGTCCACGAGCTGCTG GAGTGCCCCGTGTGCACCAACTCCATGTTCCCGCCGATCCACCAGTGCCCCAATGGACAC ACGCTGTGTTCCACATGCAAGGCCAGAGTACACAACCGTTGCCCTACCTGCAGGCAAGAG CTGGGCGACATCAGGTGTCTGGCGCTGGAGAAAGTCGCCGAGTCGCTGGAGCTCCCCTGC AGGTACTACTCGCTGGGGTGCCCGGAGATCATGCCTTACTACAGCAAGATAAAGCACGAG GCGCAGTGCGGCCTGAGACCGTACAACTGCCCCTACGCCGGCTCCGAGTGCGGCGCGGCC GGCGACATCCCTTCCCTCGTCTCCCACCTGAGGGACGACCACAAGGTGGACATGCACAGC GGCTGCACCTTCAACCACAGATACGTGAAATCCAACCCGCGGGAGGTGGAGAACGCCACC TGGATGCTGACGGTGTTCCACTGCTTCGGCCACTACTTCTGCCTGCACTTCGAGGCGTTC CAGCTCGGGATGGCGCCCGTGTACATGGCCTTCCTCCGCTTCATGGGGGACGAGAACGAG GCCAAGAACTACAGCTACAGCCTCGAGGTCGGCGCCAACGGGAGGAAGATGGTGTGGGAG GGCACCCCAAGGAGCGTCCGCGACAGCCACCGCAAGGTGAGGGACAGCCACGACGGCCTC ATCATCCAGAGGAACATGGCGCTCTTCTTCTCCGGCGGGGACCGGAAGGAGCTCAAGCTC AGGATCACCGGACGGATCTGGAAAGAGCAGCAGACACCAGACGGCGCATGCGCCGCGAGG CAAACAATCTCCTCTTCTCTCCCCAGATTCACTCACCGTCCGTCCGTCCAGGGAGCCATG GCAGCAGCAGCAGCAGCCTGCATCTGTCTGCAGCTCTCTCTCCCAAGCAACCATTCTTCC TCTGCATGTCCTCCAGCATACAGGAAGCGTGTCGCGCTAGCCCCAGGGAGAGGAAACCGT CTTCTCTGCACTGCATCTGGCGCCTCTTCTTCTTCTTCTGTGGTGGTGACCAAGGAGCAG GAGGAAGGATCTCCTGAGCCCGAAATCTTTAGCTACAAAGACGACCCCAACTTCAGGGGC TGCAAGGGCTGCGGCAGGGACGAGCTTCAGAGGGGCTGCAATGGACAAGGCCGGATCCAG GGCGGCATAGCCGCCGTCCCGGGCTTCGGCTGGTGGCCCATCAAGGCGTACCGGCCGTGC CCCGGCTTCGTCGCGTCCGGCGGCCGCTACCGGCGCCAGGGCCAAAGCATGGACGACGTT GCATCCGGCAGGGGGAAAAAGAAACCCTCTCCCGCCAAAAAACAAGCTTAA

Peptide Sequence

PEP ID	Zm00001d039276_P003
PEP Infomation	pep chromosome:B73_RefGen_v4:3:918812:921348:-1 gene:Zm00001d039276 transcript:Zm00001d039276_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ubiquitin ligase SINAT3
Sequence	MEPLVRRESTFNFKTVTLPVSTGWRVPLPIIHQRRNIGKREKRWSCCRAIIAPESAARPR LPSSLPPQIAGRPRRPSLPSPSLPHPLRVPEPRERRRAGRRAAMDVDCVSLPDAPAGDVD GGAARPWPKAVTNGGVHELLECPVCTNSMFPPIHQCPNGHTLCSTCKARVHNRCPTCRQE LGDIRCLALEKVAESLELPCRYYSLGCPEIMPYYSKIKHEAQCGLRPYNCPYAGSECGAA GDIPSLVSHLRDDHKVDMHSGCTFNHRYVKSNPREVENATWMLTVFHCFGHYFCLHFEAF QLGMAPVYMAFLRFMGDENEAKNYSYSLEVGANGRKMVWEGTPRSVRDSHRKVRDSHDGL IIQRNMALFFSGGDRKELKLRITGRIWKEQQTPDGACAARQTISSSLPRFTHRPSVQGAM AAAAAACICLQLSLPSNHSSSACPPAYRKRVALAPGRGNRLLCTASGASSSSSVVVTKEQ EEGSPEPEIFSYKDDPNFRGCKGCGRDELQRGCNGQGRIQGGIAAVPGFGWWPIKAYRPC PGFVASGGRYRRQGQSMDDVASGRGKKKPSPAKKQA

