Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d038925_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:6:167142116:167146479:1 gene:Zm00001d038925 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGTCGGACTTTGTCAGGAGTAGATATGATAAGCAAGAAGATTTCCAAGTTTTGTTGAGC
AAGAAAGATCCTGGAGAACAACCTCAGCACAAGGATTACCTGTGGATGGCTCACTGGACC
AAAGCAAGCAGCGCTGCAGAACCCCGAAACAATGACAGCAATCCTTTGGAGGATACCAAC
AATGGCACTACTACGAAAGATAGCGAGACCTTGCCTTATGAATTCATGAAATCTACAGTT
GCTGAAAGGCTCATGGTAGGAGTACGCCATGGAAGTGCCTCCATGCAGCATGTCCGACAA
TTCAAGTCTAGTATGCGGGGTATGCCACGACTTTCCAATGAATTGGGACCAAAGAATAGT
GAACAGGTTGATGAGTCTTTTGAAAAATCTTTGAAAAACGATGCTATGAACTTGAGAACT
AGGCAAGTTGTGTCAGAAACATATTCTATTCACAAGCTTTCAGAGTTACCGTTGGATTTT
CAGAACCTTGGGAGCTCAGATGATCCAAGTCCAGATTGGAGCCACTTTCCAATGTTCGAA
ATTAATCAAAAGATTGACAGTATTGTCAACCGTAAACGAAGGTCTCCACCTCTGGATCTA
AATGTGTCTGCATCCCATGTGATGGCCCTATCGTCACAAGAATACATGATGCACTCACAT
CAAACAGCTGATGAGAACATGGATACGTGCAAACCTGCAGAAGGCTTTGCATCTCGTGTA
GAAGATCATGCTGGCTTCAATTCAGATCCTCCAGGGCCAAAGTTAAAAGGGCAATTGTTG
GATACCATGTCATGTTCTTGCAGCAAGGATGACAACAACTCAGCAGATTGTCCAATAGAT
GAGCAGCACACAAGCCACTATTTTGCAAACTCAAAGCATGAACTACCCTCTGTATCTAAC
AAAAAGAAGTTCAAGTTTGCAGGAAACAACCACAATCGAATTGTTGCAAGTGCGTCCCAC
GATCTGAAGACAAAAAGATCTGCTGTCCATAAACAACAAAGTGCTGCAGAGGCAGTGTTC
TGTGCACCAGTACTTGATAGTGAGTTTCAGAATGAACCTATAACTATTTCCAACATCGAC
AAGAAGGATGGTGAAAATTTTCATGATATGTATAAATGTCTTGGCAAGGCTGTTTCATGT
CCTTTGTTACCTTATGAGCATCGTCATCTGAATACACAGAGAACGGAATCTGCAGAAAAT
TTGAAAGTCTGCACGCTTCCTGATCATCAAACTGCAAATAAATTGACAGAAAAGAGTCAT
GGTGAGCTGCTGACATATGGACCAAAGTCAAAGGAAATGTATACAGGTTCTTGTAACCAA
AGAAGGTCTTATTTCTTTGAAAAGTTAACGATTCCTTCCAAATCACAAAGTACATATCCT
AAAAATTCTGCGTCTTCAGGAAAATCTAGCGACTTTGGAGTTTGTATGTATGGCACCAAT
ATTGGCAGTCAGTTATTCAGAGCACAGAATCAATCTTCAGCTAAGACTGAAACATTGCAC
AGCGATACTCTCATTGGGTCCAAATCCCCAGCAGGCATCGCTTCATTGTCGGCACAAAAG
GACTATGGTTGCACGGACGAAGCAAAAAGTGAGCAGCTCGTAGCTCCGTCCAGGAGAGGA
GATTCAGGATACGGTAAAGAAGATGGATTTCATAATGTCAATGAAGGTCATGATGTTTGG
TCCAAAGCAACTATTGGTAGTAAGCAATCATGCATGCCCGGAACGGGAATCACGAACCTA
GATCTGATACTTTCCCAGATGAGCAGAATGAGAAATCAAATTTCCATTGGTAGAATTCAA
CCACCAATAGGTGCCGAGCCAAGTGACAGATGGCTCAAGCGCCTACAGCCTGACATACCA
GATCCTGACATCCCTGGTTCCAGGAGGCCAAACGTTGGAGGCAGCCCTCCACTCAGGCAA
AGAAATCGTTCGTTTGACATGGCACTTCCTTGCAACAGGACTGACACTGGAACAACTGAC
TGTGTTATGGAGGACCAGAGCTTGGATAAAGTGGAAAAAACGCAAGAAAAGCAAGAAAGT
ACCCCAATTCCAGCGAAGAGCGTGAATAGCTGGATAGGAAGATGGTGCCAGGGAGGCACT
CCTGTTTTCCATGAAGGCCCAGGCCAGGGAAGGCAAGCAACAAAGCCTGGCCGGCCATCT
GAAGAACTCGAAGGTCGGTTCCCAAGCATTGCAGCGATGGCGATGATGGGGCGAGCGATG
AACAAGCTTCGGCCGTGCGAGCATCAGAAGATGGGGCCACTTGTGGTGTGGAAGACAGAT
TGA

