Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d039274_T003
CDS Infomation	cds chromosome:B73_RefGen_v4:3:903701:918970:1 gene:Zm00001d039274 gene_biotype:protein_coding transcript_biotype:protein_coding description:4-coumarate--CoA ligase-like 1
Sequence	ATGGCGACTCCGTCGCTGCCGACGCAGATTGTGGAGTTCAATTACAAGGCGATAGAGGAC AAGCTCAAGAGACTGGCTCTCGAAGTGAGCCACCATGAGAACAACATTAGGTTCCTCAAA TCCCAACTCAATACTGTTGAAGAGGCGTGCGTCGACCTGGGAATTAAACTTGGGAATTAC CATTCATCCGTGGCCGCTGTTGTAAATAATGATACTTCTGCTCAAGAGGCTGAACAGCGC ACTATTCGAAGTATACTTGATCAGGGCAAGACAGCAGCTGGGATTATATGCCAACTGAAA GTCCGTCATCATGAGCTAGCATCTAAGATGCCACTGATGAAAGATATACTTGGTTTTGTG GCTACATTGGGAAAAGTAAATAATGATAACCTCAGCAGGCTTCTCACAGAGTACTTGGGA ATGGATAATATGCTTGCTCTTGTTTGCAAGACTTATGATGGTGTTAAGGGTCTTGAGAAA TACGACAAGGATGGCATCATTGATAACACCAGTGGCATTCATGGACTTGGTCGCTCTGTT GGAAAATTTCTGGATGGAAGATTTACTGTCTTTTGTCTTGAAAACTTGAGGCCATTTTCC GGTGATGTTATCATTGACGATCCACAAAGAAAGCTTATTTTACATAGACCAAGGTTGCCT GGAGGGGAGTCGCCTCCTGGTTTTCTGGATTTTGCAGTAAATATGATCCACCTGGACCGA GCACACTTGAGGTTCCTCACAGCCAGTGGCCATGGTCTTAGGGAAACTTTGTTTTATACT TTGTTTTCCCATTTACAAGTTTATAAGACTAGAACTGACATTCAAAGTGCCCTTCCTCTG ATAAAAGATGGTGCTGTTTCTCTAGATGGTGGTCTACTGAGACCCAATGGCTCATTCTGC CTTGGCCATAGCAAGAATCTTGAAGTGAAATTTCCTGTAACCACTGATGTTTCAAGTTTA CCTGAAAATGTCGCTGAAATGGAGGAACAAGTTAAACGTAAGAATTGGGAGAAGGAAATG GTTCTTGAAGATATGAAAAGGGAGGAAGATCTGCTGAAACAAGTTAAGGAATTATACAGG AAGCAGAAGCAAGAGCTCATGGATTATGTCACTCAACCAGCAGTGACACAGCCAAGTTCT ACGAGGTCAAAGGCCATGACACAACCGATCCTCACCTGCACACCACCTTTCTTGACACCA CGCAAGAATTGTGTCGCCACCACCAACATGCCTTCACCTTCCTCGCGTGGCCCAATGCCA AGACCTCCGGTCGTCTCTTCAAATGCCAACGCAGCGCCCTTCCTTCAGCTCCATACCCAC AACCACCACCACCAGCAGCAGCTGAGGATGGGCGACGCGGCCATCGCCGCCGTGCATTTG CATGAGTCTGAGGAGGAGCACATCTTCCGGAGCCGGTTCCCGCCCGTGGCCGTACCAGAC GACGTCACCGTGCCGGAGTTCGTGCTGGCGGACGCCGAGGCCTACGCGGACAAGACGGCG CTCGTGGAGGCCGCGCCGGGTGGCCGGTCCTACACCTACGGCGAGCTGGTCCGGGACGTG GCGCGGTTCGCCAGGGCGCTGCGGTCCATCGGCGTCCGCAGGGGCCACGTCGTGGTGGTC GCGCTCCCGAACCTGGCGGTGTACCCCGTGGTGAGCCTCGGGATCATGTCCGCCGGAGCG GTCTTCTCCGGCGTGAACCCGCGCGCCGTCGCCGCCGAGATCAAGAAGCAGGTGGAGGAC TCCGAGGCCAGGCTCGTGGTCGCCGACGCGGTGGCCTACGACAAGGTGAAGGACGCTGGC