Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d038806_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:6:164808309:164812048:1 gene:Zm00001d038806 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:heat-shock protein 101 description:Chaperone protein ClpB1
Sequence	ATGAATCCGGACAACTTCACCCACAAGACGAACGAGGCGATCGTGGGGGCGCACGAGATT GCGGTGGAGGCCGGCCACGCGCAGCTCACGCCGCTGCACCTGGCCGCAGTGCTGGCTGCG GACAAGGGCGGCATCCTGCGGCAGGCCATCACGGGGGCGTCGGGGGGCGACGGAGCGGCC GGGGACTCGTTCGAGCGCGTGCTGAACAACTCGCTCAAGAAGCTGCCGTCGCAGTCCCCG CCGCCGGACTCCGTCCCGGCGTCCACGGCACTGATCAAGGTCATCCGCCGGGCGCAGTCC GCGCAGAAAAAACGCGGGGACTCTCACCTCGCCGTCGACCAGCTGCTGCTCGGCCTGCTC GAGGACTCGCAGATCTCCGACTGCCTCAAGGAGGCCGGCGTGTCCGCGGCGCGGGTGCGC GCCGAGCTTGAGAAGCTCCGCGGCGGGGAGGGGCGCCGCGTGGAGTCCGCGTCGGGGGAC ACTAACTTCCAGGCGCTCAAGACATACGGCCGGGACCTCGTCGAGCAGGCCGGGAAGCTT GATCCCGTCATCGGCCGCGACGAGGAGATCCGCCGCGTGGTGCGCATCCTCTCGCGCCGC ACTAAGAACAACCCCGTCCTCATCGGCGAGCCCGGCGTTGGCAAGACGGCCGTCGTGGAG GGCCTCGCGCAGCGCATCGTTCGCGGCGACGTGCCCAGTAACCTCCTCGACGTCCGCCTC ATCGCGCTCGACATGGGCGCGCTTGTCGCGGGCGCCAAGTACCGCGGCGAGTTCGAGGAG CGGCTCAAGGCCGTGCTCAAGGAGGTGGAAGAGGCCGAGGGGAAGGTCATTCTCTTCATC GACGAGATACACCTCGTCCTGGGCGCGGGCAGGACGGAGGGTTCCATGGACGCGGCCAAC CTGTTCAAGCCAATGCTGGCGAGGGGACAGCTCAGGTGCATCGGCGCCACCACGCTGGAG GAGTACCGCAAGTACGTGGAGAAGGACGCAGCGTTCGAGCGGCGGTTCCAGCAGGTGTTC GTCGCGGAGCCGAGCGTGCCCGATACCGTCAGCATTCTGAGGGGACTCAAGGAGAAGTAC GAGGGGCACCATGGCGTGAGGATCCAGGACCGCGCCCTCGTGGTCGCGGCACAGCTCTCC GCGAGGTACATCATGGGTCGGCACCTGCCTGACAAAGCCATAGACCTGGTGGACGAGGCC TGCGCCAATGTGAGGGTGCAGCTCGACAGCCAGCCGGAGGAGATTGATAACCTGGAGAGG AAGAGAATCCAGCTTGAGGTCGAGCTCCACGCGCTCGAGAAGGAGAAGGACAAGGCCAGT AAAGCCCGGCTGATTGAGGTCAGGAAGGAATTGGACGATCTGAGGGACAAGCTGCAGCCC CTGACCATGAAGTACAGGAAGGAGAAGGAGAGAATCGATGAGATCAGGAAGCTGAAGCAG CGCCGCGAGGAGCTCCAGTTCACCCTGCAGGAGGCCGAGCGCCGGATGGACCTGGCCCGT GTGGCCGATCTCAAGTACGGCGCCCTCCAGGAAATCGACGCCGCGATCTCCAAGCTGGAG AGCGAAACAGGGGAGAACCTGATGCTCACCGAAACCGTCGGCCCTGAACAAATTGCAGAG GTGGTGAGCCGTTGGACGGGTATTCCAGTGACCCGGCTTGGCCAGAACGACAAGGAGAGG