Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d038882_T019
CDS Infomation

cds chromosome:B73_RefGen_v4:6:166324717:166330453:-1 gene:Zm00001d038882 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative regulator of chromosome condensation (RCC1) family protein

Sequence

ATGCTAAGAGCAAGTACAGACAGTAGCCGGCTTAGTATTTCCAGTGCCCCTAGTTCTTCA
AGTCAAGGTTCTGGACAAGATGACATTGAATCCCTTGGTGATGTTTATGTGTGGGGTGAG
GTGTGGACTGATATGATCCCTGCAGAAGGATCCGCAAACTATTTGTGCTCCAAAGCAGAC
ATTTTAATTCCCAAACCACTTGAATCAGATGTTGTCTTGGACGTACAACAGATAGCGTGT
GGTTATAGGCACATTGCACTCACTACTAGGCAAGGAGAAGTATTTGCATGGGGCGAAGAA
CTTGGCGGACGACTTGGTCATGGGACCGATGCAGATATTAGCCGTCCTAAACTTGTCGAA
GCCTTAGCAGTGTCAAATGTAGAATATGTTGCGTGCGGCGAGTTCCATACTTGTGCTATA
ACTGCCTCTGGTGATTTGTACACTTGGGGTGATGGATACTACAATGCTGGATTGCTTGGA
CATGGTGCTGGAACTAGTCACTGGCTTCCAAAACGAGTCTCAGGACCTTTAGAAGGGGTT
CAGGTATTGTCTGTTTCATGTGGTTCATGGCATTCAGCACTGACCACATCAAGTGGTAAA
GTGTTCACCTTTGGTGATGGGACATTTGGTGCCCTTGGACATGGGAATCGTCATACTGTC
GCATATCCAAAGGAAGTCGAAACTTTGAGTGGATTTAGAACAATAAAAGTTGCCTGTGGA
CTCTGGCATTCTGCAGCGATTGTGGAGACCACTAATCAGGCAGGTGTGAATGTGATATCC
AGGAAGCTATTTACCTGGGGTGCTGGTGATAAGAATCCCCTAGGTCACGGGGATAAAGAT
GCTAGGCTAGTTCCTACTTGTGTTCAATCTCTCATTGATTATAATTTCCATCAGGTAGCT
TGTGGACATAGTATGACCATTGCCCTTTCTACATCTGGTCATGTTTTCACAATGGGCAGC
TCTAGCAATGGCCAGCTTGGGAATCCAAAATCTGATGGTAAACATCCTACCCCAGTACAA
GATAGGCTGGCTGGAGAATTGGTTGAAGAGATCTCATGTGGCTCATGCCATGTTGCAGTC
TTGACTTCACGAAGCGAAGTATATACATGGGGAATGGGAGCCAATGGGAGGCTGGGACAT
GGTGGTGTTGAAGATAAGAAAAAACCAACTCTTGTGGAAGCATTAAAAGATCGTCACGTT
AAAAGTATAGCATGTGGTTCTAATTTCACGACCTGCATTTGTATACATAAGTGGGTTTCA
GGTGCTGATCAGTCTGTCTGCTCAGGTTGTAGGCAACCATTTGGCTTCACAAGAAAGAGA
CATAATTGTTACAATTGTGGGCTTGTTCATTGCCATGCATGTAGTTCAAAAAAAGTTCTG
AAAGCTGCTTTGGCACCAACTCCTGGCAAACCACATCGCGTATGTGATTCATGCTTCATG
AAGCTTAAGGCAGCGGAGACCAGCAGCAACAGCTCACATAGCAAAAGAAATGCCATTGCT
CGTCGCTCTGTTGATAGCAAAGACAGGTCAGAGAGACCAGAAATAAGGTCTTCCAGGCTT
GCAACTGGATCAACAGCAGAACCACTCAAGCAAGCTGAGCTGAAAGCAGTTAGAAACGAG
ATAAAACCAGATCCTATGTCCACGATGAGGGCACCCCAAGTTCCTTCCATGCTACCTTTT
AACAATCTTGCTTTTGGCGCAACATTTGGTGGTCCAGCTAGTCTGAAGCCCATGACAATG
GCTCCAATGCCAATGGCCATGCCTATGTCACCAGCTCCTCTCACAAAGAAGCCAACTCCA
GCAGCAGCAACTCCTCTTTGTGGTAAAAGTGATACCGATAACTTGAAGATGGCTAAACAG
GTGCTGAATGAAGATATCTCAAAGTTGCAATCTCAGGTTAATAAACTGAAACAAAAATGT
GATGCCCAAGAAGAGCAACTGCAGAAAGCGGAAAGGAGAGCTGAACATTCTGCCTCTACA
GCTGCAGAAGAGTCTTCAAGGCGTAATGGTGTCTTGGAGTTCATTAGGTTCCTTGACAAT
GAGCTCAAGAGCATCGCAGATAGGGTGCCCAGCGACGCTGCCGACGGCTTAAAAGCCTTG
CAAAACCATTCGGAGAGGTTTCTCACAGAACAAGGTGTTCGTCCACTGGAAGCCACAGGT
ATGCATCGTAAGTGCGCAAGCATAGGCAACCTCGTAATGTCTCAGGACGGCAGTGCTGGA
AACGCGAGCAGCTCGGCTGCTTCCTTGGCGAGCGAGTCTCCATGCCACCGTATCATGGAG
AACAGCTCGAGAGCTAACGGCGACTTAGCACCGAAGCTCGGTGGTACCCATGGAGAAGTG
CAGCTGATTGAGCAGTTTGAACCGGGGGTGTATGTGACGCTCATCCAGCTTAGAGATGGC
ACTAAGGTGTTCAAGCGTGTCCGGTTCAGCAAGAGGAGGTTTGCGGAGCAGCAGGCCGAG
GAATGGTGGAGGGAGAACCAGGAGAGAGTGTTCAGGAAATACAACCACCCGGCCAACTAA

