Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d038777_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:6:164213976:164221039:-1 gene:Zm00001d038777 gene_biotype:protein_coding transcript_biotype:protein_coding description:U3 small nucleolar ribonucleoprotein mpp10 isoform 2
Sequence

ATGGTGGACTTGGACGAGCCGCTCGATGCGGCTGTAACTGCGGAGAAGGGCAAGGCGGCG
CTACAACGGTTACTTGAGGCTGACCCTGCACTCTTCCTCTCCCCCTCTGCGGACCTTGCT
GCTGCCGCCCGAGCGGCCTCGCAGCACATCTACTCCTCACTGATTTGGTCCCAGATCGAG
CTGCTTGCCCGCCCACTCCTCCCTCAGCTGGGCCGCCAGCTCCGTCGCATCGTGCAGCAA
CCCTCCTCGCAACAGCCTCCTTTGAAAATGCCTGCTGTCGCGGAGGGTGAGCAGTTGGAG
GAGGATGGAGAAAGTAGCGATTCAGAGGAATTGAAGAATGCGGAGGAGTTGGAGGGGACA
GAGGATGGGGAGGAGTTGGAGGGGACAGACGATGAGGAGGAAATGGGTGACAAGGAGGAG
GAAGAAGCGGAGCTGGATGGGAGAGGAGGGAATGGTGTGGAGGATGAATTCCTGAAGATA
GATGAATTGACGGAGTTCCTGGAGAAGGGTGAAGAAGAGGAGTATGGTGATGGAGCCAAA
CGGAGAGAGAAGTCAGTGAAAAACTGGATGGTTGAGAGTGACACTGAGGATGAAGATGAG
GATCAATTGGATTTAGAAGATTTTGAGGATGATGACGAGGATGGTGAAGCAGGCGGTGGA
GATATTCTGTATGAAGATTTTTTTGAGAATGGACACAACAAGCAAGCTAAGAAGAGAGAT
GGTTCCACAAAGAAAGTTCAATTCAAGGATGAAGCACATGAAGTTGAACTCCATGACAGT
GAGAATGATGATGGAAATGATGAACAAGAACATGGTCTCTCAACTCACGAAAAGGAGCGT
CTGAAGATGCGTACTAAAATAGAGCAAATGGAGAAAGCTAATCTTGAACCCAGCACGTGG
ACCATGCAGGGAGAGGTTACTGCTTCTAGGAGGCCCAAAAACAGTGCCCTAGAAGTGGAC
CTTGATTTTGAGCACAATGTAAGACCTGCCCCTGTAATAACCGAGGAAGTGACAGCTTCC
CTTGAAGAAATGATAAAGAAAAGAATCGCAGAGAGTCATTTTGATGATGTTGAGAAGCCG
TCTCTCTTGCCATCTAAAGCTCCAAAGGAGCACAAGGAACTGGATGAAACTAAGAGCAAG
AAGGGTCTTGCTGAACTGTATGAGGATGACTATGCACAAAAAGCAGGCATTGCACCTGCC
CCACTTTCTATTTCAGATGAACTAAAGGAAGAGGCAAATACTTTATTTAAGAGGATATGT
TTGAAATTGGATGCGCTATCGCATTTCCACTTTGCTCCAAAGCCAGTCATTGAGGATATG
TCTGTGCAAGCAAATGTGCCTGCTTTAGCCATGGAAGAGATTGCACCTGTAGCTGTTTCG
GATGCTGCAATGCTTGCCCCTGAAGAGATATTTGAAGGAAAAGGTGATGTTAAGGAAGAG
GGGGAACTTACACAGGCTGAGCGCAAGAGAAGAAGAGCTAACAAGAAAAGGAGATATGCA
GCATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGCAGAAAGATTAA

Peptide Sequence

PEP ID

Zm00001d038777_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:6:164213976:164221039:-1 gene:Zm00001d038777 transcript:Zm00001d038777_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:U3 small nucleolar ribonucleoprotein mpp10 isoform 2
Sequence

MVDLDEPLDAAVTAEKGKAALQRLLEADPALFLSPSADLAAAARAASQHIYSSLIWSQIE
LLARPLLPQLGRQLRRIVQQPSSQQPPLKMPAVAEGEQLEEDGESSDSEELKNAEELEGT
EDGEELEGTDDEEEMGDKEEEEAELDGRGGNGVEDEFLKIDELTEFLEKGEEEEYGDGAK
RREKSVKNWMVESDTEDEDEDQLDLEDFEDDDEDGEAGGGDILYEDFFENGHNKQAKKRD
GSTKKVQFKDEAHEVELHDSENDDGNDEQEHGLSTHEKERLKMRTKIEQMEKANLEPSTW
TMQGEVTASRRPKNSALEVDLDFEHNVRPAPVITEEVTASLEEMIKKRIAESHFDDVEKP
SLLPSKAPKEHKELDETKSKKGLAELYEDDYAQKAGIAPAPLSISDELKEEANTLFKRIC
LKLDALSHFHFAPKPVIEDMSVQANVPALAMEEIAPVAVSDAAMLAPEEIFEGKGDVKEE
GELTQAERKRRRANKKRRYAASHKERTAPAKLQKD