CTGGTCGGCCTGGCTGACAGGCTTCACCAGAGGGTGGTCGGCCAGACAGAGGCTGTGAGC GCCGTCGCAGAGGCGGTGCTGAGGTCGAGGGCCGGTCTTGGCAGGCCACAACAGCCCACT GGCTCGTTCCTCTTCCTGGGTCCGACTGGCGTGGGGAAAACTGAGCTGGCCAAGGCCCTA GCCGAACAGCTGTTCGACGACGAGAACCTTCTTGTCCGCATCGACATGTCGGAGTACATG GAGCAGCACTCGGTTGCTCGCCTCATCGGAGCACCACCTGGCTACGTCGGCCATGAAGAG GGTGGGCAGCTGACTGAACAAGTGAGGAGGAGGCCGTACAGCGTGATCCTGTTCGACGAG GTCGAGAAGGCCCATGTCGCCGTGTTCAACACCCTGCTCCAGGTCCTCGACGACGGCAGG CTGACGGATGGGCAAGGCAGGACGGTGGACTTCAGGAACACCGTGATCATCATGACATCG AACCTCGGCGCCGAGCACCTCCTCGCTGGGATGGTGGGCAAGAACTCCATGAAGGTCGCT CGCGATCTGGTCATGCAGGAGGTGAGGAGGCACTTCCGCCCTGAGCTGCTGAACCGTCTC GACGAGATCGTGATCTTCGATCCTCTGTCCCACGAGCAGCTGAGGAAGGTCGCTCGCCTT CAGATGAAGGATGTGGCCGTCCGTCTTGCCGAAAGGGGCATCGCTCTGGCTGTGACCGAC GCCGCATTGGACATCATCTTGTCTCTCTCTTACGATCCGGTGTACGGCGCGCGGCCAATA AGGAGGTGGATCGAGAAGAGGGTGGTGACGCAGCTGTCGAAGATGCTGATCCAGGAGGAG ATCGACGAGAACTGCACGGTCTACATCGACGCCGCGCCCGGTAAGGACGAACTGGTCTAC AGGGTGGACCGGAGCGGCGGTCTGGTGAACGCTGAGACGGGGATGAAGTCGGACATCCTG ATCCAGGTCCCCACCAGCTCCACCAGGAGCGACGCTGCGCAGGCCGTCAAGAAGATGAGG ATCATGGAGGAGGACGAGGACGGCATGGACGAGGAGTAA

Peptide Sequence

PEP ID	Zm00001d038806_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:6:164808309:164812048:1 gene:Zm00001d038806 transcript:Zm00001d038806_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:heat-shock protein 101 description:Chaperone protein ClpB1
Sequence	MNPDNFTHKTNEAIVGAHEIAVEAGHAQLTPLHLAAVLAADKGGILRQAITGASGGDGAA GDSFERVLNNSLKKLPSQSPPPDSVPASTALIKVIRRAQSAQKKRGDSHLAVDQLLLGLL EDSQISDCLKEAGVSAARVRAELEKLRGGEGRRVESASGDTNFQALKTYGRDLVEQAGKL DPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLLDVRL IALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAAN LFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVFVAEPSVPDTVSILRGLKEKY EGHHGVRIQDRALVVAAQLSARYIMGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLER KRIQLEVELHALEKEKDKASKARLIEVRKELDDLRDKLQPLTMKYRKEKERIDEIRKLKQ RREELQFTLQEAERRMDLARVADLKYGALQEIDAAISKLESETGENLMLTETVGPEQIAE