Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d038835_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:6:165526328:165530828:1 gene:Zm00001d038835 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rbcl rna s1-binding domain protein2 description: rbcl rna s1-binding domain protein2
Sequence

ATGCCGCCGCCCTCCCTCGTCTCCATCCTCCCCGCCGCGTCCATCTCGCCACGAAGACGC
CAAGCAAAGCACCCCAAGACCCCCACCGCGAGCCATCCCTTCTTCTCCCGAAGACTTGTG
TCCCAACCGCCGCGCCACGCCTCGATCTCCCCCTCCGCTGCCGGCGGGAGCGGGAGCGAC
GAGCTCCACCTTCTCGAGAAGCCGTTACCTGCCGTCGCAGAGGATAACGAGGCCGAGGAG
GAGCTCGAGTCTGCTCCGGTGTCATCAACAGAAGAAGCGCTCGCGCCTTTTCTCAAGTTC
TTCCAGGTGAAGAGCACCGACCCCGACGTGGGCGCAGACACCGCGGATGGCGAGGTGCCG
GAGGAGGCGTCAAGGAGAGATGTATTGTCCGCCGCTGGTGAGCGTGGGGTTAGTTACTAC
GACCCCAAGCCCGGGGACTTCGTCGCCGGCGTCGTGGTCCGGAGTGACGGGAGGACGCTC
GACGTCGACATCGGTTCCAGCGGCGAACCAGCGCTGATGCTGGCCAAGGAGTCGGCGCCG
GTGCCCGCGGAGGAGTTCGGGTACCTAGCGTGCGACGTCGCGTCCAAGTGTGCGGCGGAG
TTTGCAGCGGAAGGGCGGGTCGGCGTCGTGGTCAGGCAATTCAGGGGAGGAGGAGAGGGG
GACGGGGAGGCGATCATCGGGAGGAATGGGAAGGAGAAAGTTGCGCCGGTGCTGCGCGCC
GGTACGATCGTGTTCGCTGAGGTTCTCGGCCGAACACTTGGCGGGCGGCCGCTGCTGTCA
GCGCGCAGACTGTTCCGGCGCGTCGCGTGGCACAGAGCGAGGCAGATAAAACAGCTAAAT
GTACCCATCAAGATCAAAATTTATGAGTGGAATGCTAGTGGCTTGCTATCTAGAATTGAG
GGCCTTCGGGCATTCCTTCCCAAACCTGAGATGATGACTAGACCAAGAAATTTCACTGAC
CTAAAGAACAAAGTTGATCAAGAAATGCATGTCTGCATTACGAGGATTGATGAAGAGACC
AACGAATTGATAATTAGTGAAAAAGAGGCATGGGCGGTGACATGCCTTAGAGAAGGGACT
CTCTTGCAAGGCACAGTACGCAAGTTGTTTCCATACGGTGCACAAATTAGGATTGGCGAG
ACTAACAGAGGTGGTTTACTACATATCTCGAACATGACACATGGCAAGCTGAGATCTGTG
GCTGATGTGCTGAAAGTCGGCGAGACGGTGAAAGCTCTTGTCATAAAATCAACTCCAGAC
AGAATTGCTCTGAGCACAAAGGACCTCGAGAGCGAACCTGGATTGCTTATCACTAACAAA
GAGAAGGTGTTTTCTGAGGCTGAAGAGATGGCGCGAAGATACCGGGAGCAAATTGCAGAG
CCACAGCCACCTGGATCCATTGCCGCGGAAGACTCCTGTGACGATGCTGTCCCCTTCAAC
GACGAATCCCGGTCCTATGCTAACTGGAAGTGGCTGAAATTTAGCAAGTCCGACGACGTG
GCAAACCCCAAATCTGGCGTCGAATCGTAA

Peptide Sequence

PEP ID

Zm00001d038835_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:6:165526328:165530828:1 gene:Zm00001d038835 transcript:Zm00001d038835_T002 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rbcl rna s1-binding domain protein2 description: rbcl rna s1-binding domain protein2
Sequence

