Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d039046_T012
CDS Infomation	cds chromosome:B73_RefGen_v4:6:169222047:169230415:1 gene:Zm00001d039046 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein ROOT INITIATION DEFECTIVE 3
Sequence	ATGGCGCCGCCACCACAACCAAAGCAGCTGGTGCTCGCTGCGTCATCCGCGGACGCGGGC GTGGCTGCCTGGGACCTCCGCACCGGCGCGGAGGACATCCGCCTCCGCCCCTGCGCCTCC CGCCCTCGGTCGCTCGCCTCGGTTGCCGACCGCTTCCTCGCCTCCGCTCAGGCTCTTCCC GCGGGCGGCAACTCCGGGACCATCCACTTCTACTACTGGGACAAGCCGCAAGTGGCCGTC AAGAGCTTTCCTGCTGAGCCGATCCGCGCACTCATCGCCGATCAGGAGGGAAGCTACCTC ATTGGCGGTGGCAGCAATGGCAACATTTTCCTTTGGGAGGTGTCTAGTGGAGAGCTTCTC CATACATGGCATGCACACTATCGTGCTGTTAGGTGCCTCGGGCTGTATGACTATTTGCTT GTCTCAGGGTCAGAGGATGGGACTATCAAAGTTTGGGATCTCATCACGGTGCTTGATGAG CAATCAAGGCTGGAGGTCCAGACACCATATTTGTATAGTTTCAGTCAGCATGCACTGCCT GTAACTGATATTGCTTGTTTTCTTGGAGCAATCGCTATATCTTCTTCTGAGGATCGAACC TGCAAAATTTGGAGTTTATCTGAGGGTAGGATGCTGAGAAGCATTTCATTTCCTACTAGC ATTGATTCTATAGCACTAGACCCAAGAAGTCATATTTTCTATGCTGGTGGTAGAGATGGA AAAATATATGTTACTGCTATGGGTGTTGATCTCAGTTTTCATGGTAGGGATGAGTCATCT ATTCTGGGTGCATTGGATGACCACAGGTTTGCCTGA

Peptide Sequence

PEP ID	Zm00001d039046_P012
PEP Infomation	pep chromosome:B73_RefGen_v4:6:169222047:169230415:1 gene:Zm00001d039046 transcript:Zm00001d039046_T012 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein ROOT INITIATION DEFECTIVE 3
Sequence	MAPPPQPKQLVLAASSADAGVAAWDLRTGAEDIRLRPCASRPRSLASVADRFLASAQALP AGGNSGTIHFYYWDKPQVAVKSFPAEPIRALIADQEGSYLIGGGSNGNIFLWEVSSGELL HTWHAHYRAVRCLGLYDYLLVSGSEDGTIKVWDLITVLDEQSRLEVQTPYLYSFSQHALP VTDIACFLGAIAISSSEDRTCKIWSLSEGRMLRSISFPTSIDSIALDPRSHIFYAGGRDG KIYVTAMGVDLSFHGRDESSILGALDDHRFA

Transcript Sequence

Transcript ID	Zm00001d039046_T012
Transcript Infomation	cdna chromosome:B73_RefGen_v4:6:169222047:169230415:1 gene:Zm00001d039046 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein ROOT INITIATION DEFECTIVE 3
