Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d038838_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:6:165588358:165592492:1 gene:Zm00001d038838 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calmodulin binding protein isoform 1%3B Calmodulin binding protein isoform 2

Sequence

ATGGGGAAGTCTCCGGCGAAGTGGATCAAGTCCGTGCTCTTCGGGAAAAGGTCGTCGTCG
AGGTCCGGCTCCACCAAGGCCAAGGATTTATCGAAGGGTACGACTAACAAAGCAGCAGCT
GCTGCTGCTGCTGCTGCCGGGAAGGAGCCCGCGTTCTCTGAGAGCTCTCCGGTCATCTCG
GAGCCTGTGCTTGTTAGCGCCCACAACAATGAGACCGCGCGGGAGGCCGCTAAGGGTGAG
AATTCCAGCGTGCAAGAAGTGCCAGTGACTGATGTCAGTCAAGACTTGGAGAAGCAGGGC
ACTGTTGGGTCTGATACGTCTAATGATGCTGAGAGGTTGAGGGAAGAGCAAGCGGCCGTG
AAGGCACAAGCTGCCTTCCGTGGTTATCTGGCACGCCGAGCATTCCGTGCCCTGAAAGGG
ATCATAAGACTACAGGCACTGATTCGGGGACATCTTGTAAGGAGGCAAGCTGTTTCAACT
CTCCGTGCCACATGGTTGATTGTGAAGTTTCAAGCCCTTGTCCGTGGAAGGAACGTTAGA
CTTTCTAATGTTTCCATTCAAGCAACTACGGAACTTTCCCAACAGAACTTCGGGGGTTCT
AAACCTGGTTCCTGGAAGGAGAAGTTGTCTTCAAATGCATTTGCTCGGAAGCTTCTCTCT
TCACCAATTGTGGTTGAGGCTCTTCACGTCCAGTATGATGAGATGGACCCTAATTCGGCC
TTCAATTGGTTAGAGAGGTGGACAGTAAGTCATGTCTGGAAGCCTATTTCCCAACCAAAG
AGAGTTGGCACTGATGCTAAGCCTCATACAAGGAAGGCCAGTTATGCAATGGAAACAGAG
TCAGCGAAATTAAAGCGTAATGCACGGAAGAGCCCTGCAGTGCCATTTGAGCCTTCTCAA
ACAAACACCACCATTGAAAATGAGAAGACAAGACGGAATCCAAGGAAATTAAGTAGCACT
CCTGCTGAGTCAGTTCCCGATGGCCAGTTAACAGAACTTGAGAAGGTTAAACGTAGCCTT
AGGAAGGTTACTAGTTCCACGGTTGAAACCTCAAAGGTGCCTAGCCCAACAACTGAGATT
CCTGACCGTCAAGAGGTACAATGTGAGAGACCACTAAGAAGTGCAAAGCAAGCTCCAATT
CATGTTGAGAATCAAGAACCTCAGAATGTTAATCTATCGGAGAATGCAAAGATGGATATT
CTGGTACCAGATATCCAGCCTGACGTGGAAGTTGCTTCAGATCTAGTCACAATCACAAAT
GAAGAAAAAGTTGATGAGACACCGTCTGTTGTTGCTCCAGCGGCTGAAATTATGCCACTG
CAAGACATCAACAGCGAAGAAAATGCTTTGGTGAATGATGTGGAAGAGAGATCCAAAGAA
GAACATTCATCTACTGATAACCTGAAAGGCAGCAAGAGGAGGTCTTCATTCTCAGCTAAA
CCTGAATATCCAGAAAATGGCTCCAAAAATTCTCCAGCCCTGCCAAGCTACATGGCTGCT
ACACAATCTGCAAAGGCGAAACTGCGGGGGAATAGTTCACCAAGACTTAGCTCTGATTCA
GCAGAGAAAAACGGGTTCACTCGTCGTCACTCCCTTCCGTCCCCTAACAATGGTAAGATA
ATTTCACATTCTCCACGTACGCAAAGGCCAACCCATGCTGGTGGCAAGGACGGAGCAAAA
GGCGACAAGGCTATGCTGTCATCAAGAGATGCGAGCGGTATGTAG

Peptide Sequence

PEP ID

Zm00001d038838_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:6:165588358:165592492:1 gene:Zm00001d038838 transcript:Zm00001d038838_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calmodulin binding protein isoform 1%3B Calmodulin binding protein isoform 2

Sequence

MGKSPAKWIKSVLFGKRSSSRSGSTKAKDLSKGTTNKAAAAAAAAAGKEPAFSESSPVIS
EPVLVSAHNNETAREAAKGENSSVQEVPVTDVSQDLEKQGTVGSDTSNDAERLREEQAAV
KAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVSTLRATWLIVKFQALVRGRNVR
LSNVSIQATTELSQQNFGGSKPGSWKEKLSSNAFARKLLSSPIVVEALHVQYDEMDPNSA
FNWLERWTVSHVWKPISQPKRVGTDAKPHTRKASYAMETESAKLKRNARKSPAVPFEPSQ
TNTTIENEKTRRNPRKLSSTPAESVPDGQLTELEKVKRSLRKVTSSTVETSKVPSPTTEI
PDRQEVQCERPLRSAKQAPIHVENQEPQNVNLSENAKMDILVPDIQPDVEVASDLVTITN
EEKVDETPSVVAPAAEIMPLQDINSEENALVNDVEERSKEEHSSTDNLKGSKRRSSFSAK
PEYPENGSKNSPALPSYMAATQSAKAKLRGNSSPRLSSDSAEKNGFTRRHSLPSPNNGKI
ISHSPRTQRPTHAGGKDGAKGDKAMLSSRDASGM