VVSRWTGIPVTRLGQNDKERLVGLADRLHQRVVGQTEAVSAVAEAVLRSRAGLGRPQQPT GSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVARLIGAPPGYVGHEE GGQLTEQVRRRPYSVILFDEVEKAHVAVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTS NLGAEHLLAGMVGKNSMKVARDLVMQEVRRHFRPELLNRLDEIVIFDPLSHEQLRKVARL QMKDVAVRLAERGIALAVTDAALDIILSLSYDPVYGARPIRRWIEKRVVTQLSKMLIQEE IDENCTVYIDAAPGKDELVYRVDRSGGLVNAETGMKSDILIQVPTSSTRSDAAQAVKKMR IMEEDEDGMDEE

Transcript Sequence

Transcript ID	Zm00001d038806_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:6:164808309:164812048:1 gene:Zm00001d038806 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:heat-shock protein 101 description:Chaperone protein ClpB1
Sequence	GCACACAGTTCAACCAGAAAAACTAGCCGAAGCAAACCCATTCCACAAGCACCTGGTGGG ATCATCTCATCATCAGAAACAAAGAGAGAGATTCCGTGCCCACTTGTTGTAGTAGATTGT GAGGATTGAGGAGTAGCAAAGAGAAGCAGCCATGAATCCGGACAACTTCACCCACAAGAC GAACGAGGCGATCGTGGGGGCGCACGAGATTGCGGTGGAGGCCGGCCACGCGCAGCTCAC GCCGCTGCACCTGGCCGCAGTGCTGGCTGCGGACAAGGGCGGCATCCTGCGGCAGGCCAT CACGGGGGCGTCGGGGGGCGACGGAGCGGCCGGGGACTCGTTCGAGCGCGTGCTGAACAA CTCGCTCAAGAAGCTGCCGTCGCAGTCCCCGCCGCCGGACTCCGTCCCGGCGTCCACGGC ACTGATCAAGGTCATCCGCCGGGCGCAGTCCGCGCAGAAAAAACGCGGGGACTCTCACCT CGCCGTCGACCAGCTGCTGCTCGGCCTGCTCGAGGACTCGCAGATCTCCGACTGCCTCAA GGAGGCCGGCGTGTCCGCGGCGCGGGTGCGCGCCGAGCTTGAGAAGCTCCGCGGCGGGGA GGGGCGCCGCGTGGAGTCCGCGTCGGGGGACACTAACTTCCAGGCGCTCAAGACATACGG CCGGGACCTCGTCGAGCAGGCCGGGAAGCTTGATCCCGTCATCGGCCGCGACGAGGAGAT CCGCCGCGTGGTGCGCATCCTCTCGCGCCGCACTAAGAACAACCCCGTCCTCATCGGCGA GCCCGGCGTTGGCAAGACGGCCGTCGTGGAGGGCCTCGCGCAGCGCATCGTTCGCGGCGA CGTGCCCAGTAACCTCCTCGACGTCCGCCTCATCGCGCTCGACATGGGCGCGCTTGTCGC GGGCGCCAAGTACCGCGGCGAGTTCGAGGAGCGGCTCAAGGCCGTGCTCAAGGAGGTGGA AGAGGCCGAGGGGAAGGTCATTCTCTTCATCGACGAGATACACCTCGTCCTGGGCGCGGG CAGGACGGAGGGTTCCATGGACGCGGCCAACCTGTTCAAGCCAATGCTGGCGAGGGGACA GCTCAGGTGCATCGGCGCCACCACGCTGGAGGAGTACCGCAAGTACGTGGAGAAGGACGC AGCGTTCGAGCGGCGGTTCCAGCAGGTGTTCGTCGCGGAGCCGAGCGTGCCCGATACCGT CAGCATTCTGAGGGGACTCAAGGAGAAGTACGAGGGGCACCATGGCGTGAGGATCCAGGA CCGCGCCCTCGTGGTCGCGGCACAGCTCTCCGCGAGGTACATCATGGGTCGGCACCTGCC