Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d038815_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:6:165173445:165179189:-1 gene:Zm00001d038815 gene_biotype:protein_coding transcript_biotype:protein_coding description:CASC3/Barentsz eIF4AIII binding
Sequence

ATGGCCGACAAGGAGAAGCCGGAGGCTGAGGAGGAGGAGTACGAGAGCGACCTCGACGAC
GCGCCCCTCTCCGCGTTGTGGCGCCGCGACGCTGCGAGCGACGACGAGGGCGAGGACGAG
GATGAGGACGGAGGGACGCCCTTGAGGCGGAGGAAAGCCGGATTCGATGCAGATTCCGAC
GGGCAGGGCGCCGCCGAGGTTTACGACGAGGAAGGCGAGGAGGAGTACGGGGGGTTCGAA
GCAGAGGACGGCGGAGTGCGCGGGGTGGCTGCCGAAGCGGTTGCCGGTGCGGGGCAGGAG
GGGGGCGAGGCTGGGGATGGGGAAGTTGAAAAGGCGGGTGAGGCAGCGCCACAGGATGAA
GAGGAGGACAAGAAGGGGAACGAGCCCTACGCTGTTCCGACGACCGGCGCCTTCTACATG
CACGACGACCGCTTCCAGGAGGGCCGGGGCCGTGGACGTGGCCGTGGGCGCCAAAGGAGA
ATGGTGAACAGTAGAAGGTTGTGGAGTCCTAAAGACGAGCAAGCCTGGGTCCATGACAGA
TTTGATGAGATGGATCTGCGTGATTTTCATGGTGACAATCCAAAAAGAAAGCAGGGAGGT
GGTTTTAGAGGACGTGATGGTGGACAAGGTGGTAGAACTCGTGGCATTAGCCGTGGTAAC
TTCAGAGGCAACAGAGCTAGAACATACTATCATGATGGCAGCAAGAACTACAGCTATGTT
CCAAAGGAATCTCATGCATACCATGATAACACCAAGAATGCCCGTCATTCTTCATACTCT
AATGGGAAAAATAGAGTTCCAAAACCATCTCGTGATCACTATGATGATGTTAAAGGTTAT
GACACTGTCCCAAATGAATCTCGCACTTACTATGGTGATGCTAAGGGTCAAAAGAATGCA
CCAAGAGTAGTTCAAGGAAGAGGCTCCAAGCATTACCAACCACGCTTGAAAAATATCACT
GATGTATCTTCAGTGCAAAATACCAAATCTCTGACTCTTGAAGACACTTCGTCAAATGCA
AACTTGGGAAAAGACCGAACTCAAGGATCAAATTCGCGACTTGAACAAGTCCTTCCTACT
AAGCAGGCTGTTGCATCAAACTTGAATTCAGCTTCACCACCATTTTATCCTGCAAGGTCA
TCCAATCAAGAGTTCCCAGTTGTTCAAGGAGGGAATGCACAACTTAGTAATAACCTACTG
AGAGGGAAGGCCTTTGTACCATCAGTTGGACATGTTGAAGCTGCATTGAATGGCATGAAT
AAACCTTCACTGCTTCCAGCATCATCATCATCAAATGGTCCATTTCCTTTAGCCACTGAT
CAAGTCAATAGAGACTATGGGCAGCCTGCACATCCAATTGTTCAACAAAACTCAGTTCAA
TCCCCTACACAATCTGCACCCAGGATGCCTGCCCAGATGTTTGGTGCAAAATTCAGCAAT
AGCAGTAAAATATCACCAGCACAACCTACAACTATTCTGGGTGATGACACTGAAATTTCT
TCACCTAGTGGATCAAACAAATATGATTCTCGGTTAACAATTAAGGGGCAACCTGATGAC
CAAGGAACAGAGCATTCTTCGTTTCTCCGTGGTGGGGCTCATGTTCTTGGGGCTACAGGT
GCAATGGGCATTAAACTTGGTGATCAAAATTTCCATGGTACCCCAGCATTGCTGCCAGTT
ATGCAGTTTGGAGGTCCGCGACCAGTTGGGCGCGGTGTTCCTTCAATCGGTATGGCTCTG
CCAGGATTTGTGTCTCAACAACAACTTGGTCTCAATAATAATTCTGAGATGACCTGGCTA
CCAATATTGACTGGTGCCTCTGGAGCTCTAGGAGCACCTTATGGTTCCCCTTATATAGCC
ATGGATGGAAGTTATTACTCTCGACAATCTGAACAAGCATCTTCATCAGTTTCTATTAGA
GAACCTAGTGCAAATAATGCTTCTTCTCTGTTGAAGTCCCAAGAAATAACAGAGGTTGCA
AGTGATGAAATAACTCAACGCCAAAATAAGCCTCGTCGATACTCGGAGATGAACTTTGGC
CAATGA

