Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d038988_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:6:168296752:168299755:1 gene:Zm00001d038988 gene_biotype:protein_coding transcript_biotype:protein_coding description:hydroxyproline-rich glycoprotein family protein
Sequence

ATGTGTACACCATGCCATTTACTGGATGCGCCCCTGATCTCGAGCAACCGTGTGTGTATA
CAGTCAGAAATGTCTTCAGTCGGGAGCGGCAGTGGCACCAGGGCTGCGAATGGTGCAGCT
GCCATCAGTGCTGCCGCGACGGCAGCAGGCTCGGCCGACGCCAGATTCCACCCCCAACTA
CTACAGCAGCAGGACAGGCAAAGTAGATGGGCTGGCTGCTTTTCAGGCTTATCATGTTTC
GGATCGCAGAAGGGCGGGAAAAGAATTGTTCCTGCAGCACGTACTTCTGATGGGAATGGA
TCAAATGCTCGCGGAAATGGTCTCCAGTCTGGTGCCAATTCAAACCAAAATATGCCTATG
AATTTATCTCTTCTGGCTCCACCATCATCACCGGCATCCTTCTCAAACTCTGCACTTCCT
TCGACTGCTCAATCGCCAAATTGCTTTCTGTCTGTATCCGCAAACTCTCCTGGTGGCCCA
ACGTCTAATATGTTCGCCGTTGGGCCATATGCTAATGAACCTCAACTTGTCTCACCACCT
GTCTTCTCAACTTACACAACTGAGCCATCCACAGCACCGTTGACCCCACCACCTGAACTA
GCCCATGCAACTACACCTTCTTCTCCAGATGTTCCATATGCTAGATTTCTTTCTTCTTCT
ATGGATATCAAAACTGCTAGCAAGGAGCATAACATGCCTTTCTTATCAACAACCTATTCT
GGTGGTTCAGGACTCCAAGCATCCTACCCACTTTACCCTGAAAGCCCTTGTAGCAGCCTC
ATCTCACCGGCTTCAGTAACTCCGAGGACTGGTCTATCCTCACCTATACCTGAGCAAGAG
GTTCCTCCTGCCCATTGGAAGACCTCTAGGTCCGCGTGCGACACACCATATTTCAGGGCT
TCGCCCATTCCTGAGCAAGAAACCACTGCACAATGGAAGACCTCTAGATCTGCTTGTGAC
ACACCGTATGCCAGGACCTCACCAACCAATATTTTTGGTCTGGATTCAAATACCCCGAGA
AACTATATGCTAGATAGCAATTTCTTTCGGCCAGCGGCATCTGCTCAGTTCTACCTGGAC
CAGGCTCAGCAGGCATTTCCACATAATGGCGGGAGGGTTAGCGTATCCAGGGAGAAGCAA
GATGCCGATGAAATCGAAGCTTACCGAGCTTCATTTGGGTTTAGTGCCGATGAAATTGTC
CAATCTCAATCTTATGTTGGGATACCAGATGCGGTTGACGAGTCATTCAGTATATCACCA
TTTGGAAACAATGCTCCTGCTACTGAGATCTGCCCATTCAGTGATCTGCCTAGTGAGGTT
CAGAAGGCGGATAAATCATGCACCTACGTTAAAGATGGCACGAGCCCAAAGAAATCAGCA
AACCAACTCTCGATTGATTCTCCAAATAAAGTTCTGCGCTTGGACGTGTTCAAAGTAACA
AAAGGGGGTCATCTGTCTGAGGACGAGGGTATTGCGAGAGATGGTCATCCTTTCAGAAGG
ACAACGGATGAAATATCTCTAAAACCGATAGAGGTAAGGAAGAAATCTCCTCCTGGCCAT
TCTTGCTCAGACGCAGAGATTGAGTACAGAAGGACAAGGAGTCTGAGGGATGCCAACGGT
GTTTTATCGCGGCGTAGCGCATTGGCAAGACAACTGCACTAA

Peptide Sequence

PEP ID

Zm00001d038988_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:6:168296752:168299755:1 gene:Zm00001d038988 transcript:Zm00001d038988_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:hydroxyproline-rich glycoprotein family protein
Sequence

MCTPCHLLDAPLISSNRVCIQSEMSSVGSGSGTRAANGAAAISAAATAAGSADARFHPQL
LQQQDRQSRWAGCFSGLSCFGSQKGGKRIVPAARTSDGNGSNARGNGLQSGANSNQNMPM
NLSLLAPPSSPASFSNSALPSTAQSPNCFLSVSANSPGGPTSNMFAVGPYANEPQLVSPP
VFSTYTTEPSTAPLTPPPELAHATTPSSPDVPYARFLSSSMDIKTASKEHNMPFLSTTYS
GGSGLQASYPLYPESPCSSLISPASVTPRTGLSSPIPEQEVPPAHWKTSRSACDTPYFRA
SPIPEQETTAQWKTSRSACDTPYARTSPTNIFGLDSNTPRNYMLDSNFFRPAASAQFYLD
QAQQAFPHNGGRVSVSREKQDADEIEAYRASFGFSADEIVQSQSYVGIPDAVDESFSISP
FGNNAPATEICPFSDLPSEVQKADKSCTYVKDGTSPKKSANQLSIDSPNKVLRLDVFKVT
KGGHLSEDEGIARDGHPFRRTTDEISLKPIEVRKKSPPGHSCSDAEIEYRRTRSLRDANG
VLSRRSALARQLH