TGACAAAGCCATAGACCTGGTGGACGAGGCCTGCGCCAATGTGAGGGTGCAGCTCGACAG CCAGCCGGAGGAGATTGATAACCTGGAGAGGAAGAGAATCCAGCTTGAGGTCGAGCTCCA CGCGCTCGAGAAGGAGAAGGACAAGGCCAGTAAAGCCCGGCTGATTGAGGTCAGGAAGGA ATTGGACGATCTGAGGGACAAGCTGCAGCCCCTGACCATGAAGTACAGGAAGGAGAAGGA GAGAATCGATGAGATCAGGAAGCTGAAGCAGCGCCGCGAGGAGCTCCAGTTCACCCTGCA GGAGGCCGAGCGCCGGATGGACCTGGCCCGTGTGGCCGATCTCAAGTACGGCGCCCTCCA GGAAATCGACGCCGCGATCTCCAAGCTGGAGAGCGAAACAGGGGAGAACCTGATGCTCAC CGAAACCGTCGGCCCTGAACAAATTGCAGAGGTGGTGAGCCGTTGGACGGGTATTCCAGT GACCCGGCTTGGCCAGAACGACAAGGAGAGGCTGGTCGGCCTGGCTGACAGGCTTCACCA GAGGGTGGTCGGCCAGACAGAGGCTGTGAGCGCCGTCGCAGAGGCGGTGCTGAGGTCGAG GGCCGGTCTTGGCAGGCCACAACAGCCCACTGGCTCGTTCCTCTTCCTGGGTCCGACTGG CGTGGGGAAAACTGAGCTGGCCAAGGCCCTAGCCGAACAGCTGTTCGACGACGAGAACCT TCTTGTCCGCATCGACATGTCGGAGTACATGGAGCAGCACTCGGTTGCTCGCCTCATCGG AGCACCACCTGGCTACGTCGGCCATGAAGAGGGTGGGCAGCTGACTGAACAAGTGAGGAG GAGGCCGTACAGCGTGATCCTGTTCGACGAGGTCGAGAAGGCCCATGTCGCCGTGTTCAA CACCCTGCTCCAGGTCCTCGACGACGGCAGGCTGACGGATGGGCAAGGCAGGACGGTGGA CTTCAGGAACACCGTGATCATCATGACATCGAACCTCGGCGCCGAGCACCTCCTCGCTGG GATGGTGGGCAAGAACTCCATGAAGGTCGCTCGCGATCTGGTCATGCAGGAGGTGAGGAG GCACTTCCGCCCTGAGCTGCTGAACCGTCTCGACGAGATCGTGATCTTCGATCCTCTGTC CCACGAGCAGCTGAGGAAGGTCGCTCGCCTTCAGATGAAGGATGTGGCCGTCCGTCTTGC CGAAAGGGGCATCGCTCTGGCTGTGACCGACGCCGCATTGGACATCATCTTGTCTCTCTC TTACGATCCGGTGTACGGCGCGCGGCCAATAAGGAGGTGGATCGAGAAGAGGGTGGTGAC GCAGCTGTCGAAGATGCTGATCCAGGAGGAGATCGACGAGAACTGCACGGTCTACATCGA CGCCGCGCCCGGTAAGGACGAACTGGTCTACAGGGTGGACCGGAGCGGCGGTCTGGTGAA CGCTGAGACGGGGATGAAGTCGGACATCCTGATCCAGGTCCCCACCAGCTCCACCAGGAG CGACGCTGCGCAGGCCGTCAAGAAGATGAGGATCATGGAGGAGGACGAGGACGGCATGGA CGAGGAGTAAAAGGCGGGCCGGAGGACGCGGAGCTGCGCCCAGGCCGCAGGTCTGGCGCC GGCATCATCGAGTGTCTTTTGAATAAGCGTGTAGATAAGCCCGTGAATGTGGAAACGAGG ATGAGATGATGTTCTTGTAACGCTGCTGTTTGTCAAGCATGGACGAATGCTCTCATATCA TCATATGGTGTCAAAGTGACAAAGTCTCTCAATCGATGTCTTGATGTCATTATTTTTATC TCCCTGAATGTTTTTACATGTTTTCCTCTATTCATTGTATCCTTTATGCATACACGAAGG GAGAACTTTCGGCTACCTGTTTGGTTCTACCATAATCCATATAGATTTTCATATTTTC