Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d039265_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:822132:826368:1 gene:Zm00001d039265 gene_biotype:protein_coding transcript_biotype:protein_coding description: beta amylase4
Sequence

ATGGCGGCGATTACCGCGCCGCCGGCCCCTCCCCCGGCCTCCACCTCATGCCGCCTCCTC
CGCCGCCGCGCGCCACTCACCCGCTTCGCCGCCTCCTCGTCCCCGTCCTCCCGCTTCCGC
CCGTCCTCCTCCTCCTTCCCTGCCGCAGCCGGCAGCAGCAGCGGCGGCGGGGGCGAGATC
CTCCACGTGTCGCCGCCTCCCCCGCCCGCCGCGCCCCCGGGGGTTCCCGTCTACGTCACG
CTCCCCGCCGACGCCGTCGACCCGGGGGGCCGCGTCGCGCGCCGCCGAGCCATGGGGGCC
TCGCTCGCCGCCCTGGCCGCCGCCGGTGTCGCGGGCGTCGCCGTAGAGCTCTGGTGGGGC
GTCGTAGAGCGCCGCAGCCCCGGGGAGTATGACTGGGCCGGCTACCTCGAGCTCGCCGCC
ATGGCCCGACGCCACGGCCTCCGCGTGCGCGCCATCCTCGCCTTCCACCAGTGCGGCGCC
GGCCCGCATGACCTGCCCTGGATTCCTTTGCCGCAATGGGTGCTTGAGGAGATGGATAAG
ATTCCGGACTTGTCATATACCAATAGATACCAGAAGAGAAACAAAGAATACATATCACTG
GGATGTGATATTCTTCCTGTTCTGAAAGGAAGATCACCTATGCAAGCTTACTCCGACTTC
ATGAGAAGCTTCCACAATACTTTTGAAGATTACCTTGGGGACACAATAACAGAAGTACAA
GTTGGAATGGGTCCAGGAGGTGAGCTTAGGTATCCGTCATACCCAACTGAGAAGCTAAAT
CAGCCAGGCAGTTCATCTGAACTTGGGGAATTTCAATGTTATGATAAGTTTATGCAAGCT
TCGTTGAGTGCTCGTGCACAGATTTTTGTGTTACAACAGTGGGGCAATGGCGGTTCAACT
GGCACAGATGGTTCACAGCAGAACCTTGAAGAAACGAGTTTTTTTCGCACCGATGGAGGC
TATTGGAATACACCTTATGGTCACTTTTTTCTTAAGTGGTATTCAGGAATGCTTCTCCTC
CATGGAGAGAGGTTATGCATGATAGCTGATGCAATCTTCTCTGGTACTGGTGTGACCATC
TCAGGGAAGGTTGCTGGAATACATTGGCACTATTATACTTGTTCACATCCATCTGAACTG
ACATCTGGCTACTACAATACTCTATTAAGAGATGGCTATCTTCCTATAGCTCAAATGTTT
GCCAAATACAAAGCTACATTGTGCTGCAGTTGTTTCGACCTGAGGGACGCAGAAAGAACA
AATTCTGAGAGCAGTCCCGAAGGTACTCTCCGGCAGCTTGCAGGTGCTGCTAAAATGTGC
AACCTTCCTCTTAATGGTGAGAATTCTGCGACAAGGCTGGATGATGCATCACTGAATCAA
GTGATAAGAAGCTCAAGGCTCTACTCAGGCCGTACTTCAGGAACATCTTTTTCCTTTAAC
TATGTTAGGATGAACAAAAGCTTGTTTGAGTTTCACAATTGGAATCGATTTACAAAGTTT
GTTAGGCAGATGTCAGATGCCAGGACCTTTCTAGCAAGACTGTATGTCAGGAGAGGGCAG
CAATACTTGTCTTCAATGTCAGTTGTTTGGGTGGTTAGTCGGGCTTGTGCATATACATGA

Peptide Sequence

PEP ID

Zm00001d039265_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:822132:826368:1 gene:Zm00001d039265 transcript:Zm00001d039265_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description: beta amylase4
Sequence

MAAITAPPAPPPASTSCRLLRRRAPLTRFAASSSPSSRFRPSSSSFPAAAGSSSGGGGEI
LHVSPPPPPAAPPGVPVYVTLPADAVDPGGRVARRRAMGASLAALAAAGVAGVAVELWWG
VVERRSPGEYDWAGYLELAAMARRHGLRVRAILAFHQCGAGPHDLPWIPLPQWVLEEMDK
IPDLSYTNRYQKRNKEYISLGCDILPVLKGRSPMQAYSDFMRSFHNTFEDYLGDTITEVQ
VGMGPGGELRYPSYPTEKLNQPGSSSELGEFQCYDKFMQASLSARAQIFVLQQWGNGGST
GTDGSQQNLEETSFFRTDGGYWNTPYGHFFLKWYSGMLLLHGERLCMIADAIFSGTGVTI
SGKVAGIHWHYYTCSHPSELTSGYYNTLLRDGYLPIAQMFAKYKATLCCSCFDLRDAERT
NSESSPEGTLRQLAGAAKMCNLPLNGENSATRLDDASLNQVIRSSRLYSGRTSGTSFSFN
YVRMNKSLFEFHNWNRFTKFVRQMSDARTFLARLYVRRGQQYLSSMSVVWVVSRACAYT