GTGCCGGTGATCGGCATCGGGGACGTGGCGCGGCTTCCCGGCGCCATAGGCTGGGACGAG CTCCTCGCCATGGCGGACCGCGCGGGCGCGCCGGTGGTGGCGCTTGAGCCGGCGCAGCAG TCCGACCTGTGCGCGCTCCCCTACTCGTCTGGTACGACGGGGGTGTCCAAGGGCGTGATG CTGAGCCACCGGAACCTGGTGTCCAGCCTCTGCTCCTCCATGTTCGCCGTCGGGCAGGAG CTGGTCGGGCAGGTGGTCACCCTGGGCCTGATGCCCTTCTTCCACATCTACGGCATCACC GGCATCTGCTGCGCCACGCTGCGGCACAAGGGCACGGTGGTGGTGATGGACCGCTTCGAC CTGCGCGCGTTCCTGGGCGCGCTGCTGACGCACCGCGTCATGTTCGCGCCCGTCGTGCCG CCGGTCATGCTGGCCATGGTGAAGAGCCCCGTGGCCGACGAGTTCGACCTGTCCGGCCTG GCCCTCAGGTCCGTCATGACGGCCGCCGCGCCGCTCGCGCCGGACCTCCTGGCGGCGTTC GAGCGCAAGTTCCCGGGCGTGCAGGTGGAGGAGGCGTACGGGCTCACGGAGCACAGCTGC ATCACGCTGACGCACGCCAGCGGCGGCGGCGAGGACGTGGGGTCGGCGGTGCAGGTCGCC AAGAAGAAGTCGGTCGGCTTCATCCTGCCCAACCTGGAGGTGAAGTTCGTGGACCCCGAC ACGGGGCGGTCGCTGCCCAAGAACACGCCGGGGGAGATCTGCGTGCGGAGCCAGGCCGTG ATGCAGGGCTACTACAGGAAGAAGGAGGAGACGGAGCGCACCATCGACGCCGCGGGGTGG CTCCACACGGGCGACGTCGGGTACATCGACGACGACGGCGACGTGTTCATCGTGGACCGC ATCAAGGAGCTCATCAAGTACAAGGGCTTCCAAGTCGCCCCTGCCGAGCTGGAGGCCATC CTGCTGTCTCACCCGTCCGTCGAGGACGCCGCCGTCTTCGGGCTGCCGGACGAGGAGGCC GGCGAGGTCCCGGCGTCGTGCGTGGTGCGGCGACGTGGCGCGCCGGAGAGCGAGGCGGAC ATGATGGCGTACGTGGCGGGGCGCGTTGCGTCGTACAAGAAGCTCCGGCTGCTGCGCTTC GTGGACGCCATCCCCAAGTCGGTGTCCGGCAAGATCCTGCGGAGGCAGCTCAGGGACGAG TTCGTCAAGAAGACGGCAGCAGCGTAA

Peptide Sequence

PEP ID	Zm00001d039274_P003
PEP Infomation	pep chromosome:B73_RefGen_v4:3:903701:918970:1 gene:Zm00001d039274 transcript:Zm00001d039274_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:4-coumarate--CoA ligase-like 1
Sequence	MATPSLPTQIVEFNYKAIEDKLKRLALEVSHHENNIRFLKSQLNTVEEACVDLGIKLGNY HSSVAAVVNNDTSAQEAEQRTIRSILDQGKTAAGIICQLKVRHHELASKMPLMKDILGFV ATLGKVNNDNLSRLLTEYLGMDNMLALVCKTYDGVKGLEKYDKDGIIDNTSGIHGLGRSV GKFLDGRFTVFCLENLRPFSGDVIIDDPQRKLILHRPRLPGGESPPGFLDFAVNMIHLDR AHLRFLTASGHGLRETLFYTLFSHLQVYKTRTDIQSALPLIKDGAVSLDGGLLRPNGSFC LGHSKNLEVKFPVTTDVSSLPENVAEMEEQVKRKNWEKEMVLEDMKREEDLLKQVKELYR KQKQELMDYVTQPAVTQPSSTRSKAMTQPILTCTPPFLTPRKNCVATTNMPSPSSRGPMP RPPVVSSNANAAPFLQLHTHNHHHQQQLRMGDAAIAAVHLHESEEEHIFRSRFPPVAVPD DVTVPEFVLADAEAYADKTALVEAAPGGRSYTYGELVRDVARFARALRSIGVRRGHVVVV