Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d039041_T009
CDS Infomation

cds chromosome:B73_RefGen_v4:6:169130624:169139916:1 gene:Zm00001d039041 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative DUF1296 domain containing family protein

Sequence

ATGCACTCCAGCTCTACTGATAACATGACCTCAAGGCCACCAGGGTCTGGTACTGCATCA
GGTACTTCCAGTCAGAGGCAAACAGTTGCAAGTCCTTCTGCAAACAAACATATGGTTGCT
GATGGACCAGCTGCATCATTGCAATCATCGTCTGGGTTTCAGCATGGTGGTTGGTCTGGG
ACACCTGGTCAGTTGTCGATGGCTGACATTGTGAAAATGGGCCGGCCTCAGGGAAAGACT
TCTATCAAACCTGTGGTCACAGCTGACAGAGGTTATGCTGGACAGTACCCATCTTTGCCA
AGCACAAACCAGAATCTGAAACAATCTGGAAGCATGGTTCCCCCAACAGAGCTTGACAAG
GGGTTACAACCTGCCCAAGATTCGGTTCAGGTTAAGGATCATGATCATTCTACTGCTGAC
AGCAAGCTCCCATATGGTACTGACTGGTCTCCACAAGATGGCCCGACATTTGCGAACCAA
TCTTCCCTTCCTGAGCCATCTGGTGATCCGTCCTTGTATGAGGCATCGTTTCAGTCATCT
ACATTGGTTACTGATGTAGTTAATTCACATGAAAATTCACACTTGGATGAAAACGACACC
TTTGCAATGGGACCAGCACCTGCCTCTGAGAGACACCTGGATCCTAGTGACGGTATTTCT
GAGTACAATGATGTAATATTGAACAACTCAAGTTCCTATCAGCCTCATAATTACTCTTAC
ACAGAACAACAAGAAGTTGAGGATTCCAGTGCTGATGTATCAGCAGCAGCAGCAAACTTC
CAGAGTTTAAGCCTACATAATGATGAGTTAGCTGCAAAAAAGTCTGCAGAAGATAACCCT
GCAGTGATAATTCCTGACCACTTGCAAGTTACAAATACAGAATGTGTCAAGTTGAGCTTT
GGCAGTTTTGGATCTGGTGCATTTTCTGGGTTACTCCCACAAAATACCACTGATAGCAAT
GTGGAATTCCCTGCTCGAGAGGAATCTGCACCAGTAGATCAAATAGATGCCAGGAATCAA
GATTACTATGAAAGTGGTGCTGTAACTTCACCAGCAGACGAAAATCTTGAGGCCATGCTT
GGAGCTAACATGGAGAATGTAGATGCGCCTTCTGTTTCACAGGCTAATGAGCTCAGGCAG
GACGTACTTGATCCTTCTGAACTTCAATATGACGTCCCATCAGTTCCAAGTCATGCTTAT
TCAAACACGGACACTTTACAGCCTAGCACAATTGAGGAGCCACAAGGAAACAACCAAGCA
CATACTCTTTCCCATTTGTCAAACTTAATGCAAGCAAATCCTTTGAGCACCAGCAGCCTA
TTGGGGTCAAATCAAAATCATGCAACTCTTCATGGCTTAGAGTTTGATTTACCGCCTTAT
CTGGGAGCAAAATATAACGCAGGCTCAACTACAAATCCTAGACCACCCATATCCATGCAG
CAGGAGGCACTGAAAGCAGGGGTTTTCTCCAACGCCCAGTCTACACAGAGTCTTCCAAGT
ACTAGCATTCAGACGGGGCTTCCTCTGCCACAGCAATTAGCACATCACCCTTACTCTCAG
CCAACTTTACCAATCACACATTTTCCAAATATGGTTGGGTATCCGTATTTGCCACAAAAC
TATGCTACTTACCTATCTTCAGGCACCTTCCAGCAAGCATACCCGAGTAGCGGACCATTC
CATCAGTCTGCTGCTGCTGCTTTGCTGGCATCTGGTATGAAGTACTCGACTCCAGAGTAT
AAGAACAACCTGTCTGCCACAGGCTTACAACAGCAACATCAGCCACAACCACAACCACTT
TCATCAGTCATCTCTGGTTATGGAGGCTTTGGAAGCTCAAGTAATATACAAGGAAATTTT
ACCCTTAGTCAGAGTACCGGCTCTGCATCAGCTCTTGGGTTTGATGAAGCATTGAGCAGA
CAGTACAAAAACACCAGTCAATACATGGCTCTCCAGCAGGGCGACAACTCTGGAATGTGG
GTTCATGGCTCTGGTTCAAGAGCGGCCTCGACGCTTCCGCCTAACCACTTCTATGGTTAC
CAGGGACAGAGTCAGCTGGGTGGCTTTGCTCGGGCGCAGCAGCCACAGCCTTCCCAATTT
GGAGGCCATGGGTACCCAACTGTCTACCAGTCTCAGGGACAGGAGCACCCCCAGAACCTT
GCTGAGGGCAGCCTGAACGGCTTCCAGGTCACACCGTCTCAGCCATCTCATCCGAGCTGG
CAGCATCAGCACACGTACTGA