Peptide Sequence

PEP ID

Zm00001d038925_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:6:167142116:167146479:1 gene:Zm00001d038925 transcript:Zm00001d038925_T003 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MSDFVRSRYDKQEDFQVLLSKKDPGEQPQHKDYLWMAHWTKASSAAEPRNNDSNPLEDTN
NGTTTKDSETLPYEFMKSTVAERLMVGVRHGSASMQHVRQFKSSMRGMPRLSNELGPKNS
EQVDESFEKSLKNDAMNLRTRQVVSETYSIHKLSELPLDFQNLGSSDDPSPDWSHFPMFE
INQKIDSIVNRKRRSPPLDLNVSASHVMALSSQEYMMHSHQTADENMDTCKPAEGFASRV
EDHAGFNSDPPGPKLKGQLLDTMSCSCSKDDNNSADCPIDEQHTSHYFANSKHELPSVSN
KKKFKFAGNNHNRIVASASHDLKTKRSAVHKQQSAAEAVFCAPVLDSEFQNEPITISNID
KKDGENFHDMYKCLGKAVSCPLLPYEHRHLNTQRTESAENLKVCTLPDHQTANKLTEKSH
GELLTYGPKSKEMYTGSCNQRRSYFFEKLTIPSKSQSTYPKNSASSGKSSDFGVCMYGTN
IGSQLFRAQNQSSAKTETLHSDTLIGSKSPAGIASLSAQKDYGCTDEAKSEQLVAPSRRG
DSGYGKEDGFHNVNEGHDVWSKATIGSKQSCMPGTGITNLDLILSQMSRMRNQISIGRIQ
PPIGAEPSDRWLKRLQPDIPDPDIPGSRRPNVGGSPPLRQRNRSFDMALPCNRTDTGTTD
CVMEDQSLDKVEKTQEKQESTPIPAKSVNSWIGRWCQGGTPVFHEGPGQGRQATKPGRPS
EELEGRFPSIAAMAMMGRAMNKLRPCEHQKMGPLVVWKTD

Transcript Sequence

Transcript ID

Zm00001d038925_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:167142116:167146479:1 gene:Zm00001d038925 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