ALPNLAVYPVVSLGIMSAGAVFSGVNPRAVAAEIKKQVEDSEARLVVADAVAYDKVKDAG VPVIGIGDVARLPGAIGWDELLAMADRAGAPVVALEPAQQSDLCALPYSSGTTGVSKGVM LSHRNLVSSLCSSMFAVGQELVGQVVTLGLMPFFHIYGITGICCATLRHKGTVVVMDRFD LRAFLGALLTHRVMFAPVVPPVMLAMVKSPVADEFDLSGLALRSVMTAAAPLAPDLLAAF ERKFPGVQVEEAYGLTEHSCITLTHASGGGEDVGSAVQVAKKKSVGFILPNLEVKFVDPD TGRSLPKNTPGEICVRSQAVMQGYYRKKEETERTIDAAGWLHTGDVGYIDDDGDVFIVDR IKELIKYKGFQVAPAELEAILLSHPSVEDAAVFGLPDEEAGEVPASCVVRRRGAPESEAD MMAYVAGRVASYKKLRLLRFVDAIPKSVSGKILRRQLRDEFVKKTAAA

Transcript Sequence

Transcript ID	Zm00001d039274_T003
Transcript Infomation	cdna chromosome:B73_RefGen_v4:3:903701:918970:1 gene:Zm00001d039274 gene_biotype:protein_coding transcript_biotype:protein_coding description:4-coumarate--CoA ligase-like 1
Sequence	TCGCTACCTTATTTCTCTTCCACCGTTTCTACCATCCCTGTGTTTCGCTGTGCTGTGTTC CATGGTCTCGATTCCTCTCCCTCGACACTGTCTCGGCGCTGCCAGTTTGACTCCTGCTTC TTCTTTACGCGGCGCAGATTAGTGGTCACATAGTTCGTCTTCCTGCGACGGCTCAATTCG CGGAGGCGCGGCATGGCGACTCCGTCGCTGCCGACGCAGATTGTGGAGTTCAATTACAAG GCGATAGAGGACAAGCTCAAGAGACTGGCTCTCGAAGTGAGCCACCATGAGAACAACATT AGGTTCCTCAAATCCCAACTCAATACTGTTGAAGAGGCGTGCGTCGACCTGGGAATTAAA CTTGGGAATTACCATTCATCCGTGGCCGCTGTTGTAAATAATGATACTTCTGCTCAAGAG GCTGAACAGCGCACTATTCGAAGTATACTTGATCAGGGCAAGACAGCAGCTGGGATTATA TGCCAACTGAAAGTCCGTCATCATGAGCTAGCATCTAAGATGCCACTGATGAAAGATATA CTTGGTTTTGTGGCTACATTGGGAAAAGTAAATAATGATAACCTCAGCAGGCTTCTCACA GAGTACTTGGGAATGGATAATATGCTTGCTCTTGTTTGCAAGACTTATGATGGTGTTAAG GGTCTTGAGAAATACGACAAGGATGGCATCATTGATAACACCAGTGGCATTCATGGACTT GGTCGCTCTGTTGGAAAATTTCTGGATGGAAGATTTACTGTCTTTTGTCTTGAAAACTTG AGGCCATTTTCCGGTGATGTTATCATTGACGATCCACAAAGAAAGCTTATTTTACATAGA CCAAGGTTGCCTGGAGGGGAGTCGCCTCCTGGTTTTCTGGATTTTGCAGTAAATATGATC CACCTGGACCGAGCACACTTGAGGTTCCTCACAGCCAGTGGCCATGGTCTTAGGGAAACT TTGTTTTATACTTTGTTTTCCCATTTACAAGTTTATAAGACTAGAACTGACATTCAAAGT GCCCTTCCTCTGATAAAAGATGGTGCTGTTTCTCTAGATGGTGGTCTACTGAGACCCAAT GGCTCATTCTGCCTTGGCCATAGCAAGAATCTTGAAGTGAAATTTCCTGTAACCACTGAT GTTTCAAGTTTACCTGAAAATGTCGCTGAAATGGAGGAACAAGTTAAACGTAAGAATTGG GAGAAGGAAATGGTTCTTGAAGATATGAAAAGGGAGGAAGATCTGCTGAAACAAGTTAAG GAATTATACAGGAAGCAGAAGCAAGAGCTCATGGATTATGTCACTCAACCAGCAGTGACA CAGCCAAGTTCTACGAGGTCAAAGGCCATGACACAACCGATCCTCACCTGCACACCACCT