Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d038916_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:6:166888285:166895778:1 gene:Zm00001d038916 gene_biotype:protein_coding transcript_biotype:protein_coding description:zinc finger protein-related
Sequence

ATGGCATCAGGAGCGGTCACTTGTGCGTCAGATGGGAATGGTTTCAAAACATGCCAGTCA
CTCTGTCCATGTTATGTAAGTAGCAATGGAGCTTTTTCAAAACCAGTTAAGAGAGCAAGT
CAAGGAGAATCTAGCACAAATACTGACAGAAATCATAGCTCACACAATGCTGCTACTGAA
GCATCGCAATGTAACAACAGAGCCTGTTACATTCCCAGGTTAAGAGTAGAAAGTAGCTAC
CTTGGTGTTCATTCATCTACCCCTACAAAATCCTTTCGCCCTCTGTCTTTCAATTATGTT
GCACCTTCATTATATTCAAGCCTTTTCTCATGGGACACAGATACACTAGTATCCGGCCCA
GATAACATTTCTAAGCCAATTGATACCATATTCAAATTCCACAAGGCAATTCGCAAGGAT
TTAGAGTTTTTGGATTTGGAATCTGGAAAGCTTATTGACGGGAACGAGTCTTGCCTTAGC
CAATTCATTGGAAGGTTTCGTTTACTGTGGGGTCTATATAGAGCACACAGCAATGCTGAA
GATGAGATTGTATTTCCTGCTCTTGAATCGAAGGAGGCATTGCACAATGTTAGTCATTCA
TACACTCTTGATCACAAGCAGGAAGAAAAATTGTTCCAAGATATATCCACTGTACTATCT
GAACTTTCTCAACTACATGATGGTTTGAGCTATCCTCTTGATGTTGAAGCTGGAACAAAT
GATATTTCAAGTAATGAGATTGATTGGGCTAGAAAGCGTAATGAACTTTTGACAAAGCTT
CAAGGATTATGCAAATCTATCCGGGTCACGTTGTCAAATCATGTTCATAGAGAAGAACTT
GAGTTGTGGCCATTGTTCGATAAACATTTTTCTGTAGACGAGCAGGATAAGATTATCGGT
CATATAATTGGAACTACTGGTGCTGAGGTTCTGCAGTCAATGTTACCTTGGGTTACATCA
GCACTTAGTTTAGAGGAACAGAACATGATGCTGGATACATGGAAGCAAGCAACCAAAAAC
ACCATGTTTGATGAATGGCTAAATGAATGGTGGAAGGGACCTTCAACTTCATCTGACCCA
TCAGACAAGGCTTCTACTCCTTCAGAAGAAAGTCATTTTCAGGAGAATCTTGAACAAAAT
GACCAGATGTTTAGGCCTGGTTGGAAGGACATTTTCCGAATGAATCAGAGTGAGCTCGAG
GCTGAGATTCGAAAGGTCTCTCGAGATTCTACTCTTGATCCAAGGAGGAAGGCCTATCTG
ATCCAAAATCTCATGACCAGCCGTTGGATAGCTGCTCAGCAGAAATCACCACAACCAAGC
GTCGAAGGACATAATGGATGTACACGACGACCTGGATGTGTTGCTTCGTACCGAGACCCA
GGGAAACAAATATTTGGCTGTGAGCATTACAAAAGAAACTGCAAGCTTGTTGCTGCATGC
TGCGATAAGTTATTCACTTGCAGATTCTGTCACGATAAAGTTAGTGACCATACAATGGAC
AGGAAATCAGTGATGGAGATGATGTGCATGCAATGTCTGAATGTTCAACCTGTTGGTCCA
AATTGTCAATCCCCTTCTTGCAATGGACTGTCCATGGCCAAGTATTATTGTAGCATATGC
AAGTTCTTCGATGATGAAAGGAGTGTCTACCATTGTCCTTTTTGCAACTTGTGTCGCCTT
GGGAGCGGATTGGGCACTGATTTTTTTCATTGCATGAAGTGCAATTGTTGCCTTGGCATA
AAGATGATAGAACATAAATGCCGGGAAAAGATGCTAGAGATGAACTGTCCAATCTGCTGC
GACTTTTTGTTTACATCGAGTGCACCAGTTAAAGGCCTTCCTTGTGGCCACTTCATGCAT
TCGGCTTGTTTTCAGGCATATACTTGTACCCACTACACTTGTCCAATCTGCTGCAAATCC
TTGGGAGATATGACGGTGTATTTTGGCATGCTTGATGGTTTGCTGGCTGCAGAACAGCTT
CCTGAGGAATACCAGGACCGGTGCCAGGATATACTGTGTAACGACTGCGAGAGAAAAGGC
AGGTCACGGTTTCATTGGCTCTACCACAAGTGTGGTTTCTGTGGTTCTTACAACACCAGA
GTTATCAAGACTGATACGGCAGAGTGTTCTCGCCCTCTATAA