Sequence	GACCCAGCCAAGCTCTGCCTTGTTTGGACGGCTCGGGTACGCGTCGGTGTCGCGGCCCCC CCGGAATAGTGAACCCTAAACCCCTCTCCGTTGCTCATGGCGCCGCCACCACAACCAAAG CAGCTGGTGCTCGCTGCGTCATCCGCGGACGCGGGCGTGGCTGCCTGGGACCTCCGCACC GGCGCGGAGGACATCCGCCTCCGCCCCTGCGCCTCCCGCCCTCGGTCGCTCGCCTCGGTT GCCGACCGCTTCCTCGCCTCCGCTCAGGCTCTTCCCGCGGGCGGCAACTCCGGGACCATC CACTTCTACTACTGGGACAAGCCGCAAGTGGCCGTCAAGAGCTTTCCTGCTGAGCCGATC CGCGCACTCATCGCCGATCAGGAGGGAAGCTACCTCATTGGCGGTGGCAGCAATGGCAAC ATTTTCCTTTGGGAGGTGTCTAGTGGAGAGCTTCTCCATACATGGCATGCACACTATCGT GCTGTTAGGTGCCTCGGGCTGTATGACTATTTGCTTGTCTCAGGGTCAGAGGATGGGACT ATCAAAGTTTGGGATCTCATCACGGTGCTTGATGAGCAATCAAGGCTGGAGGTCCAGACA CCATATTTGTATAGTTTCAGTCAGCATGCACTGCCTGTAACTGATATTGCTTGTTTTCTT GGAGCAATCGCTATATCTTCTTCTGAGGATCGAACCTGCAAAATTTGGAGTTTATCTGAG GGTAGGATGCTGAGAAGCATTTCATTTCCTACTAGCATTGATTCTATAGCACTAGACCCA AGAAGTCATATTTTCTATGCTGGTGGTAGAGATGGAAAAATATATGTTACTGCTATGGGT GTTGATCTCAGTTTTCATGGTAGGGATGAGTCATCTATTCTGGGTGCATTGGATGACCAC AGGTTTGCCTGACCTATCTTTTCGTCTTGTTCTTGAAAATTACTGCTGTGAATTATCTCG TATCATGAAATTCCATGAGAGGCCGTTTGGATCCCTTCATTTTGAATGAATTGAAATTTA CTTAATATAGCAGGCTATTTGGTTTGGAATTTCACTTTCCAAAGTTTAGATATAATCCTG TTCCAAATTCATAGGGCGAGGGGGGTGGAAATTGATTTTATGTATCACTAGTCCATGTTT CTCCTCTACAACTTATGACACACTCCTTGGCTCGCTCCTCTATAGTAGAAATGTAGCACA TAGATATCTTCCTTGTATGATCAACAATAGTATACAAATATATTTTATATAAAACTATAT TATCTTAATTGGTCTATGTCTAAATTACGATTATTAGAATGGAATCCAATTCCAAGGATC CAAACGGGGTCTGAGCAAGGTTTTAAAGTCGTCCGACTAATCGCGATTAGTCGGCCTTAT CGCTAGTCCGAGCTCGATTAGGGTCTCCGACTCGACTAGATAGCGATTAGTCGTCCGACT AGGGGTTATGGTCGACTAGTTATGCATGTTTTGGGCCACTAATCTGGCCTCTATACCAAC ACGGTACGCACTGTTGCGCGTGCGCTCTTCCCCAACCCAGCCACCCCTTCTCTAGCGTCG CCGCCCCTTACCCATTGTCGCCGCTCTCCTCTCCTGCCGCCCAGTTGCGCTTTGGTGGCC CTCTACTCGAGCAGCAGCTGCGCTCCCTCCATCTCGCGGCGGCAGTAGTCTGCAGAGCCC CCCTCCAGCGCGCTCCCGTCCTCCTCTGTTGTCTGTTCAGCGGCTGAACGGACGAGTAGG CGACCACTCCTCTGTTTAGAATTCAGAGATTGAGATGAGGACCTCTTCAGACGGTAATTG CCCTGATATTTTGGTTGTTCAGTGTTCTTTGTTCACTAACTAAGCAGTATTGTGCCCGCC