Peptide Sequence

PEP ID

Zm00001d038815_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:6:165173445:165179189:-1 gene:Zm00001d038815 transcript:Zm00001d038815_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:CASC3/Barentsz eIF4AIII binding
Sequence

MADKEKPEAEEEEYESDLDDAPLSALWRRDAASDDEGEDEDEDGGTPLRRRKAGFDADSD
GQGAAEVYDEEGEEEYGGFEAEDGGVRGVAAEAVAGAGQEGGEAGDGEVEKAGEAAPQDE
EEDKKGNEPYAVPTTGAFYMHDDRFQEGRGRGRGRGRQRRMVNSRRLWSPKDEQAWVHDR
FDEMDLRDFHGDNPKRKQGGGFRGRDGGQGGRTRGISRGNFRGNRARTYYHDGSKNYSYV
PKESHAYHDNTKNARHSSYSNGKNRVPKPSRDHYDDVKGYDTVPNESRTYYGDAKGQKNA
PRVVQGRGSKHYQPRLKNITDVSSVQNTKSLTLEDTSSNANLGKDRTQGSNSRLEQVLPT
KQAVASNLNSASPPFYPARSSNQEFPVVQGGNAQLSNNLLRGKAFVPSVGHVEAALNGMN
KPSLLPASSSSNGPFPLATDQVNRDYGQPAHPIVQQNSVQSPTQSAPRMPAQMFGAKFSN
SSKISPAQPTTILGDDTEISSPSGSNKYDSRLTIKGQPDDQGTEHSSFLRGGAHVLGATG
AMGIKLGDQNFHGTPALLPVMQFGGPRPVGRGVPSIGMALPGFVSQQQLGLNNNSEMTWL
PILTGASGALGAPYGSPYIAMDGSYYSRQSEQASSSVSIREPSANNASSLLKSQEITEVA
SDEITQRQNKPRRYSEMNFGQ

Transcript Sequence

Transcript ID

Zm00001d038815_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:165173445:165179189:-1 gene:Zm00001d038815 gene_biotype:protein_coding transcript_biotype:protein_coding description:CASC3/Barentsz eIF4AIII binding
Sequence