Peptide Sequence

PEP ID

Zm00001d038916_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:6:166888285:166895778:1 gene:Zm00001d038916 transcript:Zm00001d038916_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:zinc finger protein-related
Sequence

MASGAVTCASDGNGFKTCQSLCPCYVSSNGAFSKPVKRASQGESSTNTDRNHSSHNAATE
ASQCNNRACYIPRLRVESSYLGVHSSTPTKSFRPLSFNYVAPSLYSSLFSWDTDTLVSGP
DNISKPIDTIFKFHKAIRKDLEFLDLESGKLIDGNESCLSQFIGRFRLLWGLYRAHSNAE
DEIVFPALESKEALHNVSHSYTLDHKQEEKLFQDISTVLSELSQLHDGLSYPLDVEAGTN
DISSNEIDWARKRNELLTKLQGLCKSIRVTLSNHVHREELELWPLFDKHFSVDEQDKIIG
HIIGTTGAEVLQSMLPWVTSALSLEEQNMMLDTWKQATKNTMFDEWLNEWWKGPSTSSDP
SDKASTPSEESHFQENLEQNDQMFRPGWKDIFRMNQSELEAEIRKVSRDSTLDPRRKAYL
IQNLMTSRWIAAQQKSPQPSVEGHNGCTRRPGCVASYRDPGKQIFGCEHYKRNCKLVAAC
CDKLFTCRFCHDKVSDHTMDRKSVMEMMCMQCLNVQPVGPNCQSPSCNGLSMAKYYCSIC
KFFDDERSVYHCPFCNLCRLGSGLGTDFFHCMKCNCCLGIKMIEHKCREKMLEMNCPICC
DFLFTSSAPVKGLPCGHFMHSACFQAYTCTHYTCPICCKSLGDMTVYFGMLDGLLAAEQL
PEEYQDRCQDILCNDCERKGRSRFHWLYHKCGFCGSYNTRVIKTDTAECSRPL

Transcript Sequence

Transcript ID

Zm00001d038916_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:166888285:166895778:1 gene:Zm00001d038916 gene_biotype:protein_coding transcript_biotype:protein_coding description:zinc finger protein-related
Sequence