Peptide Sequence

PEP ID

Zm00001d038882_P019
PEP Infomation

pep chromosome:B73_RefGen_v4:6:166324717:166330453:-1 gene:Zm00001d038882 transcript:Zm00001d038882_T019 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative regulator of chromosome condensation (RCC1) family protein

Sequence

MLRASTDSSRLSISSAPSSSSQGSGQDDIESLGDVYVWGEVWTDMIPAEGSANYLCSKAD
ILIPKPLESDVVLDVQQIACGYRHIALTTRQGEVFAWGEELGGRLGHGTDADISRPKLVE
ALAVSNVEYVACGEFHTCAITASGDLYTWGDGYYNAGLLGHGAGTSHWLPKRVSGPLEGV
QVLSVSCGSWHSALTTSSGKVFTFGDGTFGALGHGNRHTVAYPKEVETLSGFRTIKVACG
LWHSAAIVETTNQAGVNVISRKLFTWGAGDKNPLGHGDKDARLVPTCVQSLIDYNFHQVA
CGHSMTIALSTSGHVFTMGSSSNGQLGNPKSDGKHPTPVQDRLAGELVEEISCGSCHVAV
LTSRSEVYTWGMGANGRLGHGGVEDKKKPTLVEALKDRHVKSIACGSNFTTCICIHKWVS
GADQSVCSGCRQPFGFTRKRHNCYNCGLVHCHACSSKKVLKAALAPTPGKPHRVCDSCFM
KLKAAETSSNSSHSKRNAIARRSVDSKDRSERPEIRSSRLATGSTAEPLKQAELKAVRNE
IKPDPMSTMRAPQVPSMLPFNNLAFGATFGGPASLKPMTMAPMPMAMPMSPAPLTKKPTP
AAATPLCGKSDTDNLKMAKQVLNEDISKLQSQVNKLKQKCDAQEEQLQKAERRAEHSAST
AAEESSRRNGVLEFIRFLDNELKSIADRVPSDAADGLKALQNHSERFLTEQGVRPLEATG
MHRKCASIGNLVMSQDGSAGNASSSAASLASESPCHRIMENSSRANGDLAPKLGGTHGEV
QLIEQFEPGVYVTLIQLRDGTKVFKRVRFSKRRFAEQQAEEWWRENQERVFRKYNHPAN

