Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d038980_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:6:168099647:168104795:-1 gene:Zm00001d038980 gene_biotype:protein_coding transcript_biotype:protein_coding description:Auxin-responsive protein IAA27
Sequence

ATGCCGCCGCCGCTCCTCCAGGCGCGCGACTACATGGGCGCCGGCGCCACCCCTCTGTCC
TGCTCCTCCAGCGGCGAGGGCACGGGGCCGCACCTCGCGCTGCGGCTCGGGCTCCCAGGG
TCCGACTCCCCCGGCCGCGACGCGGGGCCGGAGCCGGACCACGCCCACGTCGACGCCGCG
CTCACCCTCGGCCCTGCCCCCGCCCCCGCCCCCGCGCCTCCCAGGGTCGGCGCAAAGCGC
GGGTTCGCCGACTCCCGCGACCGGTGCGCGAAGCGGGACGCCACTGCTGCGGATGACGCT
GCTGGGGGAGTGACCGGGGAGGAGAAGCGGGTAGGTGCGGCCGCTGCCGGAGCTCCGCCG
GCTGCCAAGGCGCAAGTTGTTGGATGGCCGCCTGTTAGGAGCTACCGGAAGAACACACTA
GCTATGAGTGCCACAAAGACAAACGGGGAAGATGAAGGTAGGAGTGAGGCGGGATGCTGT
TATGTTAAGGTCAGCATGGATGGAGCCCCATACCTAAGGAAGGTGGACCTCAAGACCTTT
TCGAGCTATGAGGACCTTTCGCTTGCTCTGGAGAAAATGTTCACCTGCTTCATCACTGGT
CAAAGCGGTTCGTGCAAGACTTCAAGAAGGGAGAGGCTTACTGATGGTTCTAGGGCTGAT
GCCCTTCAGGACCAAGAATATGTCCTTACTTACGAAGATAAAGATGCTGACTGGATGCTC
GTTGGTGATCTCCCCTGGGACTTGTTCACCACAATTTGCGGGAAACTTAGAATCATGAGA
GGCTCTGATGCTGCTGGCATGGCTCCAAGATCACCGGAGCAGATAGTTGGGACCAGAATA
AGGAACGTTGCCCGGCATGCAGAGTCGTGA

Peptide Sequence

PEP ID

Zm00001d038980_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:6:168099647:168104795:-1 gene:Zm00001d038980 transcript:Zm00001d038980_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Auxin-responsive protein IAA27
Sequence

MPPPLLQARDYMGAGATPLSCSSSGEGTGPHLALRLGLPGSDSPGRDAGPEPDHAHVDAA
LTLGPAPAPAPAPPRVGAKRGFADSRDRCAKRDATAADDAAGGVTGEEKRVGAAAAGAPP
AAKAQVVGWPPVRSYRKNTLAMSATKTNGEDEGRSEAGCCYVKVSMDGAPYLRKVDLKTF
SSYEDLSLALEKMFTCFITGQSGSCKTSRRERLTDGSRADALQDQEYVLTYEDKDADWML
VGDLPWDLFTTICGKLRIMRGSDAAGMAPRSPEQIVGTRIRNVARHAES

Transcript Sequence

Transcript ID

Zm00001d038980_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:168099647:168104795:-1 gene:Zm00001d038980 gene_biotype:protein_coding transcript_biotype:protein_coding description:Auxin-responsive protein IAA27
Sequence

CTGCTTCCCCACCCAGTCACCTCGACCTCAGCCCCTCTCGCCCTCCCTAATCTCGACTCC
GATGCCGCCGCCGCTCCTCCAGGCGCGCGACTACATGGGCGCCGGCGCCACCCCTCTGTC
CTGCTCCTCCAGCGGCGAGGGCACGGGGCCGCACCTCGCGCTGCGGCTCGGGCTCCCAGG
GTCCGACTCCCCCGGCCGCGACGCGGGGCCGGAGCCGGACCACGCCCACGTCGACGCCGC
GCTCACCCTCGGCCCTGCCCCCGCCCCCGCCCCCGCGCCTCCCAGGGTCGGCGCAAAGCG
CGGGTTCGCCGACTCCCGCGACCGGTGCGCGAAGCGGGACGCCACTGCTGCGGATGACGC
TGCTGGGGGAGTGACCGGGGAGGAGAAGCGGGTAGGTGCGGCCGCTGCCGGAGCTCCGCC
GGCTGCCAAGGCGCAAGTTGTTGGATGGCCGCCTGTTAGGAGCTACCGGAAGAACACACT
AGCTATGAGTGCCACAAAGACAAACGGGGAAGATGAAGGTAGGAGTGAGGCGGGATGCTG
TTATGTTAAGGTCAGCATGGATGGAGCCCCATACCTAAGGAAGGTGGACCTCAAGACCTT
TTCGAGCTATGAGGACCTTTCGCTTGCTCTGGAGAAAATGTTCACCTGCTTCATCACTGG
TCAAAGCGGTTCGTGCAAGACTTCAAGAAGGGAGAGGCTTACTGATGGTTCTAGGGCTGA
TGCCCTTCAGGACCAAGAATATGTCCTTACTTACGAAGATAAAGATGCTGACTGGATGCT
CGTTGGTGATCTCCCCTGGGACTTGTTCACCACAATTTGCGGGAAACTTAGAATCATGAG
AGGCTCTGATGCTGCTGGCATGGCTCCAAGATCACCGGAGCAGATAGTTGGGACCAGAAT
AAGGAACGTTGCCCGGCATGCAGAGTCGTGAACTGAAAGGAAAGGACAGAGTTTACATGG
CGCTGAAGGGAGCGGTGTTTTTACGTGAAGTGCTCCGGTTAAGTCTCTCTCTCTCTCTTT
TTTTTTGTAACCCCCACATGTGCAATGAGATGTGTGTGGCCCTACTGTAAGACACCCCAT
TTTGCCCACGAGGTTGTCACGTGTTATTGTAGATGGTCGCCTTTGTGTTATGAACGATCA
AACTCGGCAGTAGCCTGCTTGCTGCTTCCTCTATGATACTTTCCTCCGTATTTGGAAGCT
CGTACTTCATATGGTAGAAGTAAGAAAAAAAAAGCCCATGTTGCCCATTAAGATTTTTTG
TTCTCCTGATGTGTGTGCGAGTGAACTAAACTATTCAGTGGATCTAGAAAGAATCTGATC
ACTGAGTCTGTTAGTCA