Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d038954_T007
CDS Infomation

cds chromosome:B73_RefGen_v4:6:167624903:167632065:1 gene:Zm00001d038954 gene_biotype:protein_coding transcript_biotype:protein_coding description:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Sequence

ATGCAACAGCACGAGGAGGAGCAGGAGCGGCCGCCGACCGTCCGCGCGGTCACCATCCCC
TTCGCCGACCTCAGGGTGCCGGACAGGGACCTTGGCGACAAGATCGAGGAAGGTCTGGGT
CCCCATGGGCTCGGCATCGTCACCATTGCCGATGTACCTGAGTTTCCAGAGCTAAGAAAA
AGGCTGCTGCGCTTGGCACCCAGGATTGCAAACCTTCCTGAAGAGGTGAAGAAACAGCTT
GAAGATCCAGATAGCAGATATAACTTTGGGTGGAGTCATGGGAAGGAGAAACTCGAGTCC
GGGAAACTTGACACATTTAAAGGTTCCTTTTATGCGAACCCTGTTTTGGATGTCCCTACT
ACTGATGATGTGCTTGTAAGTAGGTATCCATCATATTGCCGACCAAATATATGGCCAAAC
GATAATCTTCCTGAGCTTGAGATAGCATTTAAAGATCTTGGGAAGCTGATGATGGAAGTT
GGTTTGATGTTGGCTCATCATTGTGATCGCTATGTAATGAGGCAAGGAGTAGGGTCATAT
GATGGTGACAGTCTTGAGCAGACAATTGCTCGTTCAAGGTGTCACAAGGGTCGTCTGTTG
TACTATTTCCCACGACAGTTTAGCAAGCAGACAGACTTCGACTCGGTTTCATCATGGTGT
GGATGGCACACTGATCATGGATCTCTAACAGGGCTTACATGTGGCTTGTTTACGAAGAAT
TCTATGGAGGTACCATGTCCAGACAGTGCAGCTGGACTATACATTCGGACTCGTGATAAC
CAAGTTGTTAAGGTTGTGTTCGACGAGGATCAGCTAGCTTACCAAATCGGGGAAACTACT
GAAATACTGTCAAGAGGTTATCTATGTGCAACCCCACACTGTGTGCAGGCACCCAGCAGC
GAAAATGCTTCAAATGTTGACCGCTCTACTTTTGCCTTGTTCATGCAACCAGATTGGAAT
GAGAAGCTGAAGTTTCCAAGCGAAATCCCCTATCACCAAGAGTTGATTCCACCAAACGGA
ACGCTGACTTTCGGGGAGTACTCAGAAAGGCTGGTAGACAAGTATTACCAGACAACAACG
TAG

Peptide Sequence

PEP ID

Zm00001d038954_P007
PEP Infomation

pep chromosome:B73_RefGen_v4:6:167624903:167632065:1 gene:Zm00001d038954 transcript:Zm00001d038954_T007 gene_biotype:protein_coding transcript_biotype:protein_coding description:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Sequence

MQQHEEEQERPPTVRAVTIPFADLRVPDRDLGDKIEEGLGPHGLGIVTIADVPEFPELRK
RLLRLAPRIANLPEEVKKQLEDPDSRYNFGWSHGKEKLESGKLDTFKGSFYANPVLDVPT
TDDVLVSRYPSYCRPNIWPNDNLPELEIAFKDLGKLMMEVGLMLAHHCDRYVMRQGVGSY
DGDSLEQTIARSRCHKGRLLYYFPRQFSKQTDFDSVSSWCGWHTDHGSLTGLTCGLFTKN
SMEVPCPDSAAGLYIRTRDNQVVKVVFDEDQLAYQIGETTEILSRGYLCATPHCVQAPSS
ENASNVDRSTFALFMQPDWNEKLKFPSEIPYHQELIPPNGTLTFGEYSERLVDKYYQTTT

Transcript Sequence

Transcript ID

Zm00001d038954_T007
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:167624903:167632065:1 gene:Zm00001d038954 gene_biotype:protein_coding transcript_biotype:protein_coding description:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Sequence

AGGTCCAGCCGCCCGGCGCAGATCACGGGGCCAGGTCGTCTCCTTCGCCCTCGCTCCCGC
GTCGTCCCGCCGGGTCCGGCACCGTTGCCGCGCGATGCAACAGCACGAGGAGGAGCAGGA
GCGGCCGCCGACCGTCCGCGCGGTCACCATCCCCTTCGCCGACCTCAGGGTGCCGGACAG
GGACCTTGGCGACAAGATCGAGGAAGGTCTGGGTCCCCATGGGCTCGGCATCGTCACCAT
TGCCGATGTACCTGAGTTTCCAGAGCTAAGAAAAAGGCTGCTGCGCTTGGCACCCAGGAT
TGCAAACCTTCCTGAAGAGGTGAAGAAACAGCTTGAAGATCCAGATAGCAGATATAACTT
TGGGTGGAGTCATGGGAAGGAGAAACTCGAGTCCGGGAAACTTGACACATTTAAAGGTTC
CTTTTATGCGAACCCTGTTTTGGATGTCCCTACTACTGATGATGTGCTTGTAAGTAGGTA
TCCATCATATTGCCGACCAAATATATGGCCAAACGATAATCTTCCTGAGCTTGAGATAGC
ATTTAAAGATCTTGGGAAGCTGATGATGGAAGTTGGTTTGATGTTGGCTCATCATTGTGA
TCGCTATGTAATGAGGCAAGGAGTAGGGTCATATGATGGTGACAGTCTTGAGCAGACAAT
TGCTCGTTCAAGGTGTCACAAGGGTCGTCTGTTGTACTATTTCCCACGACAGTTTAGCAA
GCAGACAGACTTCGACTCGGTTTCATCATGGTGTGGATGGCACACTGATCATGGATCTCT
AACAGGGCTTACATGTGGCTTGTTTACGAAGAATTCTATGGAGGTACCATGTCCAGACAG
TGCAGCTGGACTATACATTCGGACTCGTGATAACCAAGTTGTTAAGGTTGTGTTCGACGA
GGATCAGCTAGCTTACCAAATCGGGGAAACTACTGAAATACTGTCAAGAGGTTATCTATG
TGCAACCCCACACTGTGTGCAGGCACCCAGCAGCGAAAATGCTTCAAATGTTGACCGCTC
TACTTTTGCCTTGTTCATGCAACCAGATTGGAATGAGAAGCTGAAGTTTCCAAGCGAAAT
CCCCTATCACCAAGAGTTGATTCCACCAAACGGAACGCTGACTTTCGGGGAGTACTCAGA
AAGGCTGGTAGACAAGTATTACCAGACAACAACGTAGAGCATACCTCAAGAAAAGCTACC
GTCCATACGTTCGTACCATCAAGTGTGTTCTTGTGTATTCATTTTTAGCTTTGATCATAA
CTCTGTACAAAATATAGTCGATCATCGAATCGAATACAGCGCACAGTAATGTATCACGCC
TATTGCTTTGGGTGAATTTACGTATACTACTACGACTAAGAAGCTAATGTTTAGATGCTA
ATCTAATATACATCCTG