Transcript Sequence

Transcript ID

Zm00001d038882_T019
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:166324717:166330453:-1 gene:Zm00001d038882 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative regulator of chromosome condensation (RCC1) family protein

Sequence

CAACCGATCCCGCAGACCACTCGTTCCTTCCCCAACTATCGTTAGGCTTCTCCACCCCGC
CCTCCCCGCCCTCCCCGCCGAACGCGCCTCACTCTCCCTCCATGCAGATCAATGCGTCCT
TCCACCCCAACCGTGCTCCTCGCCCTTCTCTCGTCGTCCTCGTTCCCCCTAGACTGGCGT
GGAGTGAAGATCCATCCGGACTCCGATTGATTTCTTCTCCTGCTGAAGAAACGGAGAGAT
TCGGCCAAGATTGGGATCAATCTGCGCATGGTTGCAGGTGATCAAGATCCAATACTTGAA
AATAGGATGTTGACATGTTACTGTTTAGATGACACCAGATGATAATCTCTCAAAAAAGGC
AGTAAACTTATCAAGTATAGTAGGAAGGGAAGACCCAAGATTCGTGAGTTCAGACTTTCT
AGTGATGAAACATCATTGGTTTGGTATTCCCATAGCAAAGTGAAGTACCTTGTACTGTCT
TCTGTCTCTAGAATCATTCCTGGACAAAGAACTGCTGTATTTAGGAGGTTTTTACGCCCT
GAGAAGGACTACCTATCATTTTCTTTGATATACAAGAACGGACAACGTTCCCTTGACCTG
GTTTGCAAGGATCAAGCAGAAGTTGAGGTCTGGTTTTCAACGCTTGAGGCACTTATTACT
TCATGCCGTAAAAGTTATTCAGCTGATGGTCCAAGTGATAGATTATCAGTTTCTGACGAA
GTATCACATTACCAAGATACTTTTCATGATACAACACTAGATATTGCATCGAGTATCACA
CGTACTTTTAACTCAGCAAAAACAGATGTTGTATCTGATCGTGCAAATATGCTAAGAGCA
AGTACAGACAGTAGCCGGCTTAGTATTTCCAGTGCCCCTAGTTCTTCAAGTCAAGGTTCT
GGACAAGATGACATTGAATCCCTTGGTGATGTTTATGTGTGGGGTGAGGTGTGGACTGAT
ATGATCCCTGCAGAAGGATCCGCAAACTATTTGTGCTCCAAAGCAGACATTTTAATTCCC
AAACCACTTGAATCAGATGTTGTCTTGGACGTACAACAGATAGCGTGTGGTTATAGGCAC
ATTGCACTCACTACTAGGCAAGGAGAAGTATTTGCATGGGGCGAAGAACTTGGCGGACGA
CTTGGTCATGGGACCGATGCAGATATTAGCCGTCCTAAACTTGTCGAAGCCTTAGCAGTG
TCAAATGTAGAATATGTTGCGTGCGGCGAGTTCCATACTTGTGCTATAACTGCCTCTGGT
GATTTGTACACTTGGGGTGATGGATACTACAATGCTGGATTGCTTGGACATGGTGCTGGA
ACTAGTCACTGGCTTCCAAAACGAGTCTCAGGACCTTTAGAAGGGGTTCAGGTATTGTCT
GTTTCATGTGGTTCATGGCATTCAGCACTGACCACATCAAGTGGTAAAGTGTTCACCTTT
GGTGATGGGACATTTGGTGCCCTTGGACATGGGAATCGTCATACTGTCGCATATCCAAAG
GAAGTCGAAACTTTGAGTGGATTTAGAACAATAAAAGTTGCCTGTGGACTCTGGCATTCT
GCAGCGATTGTGGAGACCACTAATCAGGCAGGTGTGAATGTGATATCCAGGAAGCTATTT