Transcript Sequence

Transcript ID

Zm00001d038838_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:165588358:165592492:1 gene:Zm00001d038838 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calmodulin binding protein isoform 1%3B Calmodulin binding protein isoform 2

Sequence

TTTTTCTTTTCCGCGCAGCTGATTTATTTTCTCTCGCTCTCGCCTTCGCGGCGCTGCCTG
CGCAGTACTACGAGCTAGCAGGCTAGCAGCACCAGGACCAGGAGCCTCTTCCCACACTTC
CGCTCTCCCTCTCTCTCTTTCCTCTCGAGAATGGTTGTGTAGGCGGGCGCAGGAGGGAGG
AGAGAGAGGGGAGCTAGCTAGGGTTTTGCGTCGCCGCCTTCTGTTACCCTTAGGCTCTGA
ACCCCTCCGGTCCGGTGCGGCGGCGGATTAGGCTCCGATGGGGAAGTCTCCGGCGAAGTG
GATCAAGTCCGTGCTCTTCGGGAAAAGGTCGTCGTCGAGGTCCGGCTCCACCAAGGCCAA
GGATTTATCGAAGGGTACGACTAACAAAGCAGCAGCTGCTGCTGCTGCTGCTGCCGGGAA
GGAGCCCGCGTTCTCTGAGAGCTCTCCGGTCATCTCGGAGCCTGTGCTTGTTAGCGCCCA
CAACAATGAGACCGCGCGGGAGGCCGCTAAGGGTGAGAATTCCAGCGTGCAAGAAGTGCC
AGTGACTGATGTCAGTCAAGACTTGGAGAAGCAGGGCACTGTTGGGTCTGATACGTCTAA
TGATGCTGAGAGGTTGAGGGAAGAGCAAGCGGCCGTGAAGGCACAAGCTGCCTTCCGTGG
TTATCTGGCACGCCGAGCATTCCGTGCCCTGAAAGGGATCATAAGACTACAGGCACTGAT
TCGGGGACATCTTGTAAGGAGGCAAGCTGTTTCAACTCTCCGTGCCACATGGTTGATTGT
GAAGTTTCAAGCCCTTGTCCGTGGAAGGAACGTTAGACTTTCTAATGTTTCCATTCAAGC
AACTACGGAACTTTCCCAACAGAACTTCGGGGGTTCTAAACCTGGTTCCTGGAAGGAGAA
GTTGTCTTCAAATGCATTTGCTCGGAAGCTTCTCTCTTCACCAATTGTGGTTGAGGCTCT
TCACGTCCAGTATGATGAGATGGACCCTAATTCGGCCTTCAATTGGTTAGAGAGGTGGAC
AGTAAGTCATGTCTGGAAGCCTATTTCCCAACCAAAGAGAGTTGGCACTGATGCTAAGCC
TCATACAAGGAAGGCCAGTTATGCAATGGAAACAGAGTCAGCGAAATTAAAGCGTAATGC
ACGGAAGAGCCCTGCAGTGCCATTTGAGCCTTCTCAAACAAACACCACCATTGAAAATGA
GAAGACAAGACGGAATCCAAGGAAATTAAGTAGCACTCCTGCTGAGTCAGTTCCCGATGG
CCAGTTAACAGAACTTGAGAAGGTTAAACGTAGCCTTAGGAAGGTTACTAGTTCCACGGT
TGAAACCTCAAAGGTGCCTAGCCCAACAACTGAGATTCCTGACCGTCAAGAGGTACAATG
TGAGAGACCACTAAGAAGTGCAAAGCAAGCTCCAATTCATGTTGAGAATCAAGAACCTCA
GAATGTTAATCTATCGGAGAATGCAAAGATGGATATTCTGGTACCAGATATCCAGCCTGA
CGTGGAAGTTGCTTCAGATCTAGTCACAATCACAAATGAAGAAAAAGTTGATGAGACACC
GTCTGTTGTTGCTCCAGCGGCTGAAATTATGCCACTGCAAGACATCAACAGCGAAGAAAA
TGCTTTGGTGAATGATGTGGAAGAGAGATCCAAAGAAGAACATTCATCTACTGATAACCT
GAAAGGCAGCAAGAGGAGGTCTTCATTCTCAGCTAAACCTGAATATCCAGAAAATGGCTC
CAAAAATTCTCCAGCCCTGCCAAGCTACATGGCTGCTACACAATCTGCAAAGGCGAAACT
GCGGGGGAATAGTTCACCAAGACTTAGCTCTGATTCAGCAGAGAAAAACGGGTTCACTCG
TCGTCACTCCCTTCCGTCCCCTAACAATGGTAAGATAATTTCACATTCTCCACGTACGCA
AAGGCCAACCCATGCTGGTGGCAAGGACGGAGCAAAAGGCGACAAGGCTATGCTGTCATC
AAGAGATGCGAGCGGTATGTAGAAAAGAGAGACTTTGAAAACTTATTACATTTGTATGTC
TACCGCATGCATTTTGATAATATGAACTTGATCAGTCTTCTTGTTTTAATCTGACTGAGC
CTAAACAAATACTGCTTAACTTGTAACATCAGGTATTAAAACATGGTAGTTTGGAAGCTA
ATGGATGAGGACG