Peptide Sequence

PEP ID

Zm00001d039041_P009
PEP Infomation

pep chromosome:B73_RefGen_v4:6:169130624:169139916:1 gene:Zm00001d039041 transcript:Zm00001d039041_T009 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative DUF1296 domain containing family protein

Sequence

MHSSSTDNMTSRPPGSGTASGTSSQRQTVASPSANKHMVADGPAASLQSSSGFQHGGWSG
TPGQLSMADIVKMGRPQGKTSIKPVVTADRGYAGQYPSLPSTNQNLKQSGSMVPPTELDK
GLQPAQDSVQVKDHDHSTADSKLPYGTDWSPQDGPTFANQSSLPEPSGDPSLYEASFQSS
TLVTDVVNSHENSHLDENDTFAMGPAPASERHLDPSDGISEYNDVILNNSSSYQPHNYSY
TEQQEVEDSSADVSAAAANFQSLSLHNDELAAKKSAEDNPAVIIPDHLQVTNTECVKLSF
GSFGSGAFSGLLPQNTTDSNVEFPAREESAPVDQIDARNQDYYESGAVTSPADENLEAML
GANMENVDAPSVSQANELRQDVLDPSELQYDVPSVPSHAYSNTDTLQPSTIEEPQGNNQA
HTLSHLSNLMQANPLSTSSLLGSNQNHATLHGLEFDLPPYLGAKYNAGSTTNPRPPISMQ
QEALKAGVFSNAQSTQSLPSTSIQTGLPLPQQLAHHPYSQPTLPITHFPNMVGYPYLPQN
YATYLSSGTFQQAYPSSGPFHQSAAAALLASGMKYSTPEYKNNLSATGLQQQHQPQPQPL
SSVISGYGGFGSSSNIQGNFTLSQSTGSASALGFDEALSRQYKNTSQYMALQQGDNSGMW
VHGSGSRAASTLPPNHFYGYQGQSQLGGFARAQQPQPSQFGGHGYPTVYQSQGQEHPQNL
AEGSLNGFQVTPSQPSHPSWQHQHTY

Transcript Sequence

Transcript ID

Zm00001d039041_T009
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:169130624:169139916:1 gene:Zm00001d039041 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative DUF1296 domain containing family protein