ACCTGGGGTGCTGGTGATAAGAATCCCCTAGGTCACGGGGATAAAGATGCTAGGCTAGTT
CCTACTTGTGTTCAATCTCTCATTGATTATAATTTCCATCAGGTAGCTTGTGGACATAGT
ATGACCATTGCCCTTTCTACATCTGGTCATGTTTTCACAATGGGCAGCTCTAGCAATGGC
CAGCTTGGGAATCCAAAATCTGATGGTAAACATCCTACCCCAGTACAAGATAGGCTGGCT
GGAGAATTGGTTGAAGAGATCTCATGTGGCTCATGCCATGTTGCAGTCTTGACTTCACGA
AGCGAAGTATATACATGGGGAATGGGAGCCAATGGGAGGCTGGGACATGGTGGTGTTGAA
GATAAGAAAAAACCAACTCTTGTGGAAGCATTAAAAGATCGTCACGTTAAAAGTATAGCA
TGTGGTTCTAATTTCACGACCTGCATTTGTATACATAAGTGGGTTTCAGGTGCTGATCAG
TCTGTCTGCTCAGGTTGTAGGCAACCATTTGGCTTCACAAGAAAGAGACATAATTGTTAC
AATTGTGGGCTTGTTCATTGCCATGCATGTAGTTCAAAAAAAGTTCTGAAAGCTGCTTTG
GCACCAACTCCTGGCAAACCACATCGCGTATGTGATTCATGCTTCATGAAGCTTAAGGCA
GCGGAGACCAGCAGCAACAGCTCACATAGCAAAAGAAATGCCATTGCTCGTCGCTCTGTT
GATAGCAAAGACAGGTCAGAGAGACCAGAAATAAGGTCTTCCAGGCTTGCAACTGGATCA
ACAGCAGAACCACTCAAGCAAGCTGAGCTGAAAGCAGTTAGAAACGAGATAAAACCAGAT
CCTATGTCCACGATGAGGGCACCCCAAGTTCCTTCCATGCTACCTTTTAACAATCTTGCT
TTTGGCGCAACATTTGGTGGTCCAGCTAGTCTGAAGCCCATGACAATGGCTCCAATGCCA
ATGGCCATGCCTATGTCACCAGCTCCTCTCACAAAGAAGCCAACTCCAGCAGCAGCAACT
CCTCTTTGTGGTAAAAGTGATACCGATAACTTGAAGATGGCTAAACAGGTGCTGAATGAA
GATATCTCAAAGTTGCAATCTCAGGTTAATAAACTGAAACAAAAATGTGATGCCCAAGAA
GAGCAACTGCAGAAAGCGGAAAGGAGAGCTGAACATTCTGCCTCTACAGCTGCAGAAGAG
TCTTCAAGGCGTAATGGTGTCTTGGAGTTCATTAGGTTCCTTGACAATGAGCTCAAGAGC
ATCGCAGATAGGGTGCCCAGCGACGCTGCCGACGGCTTAAAAGCCTTGCAAAACCATTCG
GAGAGGTTTCTCACAGAACAAGGTGTTCGTCCACTGGAAGCCACAGGTATGCATCGTAAG
TGCGCAAGCATAGGCAACCTCGTAATGTCTCAGGACGGCAGTGCTGGAAACGCGAGCAGC
TCGGCTGCTTCCTTGGCGAGCGAGTCTCCATGCCACCGTATCATGGAGAACAGCTCGAGA
GCTAACGGCGACTTAGCACCGAAGCTCGGTGGTACCCATGGAGAAGTGCAGCTGATTGAG
CAGTTTGAACCGGGGGTGTATGTGACGCTCATCCAGCTTAGAGATGGCACTAAGGTGTTC
AAGCGTGTCCGGTTCAGCAAGAGGAGGTTTGCGGAGCAGCAGGCCGAGGAATGGTGGAGG
GAGAACCAGGAGAGAGTGTTCAGGAAATACAACCACCCGGCCAACTAACCAGCCTCACCA
GACTTCACCATTGGACACTTCAAGAAGAAGGCAAAGTTTTCTTCATGTTGCTTGGGGCAT
TGCTCCTGCGGCTGTGTGCCGTGGGCCTGTGGCGATGTAGAATTAGGTTGTGGATGGGGA
AGATGCTGATGTAGATTCTCATTCTGTTGTTGTTTACCTCCTACAGTTTACCCTTTCTCT
AGCTCACCTCCTACAGTTTACTGTTTCG