Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d039147_T005
CDS Infomation	cds chromosome:B73_RefGen_v4:6:171042173:171048889:1 gene:Zm00001d039147 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phox-associated domain;Phox-like;Sorting nexin C-terminal
Sequence	ATGATCCTTTTAGCTGAAAACAAGTTGCATCCTGCTTTATTTTCAGCTGGCGCTGAATAC AAGGTATTGAAAAGTCTTGCTGACGGGTTGATCTCAATCACAGTGAAGCCTCAGGATCTA CAATGTACTTTCTTCCGGTGTACAGCGCGGGAACTTCTCGCTTGTGCAGTTTTGAGACCT GTTGTGAACTTAGCAAATCCAAGGTTTATAAATGAAAGAATCGAATCCTTTGCTCTTTCG CATGCCAATAAGTTGGAGAAAGGAACTGCAGAATCCTTGGATGTTGTCACAACTGTTAAG CACAGGGAACCACATATGCCCTCTGTTGATGAATTTTCGGCACTAATAGACCACTCAAGT TCAGGTGTTGAGCTCGTTCAATTTCGTCAGGGTCAATCGAAAACTGCATCAGATATACAA CCTGGAAAAAGTACAAATCCATATAGTCTAAAATTAGAATCCTCTCATGCACCTTTAGTC AGTAGTTCACACCCACTGGAGTCAACAAGTTTAGCTTCGTCTTCCCACGTTACTTCTGAT AATGGGTTTTCGTTGCATACCAAAAGCAGCAACAGAGCAACTGCAAATGGTCATGGTAGA GAGTGTGCACAGCCCTTGGGTATCAGTTCTGAGCGTGCACATCAAGCTTTAGCACTTGAG CACCTTGAGAATATGTGGACAAAGGGAAAGAACTACAAACCAGAAAATGTAGAACATGTC GCAAAAGTGTCTGTTGGATCTGCTTCTCTGGGCTCGACTTCAGTTCAGCAATCAGTTCCT TGCAGCACTTCAGTTTGTTACAATCAAAGTAATTCTGAAAGACCAACAGCGTCATCTCAG TCAAAGGACCAGCATTTGGTAAGACACTCAACTACACCTACATATGTAACATATCCAAAT GGCACCCCGAAAAGCCTATCTGCAGAAATGGCAGAACATGCCGGTCCAGAAGACTTTGCA GTAGAGAGTGAGAGTTCATATGCCACTGAGGACGATGAATTCAACAATGTGACTGGACTT GATTCTCCTGTTACCAGAGTTTGGGAAAGCAAAAGTAAAGGAAATGCTACCTTATCACAT ATACATCACCCACTCGAATCTCCTGGTTTCCATAGAGCAAAGAAGAACAGAAGTCATGTG GGAAAACTGAAGATGTCAAGAACTTCTTCAGGAAGAAAAAGGTCAAGGTCAAATGCTCAG AAGCCTCCTATCTGGCAAGAAGTGGAGAGATCCTCTTTCTCTGTTGGTGATAGTATGGAC ATACTAAATACATCTGCAAATGATCTAAAGACGCATGAGCTAGACGAGGATCCTGAGGTG GAAAGTATGGCTAGGATGTTTAGTAGTTCAAATACTTCATCTTTATTGTTGCCATCAAGT GACTCTGCATATTCTTCAAATTATTGTGGTGCCAATGTGCTACAAGACTCTTATTTGAAG TTAAGATGCGAGGTGGTAGGAGCTAGCATTGTCAAAAGCGGGTCTGGCATGTTTGCTGTG TATTCTATTTCCGTGACCGACGCCAATGGTAATAGTTGGTCCATTAAGAGGAGGTTTCGT CATTTTGAAGACCTGCATCGGCGTCTAAAAGAGTATGCTCAGTACAATCTTCATTTACCT CCAAAACATTTCCTCTCATCAGGTTTAGAGGTTTCTGTTGTTCGAGAGAGATGCAAGCTG CTCGACATATATCTGAAGAGAACCTTCTGCAAATTCCTATTGTTTCAAGCTGCATAG

Peptide Sequence

PEP ID	Zm00001d039147_P005
PEP Infomation	pep chromosome:B73_RefGen_v4:6:171042173:171048889:1 gene:Zm00001d039147 transcript:Zm00001d039147_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phox-associated domain;Phox-like;Sorting nexin C-terminal