Transcript Sequence

Transcript ID

Zm00001d038777_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:164213976:164221039:-1 gene:Zm00001d038777 gene_biotype:protein_coding transcript_biotype:protein_coding description:U3 small nucleolar ribonucleoprotein mpp10 isoform 2
Sequence

GAAGCGTCGCGCCGCCGCCCATCACGGACATCGGACAGGAGAAGAGAAGCGGGAGCACCG
GAGCAGGCACCACCGCCGAGGCGACGAGGTCGCCGTGCTCCCCATCCGCTGAGGTAGCTG
CACTCCGGCCTCCGCGGCTGCCGGCTCCGCCAACGCCCAGTCCCAAGGCGAGCAGGCACC
CACGGCAGCACGGCTGTCGCGGTAGTATTTAAGGAACAGGGAAACATCTGCTACCGCCCA
ATCTTTCCCCTTCCCGGACTGCTCGCTGGACGCCGAGGACGTACGTGTCCGCCGTCTGTT
TCCACTCACCGTGTGATACTGTGATGGTGGACTTGGACGAGCCGCTCGATGCGGCTGTAA
CTGCGGAGAAGGGCAAGGCGGCGCTACAACGGTTACTTGAGGCTGACCCTGCACTCTTCC
TCTCCCCCTCTGCGGACCTTGCTGCTGCCGCCCGAGCGGCCTCGCAGCACATCTACTCCT
CACTGATTTGGTCCCAGATCGAGCTGCTTGCCCGCCCACTCCTCCCTCAGCTGGGCCGCC
AGCTCCGTCGCATCGTGCAGCAACCCTCCTCGCAACAGCCTCCTTTGAAAATGCCTGCTG
TCGCGGAGGGTGAGCAGTTGGAGGAGGATGGAGAAAGTAGCGATTCAGAGGAATTGAAGA
ATGCGGAGGAGTTGGAGGGGACAGAGGATGGGGAGGAGTTGGAGGGGACAGACGATGAGG
AGGAAATGGGTGACAAGGAGGAGGAAGAAGCGGAGCTGGATGGGAGAGGAGGGAATGGTG
TGGAGGATGAATTCCTGAAGATAGATGAATTGACGGAGTTCCTGGAGAAGGGTGAAGAAG
AGGAGTATGGTGATGGAGCCAAACGGAGAGAGAAGTCAGTGAAAAACTGGATGGTTGAGA
GTGACACTGAGGATGAAGATGAGGATCAATTGGATTTAGAAGATTTTGAGGATGATGACG
AGGATGGTGAAGCAGGCGGTGGAGATATTCTGTATGAAGATTTTTTTGAGAATGGACACA
ACAAGCAAGCTAAGAAGAGAGATGGTTCCACAAAGAAAGTTCAATTCAAGGATGAAGCAC
ATGAAGTTGAACTCCATGACAGTGAGAATGATGATGGAAATGATGAACAAGAACATGGTC
TCTCAACTCACGAAAAGGAGCGTCTGAAGATGCGTACTAAAATAGAGCAAATGGAGAAAG
CTAATCTTGAACCCAGCACGTGGACCATGCAGGGAGAGGTTACTGCTTCTAGGAGGCCCA
AAAACAGTGCCCTAGAAGTGGACCTTGATTTTGAGCACAATGTAAGACCTGCCCCTGTAA
TAACCGAGGAAGTGACAGCTTCCCTTGAAGAAATGATAAAGAAAAGAATCGCAGAGAGTC
ATTTTGATGATGTTGAGAAGCCGTCTCTCTTGCCATCTAAAGCTCCAAAGGAGCACAAGG
AACTGGATGAAACTAAGAGCAAGAAGGGTCTTGCTGAACTGTATGAGGATGACTATGCAC
AAAAAGCAGGCATTGCACCTGCCCCACTTTCTATTTCAGATGAACTAAAGGAAGAGGCAA
ATACTTTATTTAAGAGGATATGTTTGAAATTGGATGCGCTATCGCATTTCCACTTTGCTC
CAAAGCCAGTCATTGAGGATATGTCTGTGCAAGCAAATGTGCCTGCTTTAGCCATGGAAG
AGATTGCACCTGTAGCTGTTTCGGATGCTGCAATGCTTGCCCCTGAAGAGATATTTGAAG
GAAAAGGTGATGTTAAGGAAGAGGGGGAACTTACACAGGCTGAGCGCAAGAGAAGAAGAG
CTAACAAGAAAAGGAGATATGCAGCATCCCATAAGGAGAGGACAGCGCCAGCCAAGTTGC
AGAAAGATTAAACTCAATGTTTTTTTCTCACTAGTTTCTAAATGGTACAAGAGCGATAAA
CTGGCAATACATATTTTCCAAATTTTGTATTGTACCCTCTGCTAGTAGCTTTTACATGAA
CAGTAAAATGTGACCATTTATATTTCTACAGAAGCACACAAGTTCGAGAGTTT