TTGGCCTCCTCTTGAGTTGTGCTTCACTTGATTGTTGTGCCACTACATATGAGAATAGGA GGCGACGTAACAATGTTGAAGTCATCTTCCCAGAATCTGTGTTGCCCCAGCCCTAGAACG ATGGCAGTGGCACTAGTACAGTTCACGCAGTCCTGCAGTCCAGCTAGGCAGCTAGAGCTA TATATATTCATATATATTGACACACACACACACACACACACATATGGTCCTGTTATAGGT GAACGACTATAGGAGTCGACTAGACTCGACTAATCGAGCAAATCAACGACTAATCGCGAT TAGTCACCTTATCGGTGCTCAGGCGACTAGAGTCGACTAGCCGACTTTAAAACCTTGGGT CTGAGATAATTGTTCATCACTTAAAAGAACATGATCCACTATATTTGCCCATAGGAAGTG CATACATTATGAGCATGATTTTCAGCTTTGACAAGGCTCTATATCTTCAACCTTTACTTT AGACTTGAATAAATAAAAATTGAATTGCTAGGGCATCCATGTTGCATCTACTCTGATTGA TGGGCAGAGTGATATAGTAAGTTGCAAAATGGAATAAAGGAAATCATAGATCTTTATACC TAGTGATGTTACACTAAAATAATAATGATAATGCACCTTGGAATTTAGTCGGCAACTTGG AAATTCTTTTCTTTCTCAAGACATTACGAGTGTAGCCGGGGATCGAACATGCAACATGTA CATTATGCACAGCATTAGGGTAACTGCATTTGCAAGGATATTATTTGCATTGGTTCATGA AAGGAAAGGGGTGGTTCGAAATATACTTTTCACATATTTTCTTACTGGAAATTGAATATG ATTTACAGAATTATTATATCCTGACAATAATAACTAATGATGAAATTATATAATAAATAA ATATGAATACATTTCCTTACACTTAAGTGTTCCATAATCTCTACTATATTAAAGCAACAG TTTCATGTGTCGTGCGTCACGTGCGGAGCGTGTAGGTCTGTTTCTCTTCTCCGCTTCTCG CTTAACAATGGGCCGATACACCACAGATAGGCCTTGAGAAACCACTCAAGCCCAATACAA CAGGAAGCTACACACAGTGTAGCGCTCCCACATAGTGCCACCTTGCTAGTTAAAGGAGGA CGAGCGACGAACGACCTATAAAAAAAGAGTTAGGCTCCTTTTCAACGCATACCTTTCTCG GTATTTTGGCTAAAATAAGGTGTAATTATTGTTCTTATCAGTTTAATATCTGATATATGG ACCATATGTTCACTTTGATATTAAATTACGCACATGTATTGTACTACTGTACAAATATAT AACACTTTAAGGTCCTGTTTGCTGTTTGGCAGAGTTCCACCCCTTGATTCTCCTGCCCTT CTCCCTGATTCTTTGGAACGTGGAAGTTATTCTGTCTGATAGAATCGTTTGGCAAGCTGT GACTGTGTTCTTCAAAGAGCGGATTAAGCTGTAATTGTCCATAGTACCCTTGACTGCCTG AACAAAAGTCTGTAATACATATCATGAATAGACAAACTGACTATAGAAATTCTTTGTTTA ATATGCCAATAATTAATTGTTGACACCACAAGTTGCATCAAACAATCATCATATTCCAAA GTCCAAACCGATTGGGCCCAATTGAGTACAAAGTCCCCACAAGAGAACAAAATAATCAGA CATTTTCTTACAAAGGGTCCAGGCGTCTAGCTTGCCCCTGTCAATCTTCACAATTGTTTA ATAACTATGAAATCCATTGTTGTTCATCCTATGGCAAAAGTATTATATAACCACCAACAA ATAAATGAATACCTGATTAACAAGCTGACAGGACAATTCTAAATTAACTAGGGCTCATCT