Sequence	MILLAENKLHPALFSAGAEYKVLKSLADGLISITVKPQDLQCTFFRCTARELLACAVLRP VVNLANPRFINERIESFALSHANKLEKGTAESLDVVTTVKHREPHMPSVDEFSALIDHSS SGVELVQFRQGQSKTASDIQPGKSTNPYSLKLESSHAPLVSSSHPLESTSLASSSHVTSD NGFSLHTKSSNRATANGHGRECAQPLGISSERAHQALALEHLENMWTKGKNYKPENVEHV AKVSVGSASLGSTSVQQSVPCSTSVCYNQSNSERPTASSQSKDQHLVRHSTTPTYVTYPN GTPKSLSAEMAEHAGPEDFAVESESSYATEDDEFNNVTGLDSPVTRVWESKSKGNATLSH IHHPLESPGFHRAKKNRSHVGKLKMSRTSSGRKRSRSNAQKPPIWQEVERSSFSVGDSMD ILNTSANDLKTHELDEDPEVESMARMFSSSNTSSLLLPSSDSAYSSNYCGANVLQDSYLK LRCEVVGASIVKSGSGMFAVYSISVTDANGNSWSIKRRFRHFEDLHRRLKEYAQYNLHLP PKHFLSSGLEVSVVRERCKLLDIYLKRTFCKFLLFQAA

Transcript Sequence

Transcript ID	Zm00001d039147_T005
Transcript Infomation	cdna chromosome:B73_RefGen_v4:6:171042173:171048889:1 gene:Zm00001d039147 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phox-associated domain;Phox-like;Sorting nexin C-terminal
Sequence	CATCAGACTGAAACGGATGGAAAAATAGATTGGAGGAGCAAGGTTAACTCGCCTCCAGTT GAAGCAGCATTCGAACAGTTCACAAGGCACCTTATCTCAGAATGGGTAACAGATCTGTGG TACTCGCGCGTAACACCTGACAAGGAAGGTCCAGAGGAACTCATCGATGTAGTCAATACT GTCCTTGGGGAGATTTCAGTTCGGGCAAGAAATGTTAACCTTATCAATCTGCTGATCAGG GATTTGGTCGATCTTATATGCAATAATTTGGAACTTTATCATTTCTGTCAAGCCAAGATT GGAAGAGAGAAGTTTGTGGGCCTTCCTTCAGAGCGTCGTGATGCTGAACTGAAAATGATC CTTTTAGCTGAAAACAAGTTGCATCCTGCTTTATTTTCAGCTGGCGCTGAATACAAGGTA TTGAAAAGTCTTGCTGACGGGTTGATCTCAATCACAGTGAAGCCTCAGGATCTACAATGT ACTTTCTTCCGGTGTACAGCGCGGGAACTTCTCGCTTGTGCAGTTTTGAGACCTGTTGTG AACTTAGCAAATCCAAGGTTTATAAATGAAAGAATCGAATCCTTTGCTCTTTCGCATGCC AATAAGTTGGAGAAAGGAACTGCAGAATCCTTGGATGTTGTCACAACTGTTAAGCACAGG GAACCACATATGCCCTCTGTTGATGAATTTTCGGCACTAATAGACCACTCAAGTTCAGGT GTTGAGCTCGTTCAATTTCGTCAGGGTCAATCGAAAACTGCATCAGATATACAACCTGGA AAAAGTACAAATCCATATAGTCTAAAATTAGAATCCTCTCATGCACCTTTAGTCAGTAGT TCACACCCACTGGAGTCAACAAGTTTAGCTTCGTCTTCCCACGTTACTTCTGATAATGGG TTTTCGTTGCATACCAAAAGCAGCAACAGAGCAACTGCAAATGGTCATGGTAGAGAGTGT GCACAGCCCTTGGGTATCAGTTCTGAGCGTGCACATCAAGCTTTAGCACTTGAGCACCTT GAGAATATGTGGACAAAGGGAAAGAACTACAAACCAGAAAATGTAGAACATGTCGCAAAA GTGTCTGTTGGATCTGCTTCTCTGGGCTCGACTTCAGTTCAGCAATCAGTTCCTTGCAGC ACTTCAGTTTGTTACAATCAAAGTAATTCTGAAAGACCAACAGCGTCATCTCAGTCAAAG GACCAGCATTTGGTAAGACACTCAACTACACCTACATATGTAACATATCCAAATGGCACC CCGAAAAGCCTATCTGCAGAAATGGCAGAACATGCCGGTCCAGAAGACTTTGCAGTAGAG