CCCGTCCCGTCTCCTGGGCTGGCTGACCAGTGACCAGCCCTCTCCCACGTCGCACGCCTG
TGGCTCCTGACCTTTCCACCACCGGAGTTAATGCCTCCGCCTCTCCGTCAGCGCCGCCTG
GCCTCGCCGTCTCGCTGTGCGCGGCGTGGGTGGTAGCAGTACCACGCGTGGTGGTTGATT
GAGCCATTGGATGGGCGGAATTGCCGTTGGCGAGGTGAGGCGTGGAGACTGAGGGGGAGC
TGTTGTGGCGCGTGTCTCCCTGTCGCTCACAGCTTCTTTTTATTCACTCCGCGCCCGGTT
CCGTTCCGGGGAATGGGTTCTGCGGAAGGATTCTGAGCCGCGGAGTCGGGGGAGGGAGGA
GGCGCGACGCTGGTGCGGCCGCTGCTGCCTCGATCTCTTGCCGCCTGGGCTCTCGTACGT
ACGTCCTCGTAGTCGTCGCCGCGGCGCAATTTGGCGGCGTGCGCGTTCCTTGCCTAGATT
GGTGCGATCCAATTTCTGAGAGGCGTAGAGGTGCGGCGCCACAGAACACGAGCGCGCGCG
CCTGGTGCTTGCTGAGAAGCATCTGCAACCGTCATTCCAGGCTCACGAGGAAACTCATTT
ACTCGAATCATGTCGGACTTTGTCAGGAGTAGATATGATAAGCAAGAAGATTTCCAAGTT
TTGTTGAGCAAGAAAGATCCTGGAGAACAACCTCAGCACAAGGATTACCTGTGGATGGCT
CACTGGACCAAAGCAAGCAGCGCTGCAGAACCCCGAAACAATGACAGCAATCCTTTGGAG
GATACCAACAATGGCACTACTACGAAAGATAGCGAGACCTTGCCTTATGAATTCATGAAA
TCTACAGTTGCTGAAAGGCTCATGGTAGGAGTACGCCATGGAAGTGCCTCCATGCAGCAT
GTCCGACAATTCAAGTCTAGTATGCGGGGTATGCCACGACTTTCCAATGAATTGGGACCA
AAGAATAGTGAACAGGTTGATGAGTCTTTTGAAAAATCTTTGAAAAACGATGCTATGAAC
TTGAGAACTAGGCAAGTTGTGTCAGAAACATATTCTATTCACAAGCTTTCAGAGTTACCG
TTGGATTTTCAGAACCTTGGGAGCTCAGATGATCCAAGTCCAGATTGGAGCCACTTTCCA
ATGTTCGAAATTAATCAAAAGATTGACAGTATTGTCAACCGTAAACGAAGGTCTCCACCT
CTGGATCTAAATGTGTCTGCATCCCATGTGATGGCCCTATCGTCACAAGAATACATGATG
CACTCACATCAAACAGCTGATGAGAACATGGATACGTGCAAACCTGCAGAAGGCTTTGCA
TCTCGTGTAGAAGATCATGCTGGCTTCAATTCAGATCCTCCAGGGCCAAAGTTAAAAGGG
CAATTGTTGGATACCATGTCATGTTCTTGCAGCAAGGATGACAACAACTCAGCAGATTGT
CCAATAGATGAGCAGCACACAAGCCACTATTTTGCAAACTCAAAGCATGAACTACCCTCT
GTATCTAACAAAAAGAAGTTCAAGTTTGCAGGAAACAACCACAATCGAATTGTTGCAAGT
GCGTCCCACGATCTGAAGACAAAAAGATCTGCTGTCCATAAACAACAAAGTGCTGCAGAG
GCAGTGTTCTGTGCACCAGTACTTGATAGTGAGTTTCAGAATGAACCTATAACTATTTCC
AACATCGACAAGAAGGATGGTGAAAATTTTCATGATATGTATAAATGTCTTGGCAAGGCT
GTTTCATGTCCTTTGTTACCTTATGAGCATCGTCATCTGAATACACAGAGAACGGAATCT
GCAGAAAATTTGAAAGTCTGCACGCTTCCTGATCATCAAACTGCAAATAAATTGACAGAA
AAGAGTCATGGTGAGCTGCTGACATATGGACCAAAGTCAAAGGAAATGTATACAGGTTCT
TGTAACCAAAGAAGGTCTTATTTCTTTGAAAAGTTAACGATTCCTTCCAAATCACAAAGT
ACATATCCTAAAAATTCTGCGTCTTCAGGAAAATCTAGCGACTTTGGAGTTTGTATGTAT
GGCACCAATATTGGCAGTCAGTTATTCAGAGCACAGAATCAATCTTCAGCTAAGACTGAA
ACATTGCACAGCGATACTCTCATTGGGTCCAAATCCCCAGCAGGCATCGCTTCATTGTCG
GCACAAAAGGACTATGGTTGCACGGACGAAGCAAAAAGTGAGCAGCTCGTAGCTCCGTCC
AGGAGAGGAGATTCAGGATACGGTAAAGAAGATGGATTTCATAATGTCAATGAAGGTCAT
GATGTTTGGTCCAAAGCAACTATTGGTAGTAAGCAATCATGCATGCCCGGAACGGGAATC
ACGAACCTAGATCTGATACTTTCCCAGATGAGCAGAATGAGAAATCAAATTTCCATTGGT
AGAATTCAACCACCAATAGGTGCCGAGCCAAGTGACAGATGGCTCAAGCGCCTACAGCCT
GACATACCAGATCCTGACATCCCTGGTTCCAGGAGGCCAAACGTTGGAGGCAGCCCTCCA
CTCAGGCAAAGAAATCGTTCGTTTGACATGGCACTTCCTTGCAACAGGACTGACACTGGA
ACAACTGACTGTGTTATGGAGGACCAGAGCTTGGATAAAGTGGAAAAAACGCAAGAAAAG
CAAGAAAGTACCCCAATTCCAGCGAAGAGCGTGAATAGCTGGATAGGAAGATGGTGCCAG
GGAGGCACTCCTGTTTTCCATGAAGGCCCAGGCCAGGGAAGGCAAGCAACAAAGCCTGGC
CGGCCATCTGAAGAACTCGAAGGTCGGTTCCCAAGCATTGCAGCGATGGCGATGATGGGG
CGAGCGATGAACAAGCTTCGGCCGTGCGAGCATCAGAAGATGGGGCCACTTGTGGTGTGG
AAGACAGATTGACCTCATATATATATGTTTTTGGGTGTAATATAGTGGTTTCTTTCCAAA
AAAAGAAAAAAAAATGAAAAGCAACAGTGAATTTTGCCTGGTTTATTGTTTATGGTGTAA
TAAACCATATGATGGCTCATGGTTTATTGTTTTCTGAAGTGAAAGTAGCTAGGTGTAGTG
GATACTGGTGATGTAATGGTCTGGTCTCATATACCAACAATATAATAATATTTTACTGTT
TACTGTGTCGTTATGATGATGTGTTGAGGCATTG