TATGCTTTGATCAACAGAACATTAAACAAAGTTGTGTTGCCAGGGCCTTCGGTCTGGATG AGGGACAACCAGAGGCAGCCTGGAGGTCGGTGGTTCTGACCTAGTGGAAGACAACGGTGG GCTCTGGTGTCAAGCCTGTGGAAGGTGGACACCAGAGCTTGATCTGCAGGGAGTGGGTGT GCCTGTACCTGTACTGGGGTATAGTAGGGTTGCCCCTTGGTATCGATTGACAACAACTCT ACTGAATCTTACTTTCTAGCCAGGAAAGATGTGTGTTTGGGGGGGGGTATGTTGATGTTC TGGGCGTGAGCTTCCCCGTTTGTACGGCTGGCGTCGGGCCAGTCCTGCTGGCAGTGCTGT GGTTTCCCGCACATGGAGGAAAAGATTGGACCCCTCCGTGCGGTGCTTTGGCGACAAACA AGTGCAGGATGGGCAATTGCGGCCCTTTTATACCTGTGGCAATTGTGGATCGATAACCTT TGACTTGGTGTGGAGGTCTATAATCAGAAGGGTGGGGAGCAGGCTTGAATTTGTGGGGGT GGTTTTTGGCCTCCGTGGTTGGTATAGAAAAATGAGGGATTGATTCACTAGATTCCCCTA AGGTGTGCCAAATTTTGGTGTTTGGCAGAACTGGAGTGATTCTCAATTTCTCATGAAGAA GCTGCACCAAGGAGTGCTTTCTCATGAAGAGGCTGCACCAAGGAGTGCTTTCTCATGAAG AGGCTGCACCAAGGAGTGCTGCCAAACGCACTGTAGTTAATTAAAATCTTAAGGAATTCC CATCCTCTTTTTTTTATTTGTTTCTCTGTTATTCGCTGCTTAGAAACTACAGATAGGCTG TATGGTAGTTTTTTTTGTAATGATTATTCATTGATCTGTATTGTTGTTATCAGTGCAGGT TATTCAATGTCATTATCTAAGTAAATTTGTTTGCAACTACTTTCTCTGTTTAATGTATGC TGCTTCAGTGTCAAATTCCTAACATTTGTGTGGTGAGATCTATTAAGTTGATTCTGGTAT TTTTTTACTGATCCAGCAAGGCAGTAACAAGCTTAGCATCAAGCAGAGATGGACTTCTAC TTGTCTCTGGATCTGAGGATGGTAATGTTCGGGTGTGGGATACCAGATGTCAGCAAGTTA CCCGAAAATTCAAACACTCCCAAGGTCCAGTAACCAATGTTCTTATTGTAACGCCACAAC GAGTAAATCTGCCACCGCTACAACCATTACGCAAAGTTCGGTCTGCAAATGGGGAGGCTG AACGGCAGGCAGTACTTCTTCATCGGCCTGAAAATGATGTCCCAATTCCTGGAAATAAGA CCTTCATTTTTATGGAGCGCTACTTGGATGAGCTTCAGAAGCATGGTGGTTCATCCAGGT TATTTGATTTTGGGCCGAATGCTCAGAATGGCACTCCAAACCAACAGGGAACAGAATGGA GAGATAGATACTTGGAGTTGCAGGATCTCTTTGTACATGAGGTCCTCCATCAGATGCCAT CCTCGAGGAACCCATGATGCACATGCTTTGGATATCGATCATTTGTGGTGTCGAAACAGT GATGGTTGCCATTCGGGCTACAAACGATGTAGATGAGTTCTTTGGAGTAATTCAACTGAT GGTGCTTTCGGCTGCGAGGAACTTATCAGATTCTGAACTAAAACCACTAGAATCGGTGCC AGCAGTCACTTGGAACTGGTTCTCGTTTGTGTACTAGTCTAGAGAAACGCTAAAAATCAG GTTTCTCTTGATTCTAGTTCTAATTTTAAGGATACAGTGAGCTTGCTACATAAAGTTATT TTGATTTCATAGAGAAAATGTTTTGTTCTCAGGG