AATCAGCCGGTAAAAAAACAAAAATAGCCAACCGAGCGAGACAGAGGCACACAGCCGGAC
GCGCACCACGGTACCAGAGCACACACGGAGGTGCCACCGCGCGCCGCAGCCGGAGCATGG
CGACGCCGCTGGCCGGGAAGGGCCCGATCGCGGCGGCGATCCCGCGGTCCCCACCCCCAC
TGGCCGAGGGCGGCGCGGGAGGGTCGGCGGCCGAGGCGCCCGTGCTCATCTTCGTCTACT
TCCACAAGCGTCTACAGGCACCACTGCGACGCCGAGGACGCGGTTATTTTTCCAGCACTT
GACATTCGAGTGAAAAATGTCGCAGGGACATATTCTCTTGAACATAAAGGAGAAAATGAT
CTTTTCGCACATCTATTCACTCTGCTACAGTTGGATGTGCAGAATGATAATGCTATTAGG
AGGGAACTTGCATCCTGTACTGGAGCAATTCGGACGTTTGTATCCCAACACATGTCCAAG
GAAGAAGAACAGGTCTTCCCGTTACTCATCAAGAAGTTTTCACACGAAGAGCAAGCAGAT
TTAGTATGGCAGTTCTTATGTAGCATCCCTGTAAACATGATGGCAAAATTTCTTCCATGG
ATTTCTGCTTCTGTTTCTACAGATGAGAATCAAGATATTCTTGACTGCCTAAGTAAAATA
GTTCCTGAAGAAAAACTCCTCCAAGAGGTTGTTTTCACGTGGTTTGGAGGGAAATCAGAA
AGCAGTTCTACATGTGAGTCTAGCTCTGGCCAAACAGATAAACATGCACATTCACTTGAA
CACACCAAAATTGGAAAGAGGAAGTCTATAGAATCAAGTCAGCTTGTCACTCATCCAATT
GATGAGATTCTGTATTGGCACAATGCTGTTCTGAGAGAACTGAGTGATATAGCAGAGGAG
ACTAAAAGGATACATCAGTCTGGAGATTTTTCTGACATAGCAGGATTTAATATGAGGCTG
CAATTTATTGCAGATGTGTGCATTTTCCACAGGAGCATGCTGAAGAAGAACGGCGATTGA
ATAAATTTAGGAGTTTAATTGAACAAATTCAACTAGCAGGAGCCAAGTCAACTGTAGTTG
ATTTTCATTCAGAGTTATGCTCACAAGCTGATCAAATAATGCAGAAAATTGAGAGTCACT
TCAATGATGAGGAAATAAAGGTACTTCCTAAAGCTAGGATAAAGTTCTCACCGGAGAAAC
AGAGGGAACTTTTATATCAGAGTCTATGTGTCATGCCACTAAAGCTGTTGGAGCGTGTTC
TACCATGGTTTATAGTGAAACTGAATGATGCAGAGGCAGTGTCTTTTCTTCAGAATATGC
GGTTGGCAGGTTGTCTCTGTTATGTTCCTACTTCTCTCTTGAATAATAAAACAGTTTTCC
GTACCTTTCCTAATTTTTTATATTTAATGAATACGTCGCAGCACCTTCCTCTGAAACTGC
ATTGGTTACTCTTCTCTCTGGCTGGGCGTGCAAAGGTCGTCTGGAGGACACATCCAACCC
TGGAAAGTTCGTATGCATGGCATCAGGAGCGGTCACTTGTGCGTCAGATGGGAATGGTTT
CAAAACATGCCAGTCACTCTGTCCATGTTATGTAAGTAGCAATGGAGCTTTTTCAAAACC
AGTTAAGAGAGCAAGTCAAGGAGAATCTAGCACAAATACTGACAGAAATCATAGCTCACA
CAATGCTGCTACTGAAGCATCGCAATGTAACAACAGAGCCTGTTACATTCCCAGGTTAAG
AGTAGAAAGTAGCTACCTTGGTGTTCATTCATCTACCCCTACAAAATCCTTTCGCCCTCT
GTCTTTCAATTATGTTGCACCTTCATTATATTCAAGCCTTTTCTCATGGGACACAGATAC
ACTAGTATCCGGCCCAGATAACATTTCTAAGCCAATTGATACCATATTCAAATTCCACAA