TTCTTGACACCACGCAAGAATTGTGTCGCCACCACCAACATGCCTTCACCTTCCTCGCGT GGCCCAATGCCAAGACCTCCGGTCGTCTCTTCAAATGCCAACGCAGCGCCCTTCCTTCAG CTCCATACCCACAACCACCACCACCAGCAGCAGCTGAGGATGGGCGACGCGGCCATCGCC GCCGTGCATTTGCATGAGTCTGAGGAGGAGCACATCTTCCGGAGCCGGTTCCCGCCCGTG GCCGTACCAGACGACGTCACCGTGCCGGAGTTCGTGCTGGCGGACGCCGAGGCCTACGCG GACAAGACGGCGCTCGTGGAGGCCGCGCCGGGTGGCCGGTCCTACACCTACGGCGAGCTG GTCCGGGACGTGGCGCGGTTCGCCAGGGCGCTGCGGTCCATCGGCGTCCGCAGGGGCCAC GTCGTGGTGGTCGCGCTCCCGAACCTGGCGGTGTACCCCGTGGTGAGCCTCGGGATCATG TCCGCCGGAGCGGTCTTCTCCGGCGTGAACCCGCGCGCCGTCGCCGCCGAGATCAAGAAG CAGGTGGAGGACTCCGAGGCCAGGCTCGTGGTCGCCGACGCGGTGGCCTACGACAAGGTG AAGGACGCTGGCGTGCCGGTGATCGGCATCGGGGACGTGGCGCGGCTTCCCGGCGCCATA GGCTGGGACGAGCTCCTCGCCATGGCGGACCGCGCGGGCGCGCCGGTGGTGGCGCTTGAG CCGGCGCAGCAGTCCGACCTGTGCGCGCTCCCCTACTCGTCTGGTACGACGGGGGTGTCC AAGGGCGTGATGCTGAGCCACCGGAACCTGGTGTCCAGCCTCTGCTCCTCCATGTTCGCC GTCGGGCAGGAGCTGGTCGGGCAGGTGGTCACCCTGGGCCTGATGCCCTTCTTCCACATC TACGGCATCACCGGCATCTGCTGCGCCACGCTGCGGCACAAGGGCACGGTGGTGGTGATG GACCGCTTCGACCTGCGCGCGTTCCTGGGCGCGCTGCTGACGCACCGCGTCATGTTCGCG CCCGTCGTGCCGCCGGTCATGCTGGCCATGGTGAAGAGCCCCGTGGCCGACGAGTTCGAC CTGTCCGGCCTGGCCCTCAGGTCCGTCATGACGGCCGCCGCGCCGCTCGCGCCGGACCTC CTGGCGGCGTTCGAGCGCAAGTTCCCGGGCGTGCAGGTGGAGGAGGCGTACGGGCTCACG GAGCACAGCTGCATCACGCTGACGCACGCCAGCGGCGGCGGCGAGGACGTGGGGTCGGCG GTGCAGGTCGCCAAGAAGAAGTCGGTCGGCTTCATCCTGCCCAACCTGGAGGTGAAGTTC GTGGACCCCGACACGGGGCGGTCGCTGCCCAAGAACACGCCGGGGGAGATCTGCGTGCGG AGCCAGGCCGTGATGCAGGGCTACTACAGGAAGAAGGAGGAGACGGAGCGCACCATCGAC GCCGCGGGGTGGCTCCACACGGGCGACGTCGGGTACATCGACGACGACGGCGACGTGTTC ATCGTGGACCGCATCAAGGAGCTCATCAAGTACAAGGGCTTCCAAGTCGCCCCTGCCGAG CTGGAGGCCATCCTGCTGTCTCACCCGTCCGTCGAGGACGCCGCCGTCTTCGGGCTGCCG GACGAGGAGGCCGGCGAGGTCCCGGCGTCGTGCGTGGTGCGGCGACGTGGCGCGCCGGAG AGCGAGGCGGACATGATGGCGTACGTGGCGGGGCGCGTTGCGTCGTACAAGAAGCTCCGG CTGCTGCGCTTCGTGGACGCCATCCCCAAGTCGGTGTCCGGCAAGATCCTGCGGAGGCAG CTCAGGGACGAGTTCGTCAAGAAGACGGCAGCAGCGTAATAATGCACATCATCCTGTGGG TGGGTGCTTGCTTATACCAGTGCAAGATCCTGCATTCGCCACTTGATGAAGACAATAATA CAATTAGGGTACAGTCAGATGTTCCAAGCTACTGATACAATTGTTGTTTCTGCAAACAGT ACTCCAAACTAGTGCATATACATTGGCGTTGTGGACCCAAAAAAAA