AGTGAGAGTTCATATGCCACTGAGGACGATGAATTCAACAATGTGACTGGACTTGATTCT CCTGTTACCAGAGTTTGGGAAAGCAAAAGTAAAGGAAATGCTACCTTATCACATATACAT CACCCACTCGAATCTCCTGGTTTCCATAGAGCAAAGAAGAACAGAAGTCATGTGGGAAAA CTGAAGATGTCAAGAACTTCTTCAGGAAGAAAAAGGTCAAGGTCAAATGCTCAGAAGCCT CCTATCTGGCAAGAAGTGGAGAGATCCTCTTTCTCTGTTGGTGATAGTATGGACATACTA AATACATCTGCAAATGATCTAAAGACGCATGAGCTAGACGAGGATCCTGAGGTGGAAAGT ATGGCTAGGATGTTTAGTAGTTCAAATACTTCATCTTTATTGTTGCCATCAAGTGACTCT GCATATTCTTCAAATTATTGTGGTGCCAATGTGCTACAAGACTCTTATTTGAAGTTAAGA TGCGAGGTGGTAGGAGCTAGCATTGTCAAAAGCGGGTCTGGCATGTTTGCTGTGTATTCT ATTTCCGTGACCGACGCCAATGGTAATAGTTGGTCCATTAAGAGGAGGTTTCGTCATTTT GAAGACCTGCATCGGCGTCTAAAAGAGTATGCTCAGTACAATCTTCATTTACCTCCAAAA CATTTCCTCTCATCAGGTTTAGAGGTTTCTGTTGTTCGAGAGAGATGCAAGCTGCTCGAC ATATATCTGAAGAGAACCTTCTGCAAATTCCTATTGTTTCAAGCTGCATAGAAGTCTGGG ATTTTCTGAGTGTGGATTCACAGACATATATTTTCACGGACACTCTCTCAGTCATCCAAA CATTGTCAGTCAGTTTAGATGAAAGATCAAATGGGAAAAATATAAAAGCATTGAACTCTT CTGGAGCTTTGAATGGAAATTCTATCTCTGGAGGTCAATCTTTGCATGGACATATAGACG ACACCGTACATAAGGATTCAGACATCGCTTGTGATGGTTTGAGATTTAGGAAAGGGAATG TGAACAAGAACTTGGGAAACGGTGTTAGCCACACAACAGATAGTGTTAGCAACACAACTG CCAATCATTATCAGGACAATTCTGGAAGTGATCCAGAGCAGAATGATCATTCCTTTTCAA TAGATTCATTAAATCCTAAGAAGTTGCGTTCAACTGAAACCAATGACACATCTCAAATTC CAGAGTCTGGAGGATTTTCAGTATCTCCTAATGATTGGATGGCCCCGAATCTTAGTGTTC CCTTGTTTCATCTTGTTGATGTGGTCTTTCAGCTCCAAGATGGAGGCTGGATAAGGCGTC AAGCATTTTGGGTAGCAAAGCAAATACTGCAATTGGGAATGGGAGACACGTTTGATGACT GGCTTGTTGACAAAATCCAATTACTTAGGAAAGGGAGGATAATTGCTTTTGCTGTTAAGC GCATTGAACAAATTCTCTGGCCTGATGGAATTTTCATGACAAAACATCCAAAGAGAAATT CGCCTCCACCTCCTCCTGGTGCTCAGAGCAATGGCATGGGAAACTATCTAAGCGATGAAC AACGGATAGAAGCTGCTCATCGTGCAAATTTTGTCCGTGAACTGATAATAGATAAAGCCC CATCTCCACTAGTGAGTCTTGTTGGTCGAAAGGATTATGAAAGATGTGCTCATGATATCT ATTTCTTTCTTCAGTCCCCGGTTTGTTTGAAGCAGCTAGCGTTCGAACTCCTTGAGCTGC TTGTTCTTTCTTCATTTCCGGAGTTGGATGGCACTGTGAGGAAGTGGCACGAAGATAAAG AGCAATTCTGCGCCCAGTAATGTTTATCAAACGTTTGAATTTGTCACGGGCGGTGTTTGT TTCCAACACATATCGTCTTTCCAGAGTGGTGTGGCCTGTGAATTCTGCGAAAATAAGGTG GTGGCTTCAGAGGAGTGCCCGTGGATATCTCAGTTTGAAGTGGGTGGTGGCTTTGTGCAG TGTGAATATGGTTAGATAGTGCGAGGATATGGTCCCTTTTTCCACCGGGCCATGGCAGAA CGGTTTTTGTGCCCGATAGAGTTCATTTTTCCCCCTCCAGATTTGGTATACGTAATGCTG CTGCCTGAAAGGAAAGAGATGGTGGCGCATTTTTTTTGCACCCGTTTTGGTGGTACACTG GTACCCGTCTTGTGTAAATCTGCATAGAGATAAATGAAGTTTCGAGGTGGTCAATGAATG ATAATAGCTCTCTGGCATCGTGATGAT