GGCAATTCGCAAGGATTTAGAGTTTTTGGATTTGGAATCTGGAAAGCTTATTGACGGGAA
CGAGTCTTGCCTTAGCCAATTCATTGGAAGGTTTCGTTTACTGTGGGGTCTATATAGAGC
ACACAGCAATGCTGAAGATGAGATTGTATTTCCTGCTCTTGAATCGAAGGAGGCATTGCA
CAATGTTAGTCATTCATACACTCTTGATCACAAGCAGGAAGAAAAATTGTTCCAAGATAT
ATCCACTGTACTATCTGAACTTTCTCAACTACATGATGGTTTGAGCTATCCTCTTGATGT
TGAAGCTGGAACAAATGATATTTCAAGTAATGAGATTGATTGGGCTAGAAAGCGTAATGA
ACTTTTGACAAAGCTTCAAGGATTATGCAAATCTATCCGGGTCACGTTGTCAAATCATGT
TCATAGAGAAGAACTTGAGTTGTGGCCATTGTTCGATAAACATTTTTCTGTAGACGAGCA
GGATAAGATTATCGGTCATATAATTGGAACTACTGGTGCTGAGGTTCTGCAGTCAATGTT
ACCTTGGGTTACATCAGCACTTAGTTTAGAGGAACAGAACATGATGCTGGATACATGGAA
GCAAGCAACCAAAAACACCATGTTTGATGAATGGCTAAATGAATGGTGGAAGGGACCTTC
AACTTCATCTGACCCATCAGACAAGGCTTCTACTCCTTCAGAAGAAAGTCATTTTCAGGA
GAATCTTGAACAAAATGACCAGATGTTTAGGCCTGGTTGGAAGGACATTTTCCGAATGAA
TCAGAGTGAGCTCGAGGCTGAGATTCGAAAGGTCTCTCGAGATTCTACTCTTGATCCAAG
GAGGAAGGCCTATCTGATCCAAAATCTCATGACCAGCCGTTGGATAGCTGCTCAGCAGAA
ATCACCACAACCAAGCGTCGAAGGACATAATGGATGTACACGACGACCTGGATGTGTTGC
TTCGTACCGAGACCCAGGGAAACAAATATTTGGCTGTGAGCATTACAAAAGAAACTGCAA
GCTTGTTGCTGCATGCTGCGATAAGTTATTCACTTGCAGATTCTGTCACGATAAAGTTAG
TGACCATACAATGGACAGGAAATCAGTGATGGAGATGATGTGCATGCAATGTCTGAATGT
TCAACCTGTTGGTCCAAATTGTCAATCCCCTTCTTGCAATGGACTGTCCATGGCCAAGTA
TTATTGTAGCATATGCAAGTTCTTCGATGATGAAAGGAGTGTCTACCATTGTCCTTTTTG
CAACTTGTGTCGCCTTGGGAGCGGATTGGGCACTGATTTTTTTCATTGCATGAAGTGCAA
TTGTTGCCTTGGCATAAAGATGATAGAACATAAATGCCGGGAAAAGATGCTAGAGATGAA
CTGTCCAATCTGCTGCGACTTTTTGTTTACATCGAGTGCACCAGTTAAAGGCCTTCCTTG
TGGCCACTTCATGCATTCGGCTTGTTTTCAGGCATATACTTGTACCCACTACACTTGTCC
AATCTGCTGCAAATCCTTGGGAGATATGACGGTGTATTTTGGCATGCTTGATGGTTTGCT
GGCTGCAGAACAGCTTCCTGAGGAATACCAGGACCGGTGCCAGGATATACTGTGTAACGA
CTGCGAGAGAAAAGGCAGGTCACGGTTTCATTGGCTCTACCACAAGTGTGGTTTCTGTGG
TTCTTACAACACCAGAGTTATCAAGACTGATACGGCAGAGTGTTCTCGCCCTCTATAATT
TCTTTTATGCAATCCATTTGTATATATATATCGACGGGGTAGAAACCTTGTGACCGTAGG
TGTGATAGTTTTTTTATAGAGTGAACTGGGGGAGGAACCCCACCTGGATGTATTATGAGG
AAAAAGTGACTGTGCACATGAGGAGTCTGAGAATTACTCGCTCCCGTCCCAAACTAACTG
TATTTCTACGATTTGAAATATATTCGCTC