Sequence

CGTATACTCTTTTCAGATACTTTCCAAGAGGTAAAGAGCAAGCGCGACAAGAAGAAAGAG
ATTAAAGAGGTTCCTGAGACAAGATATCGATCAGCAAATAGTTCTACTAATCGAGGCCTT
AGAAGTGGTGTAGATCGTGGTGGACGGAACAATTCTATGCACTCCAGCTCTACTGATAAC
ATGACCTCAAGGCCACCAGGGTCTGGTACTGCATCAGGTACTTCCAGTCAGAGGCAAACA
GTTGCAAGTCCTTCTGCAAACAAACATATGGTTGCTGATGGACCAGCTGCATCATTGCAA
TCATCGTCTGGGTTTCAGCATGGTGGTTGGTCTGGGACACCTGGTCAGTTGTCGATGGCT
GACATTGTGAAAATGGGCCGGCCTCAGGGAAAGACTTCTATCAAACCTGTGGTCACAGCT
GACAGAGGTTATGCTGGACAGTACCCATCTTTGCCAAGCACAAACCAGAATCTGAAACAA
TCTGGAAGCATGGTTCCCCCAACAGAGCTTGACAAGGGGTTACAACCTGCCCAAGATTCG
GTTCAGGTTAAGGATCATGATCATTCTACTGCTGACAGCAAGCTCCCATATGGTACTGAC
TGGTCTCCACAAGATGGCCCGACATTTGCGAACCAATCTTCCCTTCCTGAGCCATCTGGT
GATCCGTCCTTGTATGAGGCATCGTTTCAGTCATCTACATTGGTTACTGATGTAGTTAAT
TCACATGAAAATTCACACTTGGATGAAAACGACACCTTTGCAATGGGACCAGCACCTGCC
TCTGAGAGACACCTGGATCCTAGTGACGGTATTTCTGAGTACAATGATGTAATATTGAAC
AACTCAAGTTCCTATCAGCCTCATAATTACTCTTACACAGAACAACAAGAAGTTGAGGAT
TCCAGTGCTGATGTATCAGCAGCAGCAGCAAACTTCCAGAGTTTAAGCCTACATAATGAT
GAGTTAGCTGCAAAAAAGTCTGCAGAAGATAACCCTGCAGTGATAATTCCTGACCACTTG
CAAGTTACAAATACAGAATGTGTCAAGTTGAGCTTTGGCAGTTTTGGATCTGGTGCATTT
TCTGGGTTACTCCCACAAAATACCACTGATAGCAATGTGGAATTCCCTGCTCGAGAGGAA
TCTGCACCAGTAGATCAAATAGATGCCAGGAATCAAGATTACTATGAAAGTGGTGCTGTA
ACTTCACCAGCAGACGAAAATCTTGAGGCCATGCTTGGAGCTAACATGGAGAATGTAGAT
GCGCCTTCTGTTTCACAGGCTAATGAGCTCAGGCAGGACGTACTTGATCCTTCTGAACTT
CAATATGACGTCCCATCAGTTCCAAGTCATGCTTATTCAAACACGGACACTTTACAGCCT
AGCACAATTGAGGAGCCACAAGGAAACAACCAAGCACATACTCTTTCCCATTTGTCAAAC
TTAATGCAAGCAAATCCTTTGAGCACCAGCAGCCTATTGGGGTCAAATCAAAATCATGCA
ACTCTTCATGGCTTAGAGTTTGATTTACCGCCTTATCTGGGAGCAAAATATAACGCAGGC
TCAACTACAAATCCTAGACCACCCATATCCATGCAGCAGGAGGCACTGAAAGCAGGGGTT
TTCTCCAACGCCCAGTCTACACAGAGTCTTCCAAGTACTAGCATTCAGACGGGGCTTCCT
CTGCCACAGCAATTAGCACATCACCCTTACTCTCAGCCAACTTTACCAATCACACATTTT
CCAAATATGGTTGGGTATCCGTATTTGCCACAAAACTATGCTACTTACCTATCTTCAGGC
ACCTTCCAGCAAGCATACCCGAGTAGCGGACCATTCCATCAGTCTGCTGCTGCTGCTTTG
CTGGCATCTGGTATGAAGTACTCGACTCCAGAGTATAAGAACAACCTGTCTGCCACAGGC
TTACAACAGCAACATCAGCCACAACCACAACCACTTTCATCAGTCATCTCTGGTTATGGA
GGCTTTGGAAGCTCAAGTAATATACAAGGAAATTTTACCCTTAGTCAGAGTACCGGCTCT
GCATCAGCTCTTGGGTTTGATGAAGCATTGAGCAGACAGTACAAAAACACCAGTCAATAC
ATGGCTCTCCAGCAGGGCGACAACTCTGGAATGTGGGTTCATGGCTCTGGTTCAAGAGCG
GCCTCGACGCTTCCGCCTAACCACTTCTATGGTTACCAGGGACAGAGTCAGCTGGGTGGC
TTTGCTCGGGCGCAGCAGCCACAGCCTTCCCAATTTGGAGGCCATGGGTACCCAACTGTC
TACCAGTCTCAGGGACAGGAGCACCCCCAGAACCTTGCTGAGGGCAGCCTGAACGGCTTC
CAGGTCACACCGTCTCAGCCATCTCATCCGAGCTGGCAGCATCAGCACACGTACTGAGCC
CTCCTGTACTCCCTGGTTAGGGTGGCTCTTGTGCTGTCACAAGCCAAGTTTCGCGTGCTT
GTGCCCTCACTCGATGCAGAGTATGCTGCTCGGATTCAGTGAGCGCTGAGAGGGTCCCAG
GCATACAACAGTTAGAGCGTTTTAACATGTTGCGTGTGTTGCCAGACTGATGCATTGCGG
TTTGTTTTCGATAGTGAGTTATATGTGCGGAGGCGCAGTCCTGTATAACTGAGACATGAT
AACCTAACAAGCAGTCGTTTCTGTTTC