Transcript Sequence

Transcript ID

Zm00001d038988_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:168296752:168299755:1 gene:Zm00001d038988 gene_biotype:protein_coding transcript_biotype:protein_coding description:hydroxyproline-rich glycoprotein family protein
Sequence

ACTCACACTCTGTTTCTCTCTCTCTCGTGGAGACGACTGGGCGACCGCCGGCGCCGACCT
ACGCCAGGTGCCCAAGCCTTCGACGGGACCATCGCCGACGACGAGCACTCACGAGCTGGA
TCTGATCTAATTACAGGTGCACACATGCATTATACATACTAATTTCGGATTCTTTGCAAA
AAAAGTTGTCGGGTGTATATGTGTACACCATGCCATTTACTGGATGCGCCCCTGATCTCG
AGCAACCGTGTGTGTATACAGTCAGAAATGTCTTCAGTCGGGAGCGGCAGTGGCACCAGG
GCTGCGAATGGTGCAGCTGCCATCAGTGCTGCCGCGACGGCAGCAGGCTCGGCCGACGCC
AGATTCCACCCCCAACTACTACAGCAGCAGGACAGGCAAAGTAGATGGGCTGGCTGCTTT
TCAGGCTTATCATGTTTCGGATCGCAGAAGGGCGGGAAAAGAATTGTTCCTGCAGCACGT
ACTTCTGATGGGAATGGATCAAATGCTCGCGGAAATGGTCTCCAGTCTGGTGCCAATTCA
AACCAAAATATGCCTATGAATTTATCTCTTCTGGCTCCACCATCATCACCGGCATCCTTC
TCAAACTCTGCACTTCCTTCGACTGCTCAATCGCCAAATTGCTTTCTGTCTGTATCCGCA
AACTCTCCTGGTGGCCCAACGTCTAATATGTTCGCCGTTGGGCCATATGCTAATGAACCT
CAACTTGTCTCACCACCTGTCTTCTCAACTTACACAACTGAGCCATCCACAGCACCGTTG
ACCCCACCACCTGAACTAGCCCATGCAACTACACCTTCTTCTCCAGATGTTCCATATGCT
AGATTTCTTTCTTCTTCTATGGATATCAAAACTGCTAGCAAGGAGCATAACATGCCTTTC
TTATCAACAACCTATTCTGGTGGTTCAGGACTCCAAGCATCCTACCCACTTTACCCTGAA
AGCCCTTGTAGCAGCCTCATCTCACCGGCTTCAGTAACTCCGAGGACTGGTCTATCCTCA
CCTATACCTGAGCAAGAGGTTCCTCCTGCCCATTGGAAGACCTCTAGGTCCGCGTGCGAC
ACACCATATTTCAGGGCTTCGCCCATTCCTGAGCAAGAAACCACTGCACAATGGAAGACC
TCTAGATCTGCTTGTGACACACCGTATGCCAGGACCTCACCAACCAATATTTTTGGTCTG
GATTCAAATACCCCGAGAAACTATATGCTAGATAGCAATTTCTTTCGGCCAGCGGCATCT
GCTCAGTTCTACCTGGACCAGGCTCAGCAGGCATTTCCACATAATGGCGGGAGGGTTAGC
GTATCCAGGGAGAAGCAAGATGCCGATGAAATCGAAGCTTACCGAGCTTCATTTGGGTTT
AGTGCCGATGAAATTGTCCAATCTCAATCTTATGTTGGGATACCAGATGCGGTTGACGAG
TCATTCAGTATATCACCATTTGGAAACAATGCTCCTGCTACTGAGATCTGCCCATTCAGT
GATCTGCCTAGTGAGGTTCAGAAGGCGGATAAATCATGCACCTACGTTAAAGATGGCACG
AGCCCAAAGAAATCAGCAAACCAACTCTCGATTGATTCTCCAAATAAAGTTCTGCGCTTG
GACGTGTTCAAAGTAACAAAAGGGGGTCATCTGTCTGAGGACGAGGGTATTGCGAGAGAT
GGTCATCCTTTCAGAAGGACAACGGATGAAATATCTCTAAAACCGATAGAGGTAAGGAAG
AAATCTCCTCCTGGCCATTCTTGCTCAGACGCAGAGATTGAGTACAGAAGGACAAGGAGT
CTGAGGGATGCCAACGGTGTTTTATCGCGGCGTAGCGCATTGGCAAGACAACTGCACTAA
TAAGTCACTAGTATGCATGGCAATTTCATAGTTCATGTAGAGCAGTGTGTGCATTGAATT
TGAGCTGTCATTAGAGTGATCTGTAGGCGAAGAGTAGCCTTTATCGTATATGAGGATTAT
ATTATCAGATTGTGTGTTCTGGGTATGTGATGATGAGCTTTGTACTCTGTTTGAACTCCA
AGATCCTCTTTGTAGACACCTGCAGTCTTTCCCAGGAGCAGTGAAATGAAATATCGTTGG
CAAATTACAGGAACTGTGTTCTGGTCTTCCTGAATCCTGATGATGTAGGCTGCGTTTGAA
TTCTGCAGCATGTTGATT