Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d038875_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:6:166212064:166214501:1 gene:Zm00001d038875 gene_biotype:protein_coding transcript_biotype:protein_coding description:Polygalacturonase

Sequence

ATGATGGCGCGGGGCGCCGTGCTGCTCCTGCTCGCGGCCGCCTTCGCCGCGGCGCTCCTG
CCGGACGCCGCGGAATCCCGCATCCTCCTCACGCTCCACGACTTCGGCGCCGTCGGCGAC
GGCGTCGCGGACGACACCAAGGCCTTGGCCGGCGCGTGGACGGCCGCGTGCGCCGCCGCG
GACGACGTCATCCTCAACGTGCCCGCCGGCGGGACATTCCGGATCTGGCCGCTCACGCTC
GCCGGACCCTGCAGGAGCGAGATCAAGCTGCTCATTTCCGGGGACATCGTCGCGCCGGAA
AGCCCCCAGGACTGGGGGCAAGGCCAGAGCGACCAGTGGCTCCACTTCCACAAGGTTCGG
GACCTCACGGTCACCGGCGGGGGCATCATCGACGGCAGAGGGCAGCAGTGGTGGGCGCAG
TCGCTTGCGCGCGCGCAGCCCGCTCCCAAGGCTGTTCACTTCGAGGACTGCCAGGGGATC
AGCGTGAAGGGCATCACCTTGCAGAACAGCCAGTCGTACCACCTGACGTTCACCCGGAGC
TCCGACGTCGAGGCCAATTACCTCAGGGTGACCTCGCCGGAGCACAGCGTCGACACCAAG
GGCATTCACCTCGTTGACTCGTACAATGTTCACGTCATGGATAACCTCATCTCCACAGGT
GATGACTGCGTCTCCATAGTGGGCAACTGCACGGATGTCCGTCTAAGAGCCATCTCATGC
GGACCTGGCCATGGTATCAGCATCGGAACCTTAGGAGTAAACAGCTCCGTCGATTACGTG
GAGAAGATCAAAGTCGACACCTTGTTCATCTCAAACGCCGAGAACGGCGTGCGCGTGAGG
ACCACCGAGAACGGCGGCGGCGGCGGCTTCGCTCGCAAGGTGAAGTTCGAGAGCATCGTC
ATGAGGAACGTCACCAACCCCATCATCGTCGACCAGGGGATCTCCTCTGACGATCCGCCA
CCTTCATCGCCTGAAGCAGTAGCACTGGTACACCACACACTGATCAGACTTCCATCACTG
TCTGCCTTTACGCCGCGGGACGCCGCAGCATACATTAGTGTCCGGCAAGCAGTGTCTCTG
AACTCACGCGCCGGAAAATTCTGCGCCGCCCAGGCCGCGACGGCGTCGGCGGCAGTGCAG
GTGGAGAAGATCAACTACATCGACATCACGGGCACGTCGGCGTCGGAGCGCGCGGTCACG
TTCTCGTGCAGCGACGCCCGGCCGTGCAGGCGCCTGTCGCTCGACAACGTGAACCTGACC
CAGGTGGACGGGAGCGAGGCGTCGTCCTACTGCCGCCAGGCGTTCGGGAGGAGCGTCGGC
ACCGTTGTCCCGGAGTCCTGCCTCTCCAAGGAGGACTTCGTCCACCACGTCCCGCCGCAG
CGTTCTGAGGAAGACGGAGAAGACTCAGAATCGTGA

Peptide Sequence

PEP ID

Zm00001d038875_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:6:166212064:166214501:1 gene:Zm00001d038875 transcript:Zm00001d038875_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Polygalacturonase

Sequence

MMARGAVLLLLAAAFAAALLPDAAESRILLTLHDFGAVGDGVADDTKALAGAWTAACAAA
DDVILNVPAGGTFRIWPLTLAGPCRSEIKLLISGDIVAPESPQDWGQGQSDQWLHFHKVR
DLTVTGGGIIDGRGQQWWAQSLARAQPAPKAVHFEDCQGISVKGITLQNSQSYHLTFTRS
SDVEANYLRVTSPEHSVDTKGIHLVDSYNVHVMDNLISTGDDCVSIVGNCTDVRLRAISC
GPGHGISIGTLGVNSSVDYVEKIKVDTLFISNAENGVRVRTTENGGGGGFARKVKFESIV
MRNVTNPIIVDQGISSDDPPPSSPEAVALVHHTLIRLPSLSAFTPRDAAAYISVRQAVSL
NSRAGKFCAAQAATASAAVQVEKINYIDITGTSASERAVTFSCSDARPCRRLSLDNVNLT
QVDGSEASSYCRQAFGRSVGTVVPESCLSKEDFVHHVPPQRSEEDGEDSES