MPPPSLVSILPAASISPRRRQAKHPKTPTASHPFFSRRLVSQPPRHASISPSAAGGSGSD
ELHLLEKPLPAVAEDNEAEEELESAPVSSTEEALAPFLKFFQVKSTDPDVGADTADGEVP
EEASRRDVLSAAGERGVSYYDPKPGDFVAGVVVRSDGRTLDVDIGSSGEPALMLAKESAP
VPAEEFGYLACDVASKCAAEFAAEGRVGVVVRQFRGGGEGDGEAIIGRNGKEKVAPVLRA
GTIVFAEVLGRTLGGRPLLSARRLFRRVAWHRARQIKQLNVPIKIKIYEWNASGLLSRIE
GLRAFLPKPEMMTRPRNFTDLKNKVDQEMHVCITRIDEETNELIISEKEAWAVTCLREGT
LLQGTVRKLFPYGAQIRIGETNRGGLLHISNMTHGKLRSVADVLKVGETVKALVIKSTPD
RIALSTKDLESEPGLLITNKEKVFSEAEEMARRYREQIAEPQPPGSIAAEDSCDDAVPFN
DESRSYANWKWLKFSKSDDVANPKSGVES

Transcript Sequence

Transcript ID

Zm00001d038835_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:165526328:165530828:1 gene:Zm00001d038835 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rbcl rna s1-binding domain protein2 description: rbcl rna s1-binding domain protein2
Sequence

ATGCCGCCGCCCTCCCTCGTCTCCATCCTCCCCGCCGCGTCCATCTCGCCACGAAGACGC
CAAGCAAAGCACCCCAAGACCCCCACCGCGAGCCATCCCTTCTTCTCCCGAAGACTTGTG
TCCCAACCGCCGCGCCACGCCTCGATCTCCCCCTCCGCTGCCGGCGGGAGCGGGAGCGAC
GAGCTCCACCTTCTCGAGAAGCCGTTACCTGCCGTCGCAGAGGATAACGAGGCCGAGGAG
GAGCTCGAGTCTGCTCCGGTGTCATCAACAGAAGAAGCGCTCGCGCCTTTTCTCAAGTTC
TTCCAGGTGAAGAGCACCGACCCCGACGTGGGCGCAGACACCGCGGATGGCGAGGTGCCG
GAGGAGGCGTCAAGGAGAGATGTATTGTCCGCCGCTGGTGAGCGTGGGGTTAGTTACTAC
GACCCCAAGCCCGGGGACTTCGTCGCCGGCGTCGTGGTCCGGAGTGACGGGAGGACGCTC
GACGTCGACATCGGTTCCAGCGGCGAACCAGCGCTGATGCTGGCCAAGGAGTCGGCGCCG
GTGCCCGCGGAGGAGTTCGGGTACCTAGCGTGCGACGTCGCGTCCAAGTGTGCGGCGGAG
TTTGCAGCGGAAGGGCGGGTCGGCGTCGTGGTCAGGCAATTCAGGGGAGGAGGAGAGGGG
GACGGGGAGGCGATCATCGGGAGGAATGGGAAGGAGAAAGTTGCGCCGGTGCTGCGCGCC
GGTACGATCGTGTTCGCTGAGGTTCTCGGCCGAACACTTGGCGGGCGGCCGCTGCTGTCA
GCGCGCAGACTGTTCCGGCGCGTCGCGTGGCACAGAGCGAGGCAGATAAAACAGCTAAAT
GTACCCATCAAGATCAAAATTTATGAGTGGAATGCTAGTGGCTTGCTATCTAGAATTGAG
GGCCTTCGGGCATTCCTTCCCAAACCTGAGATGATGACTAGACCAAGAAATTTCACTGAC
CTAAAGAACAAAGTTGATCAAGAAATGCATGTCTGCATTACGAGGATTGATGAAGAGACC
AACGAATTGATAATTAGTGAAAAAGAGGCATGGGCGGTGACATGCCTTAGAGAAGGGACT
CTCTTGCAAGGCACAGTACGCAAGTTGTTTCCATACGGTGCACAAATTAGGATTGGCGAG
ACTAACAGAGGTGGTTTACTACATATCTCGAACATGACACATGGCAAGCTGAGATCTGTG
GCTGATGTGCTGAAAGTCGGCGAGACGGTGAAAGCTCTTGTCATAAAATCAACTCCAGAC
AGAATTGCTCTGAGCACAAAGGACCTCGAGAGCGAACCTGGATTGCTTATCACTAACAAA
GAGAAGGTGTTTTCTGAGGCTGAAGAGATGGCGCGAAGATACCGGGAGCAAATTGCAGAG
CCACAGCCACCTGGATCCATTGCCGCGGAAGACTCCTGTGACGATGCTGTCCCCTTCAAC
GACGAATCCCGGTCCTATGCTAACTGGAAGTGGCTGAAATTTAGCAAGTCCGACGACGTG
GCAAACCCCAAATCTGGCGTCGAATCGTAATCGTGGTGCAGGAACTCTGTAGAAATTTTG
ATCAATTCAGATATTCAGTTTCCATGCT