GACTCCAGAGAGCCTCTCGAACCTTCCAAATTCCGTTGAAATCTTCCCCGAGCCCTAAGA
TTCTCTCGCCGGATTCGCCTGATCCGACCCGACACGCGATCTCTCGGCTCGCCGCAATGG
CCGACAAGGAGAAGCCGGAGGCTGAGGAGGAGGAGTACGAGAGCGACCTCGACGACGCGC
CCCTCTCCGCGTTGTGGCGCCGCGACGCTGCGAGCGACGACGAGGGCGAGGACGAGGATG
AGGACGGAGGGACGCCCTTGAGGCGGAGGAAAGCCGGATTCGATGCAGATTCCGACGGGC
AGGGCGCCGCCGAGGTTTACGACGAGGAAGGCGAGGAGGAGTACGGGGGGTTCGAAGCAG
AGGACGGCGGAGTGCGCGGGGTGGCTGCCGAAGCGGTTGCCGGTGCGGGGCAGGAGGGGG
GCGAGGCTGGGGATGGGGAAGTTGAAAAGGCGGGTGAGGCAGCGCCACAGGATGAAGAGG
AGGACAAGAAGGGGAACGAGCCCTACGCTGTTCCGACGACCGGCGCCTTCTACATGCACG
ACGACCGCTTCCAGGAGGGCCGGGGCCGTGGACGTGGCCGTGGGCGCCAAAGGAGAATGG
TGAACAGTAGAAGGTTGTGGAGTCCTAAAGACGAGCAAGCCTGGGTCCATGACAGATTTG
ATGAGATGGATCTGCGTGATTTTCATGGTGACAATCCAAAAAGAAAGCAGGGAGGTGGTT
TTAGAGGACGTGATGGTGGACAAGGTGGTAGAACTCGTGGCATTAGCCGTGGTAACTTCA
GAGGCAACAGAGCTAGAACATACTATCATGATGGCAGCAAGAACTACAGCTATGTTCCAA
AGGAATCTCATGCATACCATGATAACACCAAGAATGCCCGTCATTCTTCATACTCTAATG
GGAAAAATAGAGTTCCAAAACCATCTCGTGATCACTATGATGATGTTAAAGGTTATGACA
CTGTCCCAAATGAATCTCGCACTTACTATGGTGATGCTAAGGGTCAAAAGAATGCACCAA
GAGTAGTTCAAGGAAGAGGCTCCAAGCATTACCAACCACGCTTGAAAAATATCACTGATG
TATCTTCAGTGCAAAATACCAAATCTCTGACTCTTGAAGACACTTCGTCAAATGCAAACT
TGGGAAAAGACCGAACTCAAGGATCAAATTCGCGACTTGAACAAGTCCTTCCTACTAAGC
AGGCTGTTGCATCAAACTTGAATTCAGCTTCACCACCATTTTATCCTGCAAGGTCATCCA
ATCAAGAGTTCCCAGTTGTTCAAGGAGGGAATGCACAACTTAGTAATAACCTACTGAGAG
GGAAGGCCTTTGTACCATCAGTTGGACATGTTGAAGCTGCATTGAATGGCATGAATAAAC
CTTCACTGCTTCCAGCATCATCATCATCAAATGGTCCATTTCCTTTAGCCACTGATCAAG
TCAATAGAGACTATGGGCAGCCTGCACATCCAATTGTTCAACAAAACTCAGTTCAATCCC
CTACACAATCTGCACCCAGGATGCCTGCCCAGATGTTTGGTGCAAAATTCAGCAATAGCA
GTAAAATATCACCAGCACAACCTACAACTATTCTGGGTGATGACACTGAAATTTCTTCAC
CTAGTGGATCAAACAAATATGATTCTCGGTTAACAATTAAGGGGCAACCTGATGACCAAG
GAACAGAGCATTCTTCGTTTCTCCGTGGTGGGGCTCATGTTCTTGGGGCTACAGGTGCAA
TGGGCATTAAACTTGGTGATCAAAATTTCCATGGTACCCCAGCATTGCTGCCAGTTATGC
AGTTTGGAGGTCCGCGACCAGTTGGGCGCGGTGTTCCTTCAATCGGTATGGCTCTGCCAG
GATTTGTGTCTCAACAACAACTTGGTCTCAATAATAATTCTGAGATGACCTGGCTACCAA
TATTGACTGGTGCCTCTGGAGCTCTAGGAGCACCTTATGGTTCCCCTTATATAGCCATGG
ATGGAAGTTATTACTCTCGACAATCTGAACAAGCATCTTCATCAGTTTCTATTAGAGAAC
CTAGTGCAAATAATGCTTCTTCTCTGTTGAAGTCCCAAGAAATAACAGAGGTTGCAAGTG
ATGAAATAACTCAACGCCAAAATAAGCCTCGTCGATACTCGGAGATGAACTTTGGCCAAT
GAACATAGCTGTGACCAGTGAGGATTCATTGGAGCTTAGGACCCAAGTAAGACCTGTGCA
AGAGACCCAAGCCTTACTAAGTCCTTGCAACATCTCACTGTCTGATGTCTAGCACTTTCG
GCTATCTTGTAACTCCCAAAATGCCAGGCTTGACAGTTGAAGGTGTTGCAACCATATCAG
TATGATCATTTGCTGTGATTATTCTGAAGGGCTAGTGTTGTTACACTATGAGGTGAGATT
TACATGGTACTCCACTTCACCGCAATATCAGACGTCGTATCAGCATACTGCATATGGGGG
AGGTCTTGATGGAAATCGTGAGAGGTCTCCGTGCTGTAAAGCTCGTGTTCCATCGTACAT
CAGTCTGTGTACTTTTGGGTGTGCGCTTGCTTTGCTTCTGTGCCTCTGCCTTCAGCTCGG
TGGCACTCGGCTGACATGCATCCGTTATATTTACTTGTTATATCTGATCCGATGTATTGA
AGATGGTTAGTAGAGCATGATTTACGGTGGTGAATCTTGCTTTGGTCGTGTTGACAAATC
AGGGCCTTGCACGTAAAAGAACCGGTGCATCCGAGACGCCAGTGCACACAGCTCATGGCG
CTGCCGCAAAAGCCTTGTCTATTTGCAGAGTGATGTGTGTACCGTGGGCATTACAAAATA
ATTGCAGCCTCCTTTGGACGGCGGTAATATTAAGTTTAGCCTGCTTTTTTTCGAACGT