Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d038928_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:6:167157024:167161458:-1 gene:Zm00001d038928 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGACAGCTTTGCATCACCTTCTCTGCCGCTCCCATTTCTCCCTCGAGGCAAGAAAAATA
AATCCTAGGGTTTCTGCCTCCAATCCGCGGCCGATGCCTGACGCCAATGAGCTGGAAGCC
GCCCGGCGCGTGGCGACCTTCACCTTGGCGGAGCTCTCTATCTCCTCTTCGACGTTGCCT
CCTCGCTCCAACCTCCCGGCGCTCTTTCGCCGCTGCCTCCAGTTGCTGCCTCTTCTCAAC
GCTGGCGATCCAAAACTAGCCGCTCGATGCTGCCGCGGCCTCCTCGCTTCCGTTGGCGCC
ATCCTCTCTCGGGACCTCTCGCCCTCCCTCCTCCCTGCAATCGAGGTCTTCACTGAGAGT
GTTGTTTCTAGTGACCATTTGAGGAGCTGCTTGATTATAGCCAACTGTGCTGCACGTGAA
GGATCAAGGATGTTCGCTGAGGCTGACCCATACGAGGATGAGCACATAATGCTTGAACTT
GTGTGCCGCCACTTCATTTCATCATTACTGGACGAGGGGGCATTTGAGGTGTTTCTGAGT
GCACTTTCTTGGTCGGGGAGGGCATTGCAGCGGACTCCAGAAATCAGCTTTCAGGGGGCT
TTTGTGCTGGTTCAAAGGACCTACCTCTCTTTGCCGGCTGTTGTACAAGCACATCTTTTA
CTGCTCATGTCAAGATGCACCAGTGGTCAAAATCTTAACTCGCATATGCTAGCGTTTAGA
TATGCCATGAATCTTTATGTCAGATATTTACCGGCATTGCGTGTTTTCAACATAACCCGC
AGTGCAATACCCCCACTGAATTATTTGGGCAAGAAAAGATCTTTTAGTTGTATCAAAGAT
AGCACTGATCAGAAACTCAGAAGTCAGATCTATCGTCTGCTTTCGTTTTGTGAATTGCAC
TGTGGTGATGATCTTCCTGTCAATGAGAGTGATATTGGTTGCATAATTGAAATGAACCAG
CATATGTTTCTTGAAAAGTTCAGGCAAGAATGTATTGTGTTTGTGAAGGGTATATTGTCT
AGTATCCTGTGCTGTGCAAAGCAAAAGGAGGTGAGTGAACCTGATACTGAGGTATCAGAT
GAGATTATTTGCCTTGCTGCAGCAACTAGGGTAATGGGCTCCTCAATTCTATACATCCTG
CACAATAAAAATTATGAAGCAAACTGCAAGGAATACAATGTTATATGTGAAATTATCAGT
TTGCTTGGGCAATATGGAACAGATGAGCTTCATAGATATGACCTCCTGGCTATTATTGGG
GAGTCAGTGGAAAGTGAAAGTGCCTCAATGCTAATGTTGGCTCATTTTGCTAGCTTATCA
ACTTGTTGTTTAAGAAGAAGGCTTGGCTTTCTGTGGAAAGGTTGTATTATCATGATGATG
ATCGCCACAAATCTTATTGCTGAAGAGCAAAGTTGGGGTACATTTCATCTCCCTATGGAT
GTCTCCAAATATTCTCCAGTTTTCTGCAATACCGAAAAGGGGATTGTAGAGGTTTCTGCT
CGAACTAAAGAGATAATATTACGGTATAAAAGCATACATAAATCTCATAATAAAGGCAGG
CGCTTTTATGATGATGGAATCAGTTTGAATTATGTTATCTCGTTGCAGTTTGGGCGCTCC
TGA

Peptide Sequence

PEP ID

Zm00001d038928_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:6:167157024:167161458:-1 gene:Zm00001d038928 transcript:Zm00001d038928_T004 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MTALHHLLCRSHFSLEARKINPRVSASNPRPMPDANELEAARRVATFTLAELSISSSTLP
PRSNLPALFRRCLQLLPLLNAGDPKLAARCCRGLLASVGAILSRDLSPSLLPAIEVFTES
VVSSDHLRSCLIIANCAAREGSRMFAEADPYEDEHIMLELVCRHFISSLLDEGAFEVFLS
ALSWSGRALQRTPEISFQGAFVLVQRTYLSLPAVVQAHLLLLMSRCTSGQNLNSHMLAFR
YAMNLYVRYLPALRVFNITRSAIPPLNYLGKKRSFSCIKDSTDQKLRSQIYRLLSFCELH
CGDDLPVNESDIGCIIEMNQHMFLEKFRQECIVFVKGILSSILCCAKQKEVSEPDTEVSD
EIICLAAATRVMGSSILYILHNKNYEANCKEYNVICEIISLLGQYGTDELHRYDLLAIIG
ESVESESASMLMLAHFASLSTCCLRRRLGFLWKGCIIMMMIATNLIAEEQSWGTFHLPMD
VSKYSPVFCNTEKGIVEVSARTKEIILRYKSIHKSHNKGRRFYDDGISLNYVISLQFGRS

Transcript Sequence

Transcript ID

Zm00001d038928_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:167157024:167161458:-1 gene:Zm00001d038928 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