Transcript Sequence

Transcript ID

Zm00001d039265_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:822132:826368:1 gene:Zm00001d039265 gene_biotype:protein_coding transcript_biotype:protein_coding description: beta amylase4
Sequence

GACGCTGATCGTGTCGAGAGGGACAACCACACACACACACTGACACAATTCCCTCTGCCG
CACGCTCCGGCGGGAAGGCGCCTTCTCCCTCCCTCCTCTACTCTTCTGTCTTTCTCCAAT
GGCGGCGATTACCGCGCCGCCGGCCCCTCCCCCGGCCTCCACCTCATGCCGCCTCCTCCG
CCGCCGCGCGCCACTCACCCGCTTCGCCGCCTCCTCGTCCCCGTCCTCCCGCTTCCGCCC
GTCCTCCTCCTCCTTCCCTGCCGCAGCCGGCAGCAGCAGCGGCGGCGGGGGCGAGATCCT
CCACGTGTCGCCGCCTCCCCCGCCCGCCGCGCCCCCGGGGGTTCCCGTCTACGTCACGCT
CCCCGCCGACGCCGTCGACCCGGGGGGCCGCGTCGCGCGCCGCCGAGCCATGGGGGCCTC
GCTCGCCGCCCTGGCCGCCGCCGGTGTCGCGGGCGTCGCCGTAGAGCTCTGGTGGGGCGT
CGTAGAGCGCCGCAGCCCCGGGGAGTATGACTGGGCCGGCTACCTCGAGCTCGCCGCCAT
GGCCCGACGCCACGGCCTCCGCGTGCGCGCCATCCTCGCCTTCCACCAGTGCGGCGCCGG
CCCGCATGACCTGCCCTGGATTCCTTTGCCGCAATGGGTGCTTGAGGAGATGGATAAGAT
TCCGGACTTGTCATATACCAATAGATACCAGAAGAGAAACAAAGAATACATATCACTGGG
ATGTGATATTCTTCCTGTTCTGAAAGGAAGATCACCTATGCAAGCTTACTCCGACTTCAT
GAGAAGCTTCCACAATACTTTTGAAGATTACCTTGGGGACACAATAACAGAAGTACAAGT
TGGAATGGGTCCAGGAGGTGAGCTTAGGTATCCGTCATACCCAACTGAGAAGCTAAATCA
GCCAGGCAGTTCATCTGAACTTGGGGAATTTCAATGTTATGATAAGTTTATGCAAGCTTC
GTTGAGTGCTCGTGCACAGATTTTTGTGTTACAACAGTGGGGCAATGGCGGTTCAACTGG
CACAGATGGTTCACAGCAGAACCTTGAAGAAACGAGTTTTTTTCGCACCGATGGAGGCTA
TTGGAATACACCTTATGGTCACTTTTTTCTTAAGTGGTATTCAGGAATGCTTCTCCTCCA
TGGAGAGAGGTTATGCATGATAGCTGATGCAATCTTCTCTGGTACTGGTGTGACCATCTC
AGGGAAGGTTGCTGGAATACATTGGCACTATTATACTTGTTCACATCCATCTGAACTGAC
ATCTGGCTACTACAATACTCTATTAAGAGATGGCTATCTTCCTATAGCTCAAATGTTTGC
CAAATACAAAGCTACATTGTGCTGCAGTTGTTTCGACCTGAGGGACGCAGAAAGAACAAA
TTCTGAGAGCAGTCCCGAAGGTACTCTCCGGCAGCTTGCAGGTGCTGCTAAAATGTGCAA
CCTTCCTCTTAATGGTGAGAATTCTGCGACAAGGCTGGATGATGCATCACTGAATCAAGT
GATAAGAAGCTCAAGGCTCTACTCAGGCCGTACTTCAGGAACATCTTTTTCCTTTAACTA
TGTTAGGATGAACAAAAGCTTGTTTGAGTTTCACAATTGGAATCGATTTACAAAGTTTGT
TAGGCAGATGTCAGATGCCAGGACCTTTCTAGCAAGACTGTATGTCAGGAGAGGGCAGCA
ATACTTGTCTTCAATGTCAGTTGTTTGGGTGGTTAGTCGGGCTTGTGCATATACATGAAA
GTTGTCAAAAGCTATTGCGGATAATCTCAGCCATAAATGGTTCCACCACTGTGGATGGAA
AAGGTTTGCTCAGTATATGGCTCATTTTTAGTTGCCAGAAGGGCAGGCAGGCTTATATGC
TGAAGGCTGTACTGATTTCATGCATATGCATGTATTAGTTTCATGCATATGTCATCGCTG
AACAAAAGTTTATAGTTATTTGTTGTAAAGTGGCAGACTGGCAGTGTTTTGCTGCCAACA
ATATTGAATCGCACGAGGGTCCTGTTTAGCCATTTTAGAAATAATTAGATGGAGCTTCAT
GTTTTCCCGTTACAATATGAATGCTTTCAAACTATATCTGCCTATGAAAATATGTATACT
TCCTCT