Transcript Sequence

Transcript ID	Zm00001d039276_T003
Transcript Infomation	cdna chromosome:B73_RefGen_v4:3:918812:921348:-1 gene:Zm00001d039276 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ubiquitin ligase SINAT3
Sequence	ATGGAACCACTTGTGAGAAGGGAGTCTACATTTAATTTTAAAACTGTTACACTACCTGTG TCTACTGGATGGAGGGTTCCATTGCCCATCATCCACCAGCGAAGAAACATAGGGAAAAGG GAAAAAAGATGGTCGTGCTGCCGCGCCATTATAGCCCCGGAATCCGCGGCGCGCCCCCGC CTTCCGTCCTCTCTCCCGCCACAAATCGCCGGGCGCCCGCGCCGCCCCAGCCTCCCTTCT CCCTCCCTCCCTCATCCCCTCCGTGTCCCGGAGCCCAGGGAGCGGAGGCGGGCGGGCCGG CGGGCGGCCATGGACGTGGACTGCGTCTCGCTGCCCGACGCCCCGGCGGGCGACGTGGAT GGCGGCGCCGCCCGGCCGTGGCCCAAGGCCGTGACCAACGGCGGCGTCCACGAGCTGCTG GAGTGCCCCGTGTGCACCAACTCCATGTTCCCGCCGATCCACCAGTGCCCCAATGGACAC ACGCTGTGTTCCACATGCAAGGCCAGAGTACACAACCGTTGCCCTACCTGCAGGCAAGAG CTGGGCGACATCAGGTGTCTGGCGCTGGAGAAAGTCGCCGAGTCGCTGGAGCTCCCCTGC AGGTACTACTCGCTGGGGTGCCCGGAGATCATGCCTTACTACAGCAAGATAAAGCACGAG GCGCAGTGCGGCCTGAGACCGTACAACTGCCCCTACGCCGGCTCCGAGTGCGGCGCGGCC GGCGACATCCCTTCCCTCGTCTCCCACCTGAGGGACGACCACAAGGTGGACATGCACAGC GGCTGCACCTTCAACCACAGATACGTGAAATCCAACCCGCGGGAGGTGGAGAACGCCACC TGGATGCTGACGGTGTTCCACTGCTTCGGCCACTACTTCTGCCTGCACTTCGAGGCGTTC CAGCTCGGGATGGCGCCCGTGTACATGGCCTTCCTCCGCTTCATGGGGGACGAGAACGAG GCCAAGAACTACAGCTACAGCCTCGAGGTCGGCGCCAACGGGAGGAAGATGGTGTGGGAG GGCACCCCAAGGAGCGTCCGCGACAGCCACCGCAAGGTGAGGGACAGCCACGACGGCCTC ATCATCCAGAGGAACATGGCGCTCTTCTTCTCCGGCGGGGACCGGAAGGAGCTCAAGCTC AGGATCACCGGACGGATCTGGAAAGAGCAGCAGACACCAGACGGCGCATGCGCCGCGAGG CAAACAATCTCCTCTTCTCTCCCCAGATTCACTCACCGTCCGTCCGTCCAGGGAGCCATG GCAGCAGCAGCAGCAGCCTGCATCTGTCTGCAGCTCTCTCTCCCAAGCAACCATTCTTCC TCTGCATGTCCTCCAGCATACAGGAAGCGTGTCGCGCTAGCCCCAGGGAGAGGAAACCGT CTTCTCTGCACTGCATCTGGCGCCTCTTCTTCTTCTTCTGTGGTGGTGACCAAGGAGCAG GAGGAAGGATCTCCTGAGCCCGAAATCTTTAGCTACAAAGACGACCCCAACTTCAGGGGC TGCAAGGGCTGCGGCAGGGACGAGCTTCAGAGGGGCTGCAATGGACAAGGCCGGATCCAG GGCGGCATAGCCGCCGTCCCGGGCTTCGGCTGGTGGCCCATCAAGGCGTACCGGCCGTGC CCCGGCTTCGTCGCGTCCGGCGGCCGCTACCGGCGCCAGGGCCAAAGCATGGACGACGTT GCATCCGGCAGGGGGAAAAAGAAACCCTCTCCCGCCAAAAAACAAGCTTAACCCCTCTAG CTAGTTTATGTTCATCAGGTGAATTCAGAATCTACCCAAGATGGGAGGGAACTGGGGGAA GCTCAAGTTATTCAGGAACAGCAGTTTTTTTTGGGTCCACAACGCCAATGTATATGCACT AGTTTGGAGTACTGTTTGCAGAAACAACAATTGTATCAGTAGCTTGGAACATCTGACTGT ACCCTAATTGTATTATTGTCTTCATCAAGTGGCGAATGCAGGATCTTGCACTGGTATAAG CAA