Transcript Sequence

Transcript ID

Zm00001d038875_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:166212064:166214501:1 gene:Zm00001d038875 gene_biotype:protein_coding transcript_biotype:protein_coding description:Polygalacturonase

Sequence

ACGGCCTGTGCACGCGCTGACGCGCGCGCGCCACCCATCCTTGTGACCGTGTCCGTCGGG
CGAGCCTGCGGTCTGCGCGCTTCAAGTAGCACCCTACCGGTGCGCGCGCACCTCAAAACG
TAGTCAAGTGAGCGGTCTCATTCTGCTCTGCTGCTGCAACTGCAAGCGCGGAATCTGTTC
GATGATGGCGCGGGGCGCCGTGCTGCTCCTGCTCGCGGCCGCCTTCGCCGCGGCGCTCCT
GCCGGACGCCGCGGAATCCCGCATCCTCCTCACGCTCCACGACTTCGGCGCCGTCGGCGA
CGGCGTCGCGGACGACACCAAGGCCTTGGCCGGCGCGTGGACGGCCGCGTGCGCCGCCGC
GGACGACGTCATCCTCAACGTGCCCGCCGGCGGGACATTCCGGATCTGGCCGCTCACGCT
CGCCGGACCCTGCAGGAGCGAGATCAAGCTGCTCATTTCCGGGGACATCGTCGCGCCGGA
AAGCCCCCAGGACTGGGGGCAAGGCCAGAGCGACCAGTGGCTCCACTTCCACAAGGTTCG
GGACCTCACGGTCACCGGCGGGGGCATCATCGACGGCAGAGGGCAGCAGTGGTGGGCGCA
GTCGCTTGCGCGCGCGCAGCCCGCTCCCAAGGCTGTTCACTTCGAGGACTGCCAGGGGAT
CAGCGTGAAGGGCATCACCTTGCAGAACAGCCAGTCGTACCACCTGACGTTCACCCGGAG
CTCCGACGTCGAGGCCAATTACCTCAGGGTGACCTCGCCGGAGCACAGCGTCGACACCAA
GGGCATTCACCTCGTTGACTCGTACAATGTTCACGTCATGGATAACCTCATCTCCACAGG
TGATGACTGCGTCTCCATAGTGGGCAACTGCACGGATGTCCGTCTAAGAGCCATCTCATG
CGGACCTGGCCATGGTATCAGCATCGGAACCTTAGGAGTAAACAGCTCCGTCGATTACGT
GGAGAAGATCAAAGTCGACACCTTGTTCATCTCAAACGCCGAGAACGGCGTGCGCGTGAG
GACCACCGAGAACGGCGGCGGCGGCGGCTTCGCTCGCAAGGTGAAGTTCGAGAGCATCGT
CATGAGGAACGTCACCAACCCCATCATCGTCGACCAGGGGATCTCCTCTGACGATCCGCC
ACCTTCATCGCCTGAAGCAGTAGCACTGGTACACCACACACTGATCAGACTTCCATCACT
GTCTGCCTTTACGCCGCGGGACGCCGCAGCATACATTAGTGTCCGGCAAGCAGTGTCTCT
GAACTCACGCGCCGGAAAATTCTGCGCCGCCCAGGCCGCGACGGCGTCGGCGGCAGTGCA
GGTGGAGAAGATCAACTACATCGACATCACGGGCACGTCGGCGTCGGAGCGCGCGGTCAC
GTTCTCGTGCAGCGACGCCCGGCCGTGCAGGCGCCTGTCGCTCGACAACGTGAACCTGAC
CCAGGTGGACGGGAGCGAGGCGTCGTCCTACTGCCGCCAGGCGTTCGGGAGGAGCGTCGG
CACCGTTGTCCCGGAGTCCTGCCTCTCCAAGGAGGACTTCGTCCACCACGTCCCGCCGCA
GCGTTCTGAGGAAGACGGAGAAGACTCAGAATCGTGA