GACGCCCCTCTTATCACAGGAGGGCGGCGGGGCTGCTGTCGGCTACTCGGCTCCACGAGA
CCACGACTGGAGTTCGGCGAATCGACAGTAGGTGGAGGCGGGGCTCACGGCCGACGGAGC
CTCTCACCAACGCCCAACGCCCAACGCCGGTTCCCTGGGTTGGGCTGGCCACTTGCTCCT
CGCCGGCTGGGGCTGAGGTGTGGCCGGCGGCAGCTAGGAACAGCGACCTGCGCCAGTCGA
AGCAACATTGCGTCAGGGAGCGGAAGACATGCGCGCCGTTGGTGAATGACAGCTTTGCAT
CACCTTCTCTGCCGCTCCCATTTCTCCCTCGAGGCAAGAAAAATAAATCCTAGGGTTTCT
GCCTCCAATCCGCGGCCGATGCCTGACGCCAATGAGCTGGAAGCCGCCCGGCGCGTGGCG
ACCTTCACCTTGGCGGAGCTCTCTATCTCCTCTTCGACGTTGCCTCCTCGCTCCAACCTC
CCGGCGCTCTTTCGCCGCTGCCTCCAGTTGCTGCCTCTTCTCAACGCTGGCGATCCAAAA
CTAGCCGCTCGATGCTGCCGCGGCCTCCTCGCTTCCGTTGGCGCCATCCTCTCTCGGGAC
CTCTCGCCCTCCCTCCTCCCTGCAATCGAGGTCTTCACTGAGAGTGTTGTTTCTAGTGAC
CATTTGAGGAGCTGCTTGATTATAGCCAACTGTGCTGCACGTGAAGGATCAAGGATGTTC
GCTGAGGCTGACCCATACGAGGATGAGCACATAATGCTTGAACTTGTGTGCCGCCACTTC
ATTTCATCATTACTGGACGAGGGGGCATTTGAGGTGTTTCTGAGTGCACTTTCTTGGTCG
GGGAGGGCATTGCAGCGGACTCCAGAAATCAGCTTTCAGGGGGCTTTTGTGCTGGTTCAA
AGGACCTACCTCTCTTTGCCGGCTGTTGTACAAGCACATCTTTTACTGCTCATGTCAAGA
TGCACCAGTGGTCAAAATCTTAACTCGCATATGCTAGCGTTTAGATATGCCATGAATCTT
TATGTCAGATATTTACCGGCATTGCGTGTTTTCAACATAACCCGCAGTGCAATACCCCCA
CTGAATTATTTGGGCAAGAAAAGATCTTTTAGTTGTATCAAAGATAGCACTGATCAGAAA
CTCAGAAGTCAGATCTATCGTCTGCTTTCGTTTTGTGAATTGCACTGTGGTGATGATCTT
CCTGTCAATGAGAGTGATATTGGTTGCATAATTGAAATGAACCAGCATATGTTTCTTGAA
AAGTTCAGGCAAGAATGTATTGTGTTTGTGAAGGGTATATTGTCTAGTATCCTGTGCTGT
GCAAAGCAAAAGGAGGTGAGTGAACCTGATACTGAGGTATCAGATGAGATTATTTGCCTT
GCTGCAGCAACTAGGGTAATGGGCTCCTCAATTCTATACATCCTGCACAATAAAAATTAT
GAAGCAAACTGCAAGGAATACAATGTTATATGTGAAATTATCAGTTTGCTTGGGCAATAT
GGAACAGATGAGCTTCATAGATATGACCTCCTGGCTATTATTGGGGAGTCAGTGGAAAGT
GAAAGTGCCTCAATGCTAATGTTGGCTCATTTTGCTAGCTTATCAACTTGTTGTTTAAGA
AGAAGGCTTGGCTTTCTGTGGAAAGGTTGTATTATCATGATGATGATCGCCACAAATCTT
ATTGCTGAAGAGCAAAGTTGGGGTACATTTCATCTCCCTATGGATGTCTCCAAATATTCT
CCAGTTTTCTGCAATACCGAAAAGGGGATTGTAGAGGTTTCTGCTCGAACTAAAGAGATA
ATATTACGGTATAAAAGCATACATAAATCTCATAATAAAGGCAGGCGCTTTTATGATGAT
GGAATCAGTTTGAATTATGTTATCTCGTTGCAGTTTGGGCGCTCCTGAGGAATGCAATTC
CAGAGTTGGAAAGCCTGCCGGTCAAAGGTTTTTTGAGTGTCATCCTGAATATTCACGAAA
GTCGTGGGCTGATATACTGGATTATGTTGAATGTGAAGAAGGAAAAGATTATTCAAATGC
CTTGAAGCAACTCCAAAAGTTTAAGAAGTTTAAATATAGAAAATGGTTCGACAAGAGACA
ATCTAAACGGCAGTGTATCATGGATACTTTGGGACTCAAGTCAAGGAGCTAGTGTGGTGA
GAGCATCTCAATCACCAGGTCGGGTTCGAAGCAGCATCTCCATTTTTTAGAGAGAAAGGT
TTGCCCCGATTTCTCCTCCTAGGAGTTCTCACTCAGGTGGGACTGTGGGAGCCTCGGGCA
CTAGATCAGTCGCCTCTAAAGTCAAGAAGCTAGTGTGGCGAATCTAGTTTTTTAGAGAGA
AACGTCGTCGCGATTCACCAAGGAAGCATGCTGTTTGGCTGGAGTGGATCGAGGCCACTT
GCCTTATGCGTGAATCTTGATTCCTGACTTATGCATGAATCTTGATTTGTGGCTTAATGT
TAGATTTTAATTCTAGCATATCCTAACTTGTAGTGTGCTAAAAAGCAGCTTTGTTGTTGT
CGAAGCGAGGATATTAAAATCTGGTTCCACCGG