Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d038687_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:6:162598342:162601795:-1 gene:Zm00001d038687 gene_biotype:protein_coding transcript_biotype:protein_coding description:Beta-arabinofuranosyltransferase RAY1
Sequence

ATGCTGCTCCCTCAGCACCACCACCACCGGGAGCCCCCGCGCCGCGGAGGGCGCCGGCCG
CTCCGTGGCGGCGTCGCCGGCCTTGCCTCGTCTCTCGCGGGGTGCCTACTCCTCGGTCTC
GTCGCGACCGCGGCGATGCTCTGCCTCTCCTCCCCGCCCTCCCGCGCGCGCCAGCATGGT
GGCAGCCGCGGGATCGTGCCCGCCGGCGGCAGTGGAGCGACACCGAGGGTCACGATCTTC
TCCGCGCCGCGGCCGCCGCCGGAGGGCTCGCCCGCGCGGCAGGAGCTGGCGGCGCGCTCC
TGGCTGGCGCTCCCGTGGAACGTCAGCGTCGTGCTCCTAGGCGCCGGCCCCGAGTCCGTC
GCGCTCGCCGCGCGGCTCGGGCACCGCGTCACCGCCGATGCCGCCATCGATTTTGCGTTC
ACGGGGACACCGTTCTTCCACTCAATGGTCGCGAGAGCACAGGCTGCCGCCGACACCGAC
GTTTGCGTCCTCGTCGACGCCGAGATCGTCCTTCTTCCCGAAATTGTCAACGCGTTGGAT
CGTTTCAGCAAGGTTGATGGCGACTGGTTCCTCGTTTCTCTGTCACGTAACGTCACCGAT
CCCCGTTACCAGCTCGCTGACAGTGGAAGCCATTGGGTACAAGCAGACGGCAAAGAAGTG
AGCTTTACGGAGCTGCAGGAGATTCCAGCTGAGTGGTCATCATCGGAGGGCTCTGACAGA
GGGCTGATTATGGCGTGGAACAATCCAAGCAGTGCTTTACACGCAGGAGTTCTGCCTTCT
TTTCTGTATGGAAGAGGAGCACAGAATTGGTGGCTGGCTCACGAGGTTCTGTCCTCTGAG
ATGAGGCTTTTCTTTGATGCAAGCAGTCTGGTTCTTGGACTGTATCCTGAGAGCATTAGC
GCCATGCAGCATGTCATGGCCTCGAGTAAGAATGGCAGGTTACCTTCTGTATCCTGGGAG
TACGGCGTCAATCACCATCTTGCTGCGGTTTATGGCTCGTATTGCTGTCGATCACCAGCG
AGACGCTTTCCTATGCTGCATAGAGTGGTAAAGCAATCTGAAGATTATATGCTCAGCAAA
GTTGACACACTCGTATCATCAGATTTCTTCATCAGTAAACAAGGAAATGCCCATGGAGTA
GATAGCCTACGGAAGAAACAAAACGTTTCTCTATCTGGATATCTACACGGTTGTTCTTCC
GAGACCTCAGCGCCTGACCTTCCATATTCTTTGAGCATGCTACTCGATCTTGTCGCTGAT
GAGAATGGTTCCGTTGTCCTTGGCGTGGCTGGAAAAAGCTACAGGGACATGCTCATGAGT
TGGGCATGCCGCCTGCGTCGTCTTAGAGTTACCAATTTCTTAGTATGTGCCTTAGACCAT
GAGACATATGAGTTCTCAATCTTACAGGGGTTGCCAGTTTTCAGAGACCCATTGTCACCA
ACAAATGTCAGCTTTGACGACTGCCACTTTGGAACGAAGTGTTTTCAACAAGTGACAAAA
GTGAAGTCGCGGATTGTCCTTGAGATACTAAGACTGGGATACAATGTGCTGCTGAGTGAC
GTTGATGTTTATTGGTTTGGCAATCCGATGCCACTCCTGTACTCTCTTGGTCTTGCTACA
TTCGGAGCACAATCTGATGAATACAATGAGACAGGACCAATAAACTTGCCACGCCGACTG
AACTCAGGATTCTACTTTGCTCGCTCAGACAACGCCACCATCATTGCAATGGAGATGATA
GTAAAACACGCAGCCAGTTCAGGCCTATCTGAGCAGCCGAGTTTCTACGATGTCTTGTGT
GGGGAGAACGGAACAAACCGGATCGGTGAAGACAGATGCTTGGAGCCCAACACGAACCTG
ACCGTTGTGTTCTTGGATCGGGACTTGTTCCCCAATGGTGCCTACAAGGGTCTATGGGAG
AAGCGTGATGTACGAGCAACCTGCAAAGAGCTTGGCTGTTTCATCATTCACAACAACTGG
ATAAACAAGAGGAGAAAAAAGGTCCACCGGCAAATGGTATCTGGGCTGTGGGACTACGAT
CCTACCTCTAGGCAGTGCTTGCAGGAATGGAGTGCTCAGAATGATGGGGCAATTCCATTT
GTTTGA

Peptide Sequence

PEP ID

Zm00001d038687_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:6:162598342:162601795:-1 gene:Zm00001d038687 transcript:Zm00001d038687_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Beta-arabinofuranosyltransferase RAY1
Sequence

MLLPQHHHHREPPRRGGRRPLRGGVAGLASSLAGCLLLGLVATAAMLCLSSPPSRARQHG
GSRGIVPAGGSGATPRVTIFSAPRPPPEGSPARQELAARSWLALPWNVSVVLLGAGPESV
ALAARLGHRVTADAAIDFAFTGTPFFHSMVARAQAAADTDVCVLVDAEIVLLPEIVNALD
RFSKVDGDWFLVSLSRNVTDPRYQLADSGSHWVQADGKEVSFTELQEIPAEWSSSEGSDR
GLIMAWNNPSSALHAGVLPSFLYGRGAQNWWLAHEVLSSEMRLFFDASSLVLGLYPESIS
AMQHVMASSKNGRLPSVSWEYGVNHHLAAVYGSYCCRSPARRFPMLHRVVKQSEDYMLSK
VDTLVSSDFFISKQGNAHGVDSLRKKQNVSLSGYLHGCSSETSAPDLPYSLSMLLDLVAD
ENGSVVLGVAGKSYRDMLMSWACRLRRLRVTNFLVCALDHETYEFSILQGLPVFRDPLSP
TNVSFDDCHFGTKCFQQVTKVKSRIVLEILRLGYNVLLSDVDVYWFGNPMPLLYSLGLAT
FGAQSDEYNETGPINLPRRLNSGFYFARSDNATIIAMEMIVKHAASSGLSEQPSFYDVLC
GENGTNRIGEDRCLEPNTNLTVVFLDRDLFPNGAYKGLWEKRDVRATCKELGCFIIHNNW
INKRRKKVHRQMVSGLWDYDPTSRQCLQEWSAQNDGAIPFV

Transcript Sequence

Transcript ID

Zm00001d038687_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:162598342:162601795:-1 gene:Zm00001d038687 gene_biotype:protein_coding transcript_biotype:protein_coding description:Beta-arabinofuranosyltransferase RAY1
Sequence

GTCGGTGAGGTACCGATTGTTCGTCGTCTCCAAGTCTCGACTGCGCTCCATCTCCTCTCT
TCCCCAGCTCTGCCCCCTCCATCGATGCCGTTGTCGACGCCAAACCGAGCTTGCCTCACC
ACGTCGGACTGCGCTCCATCTCCATCTCCTCTTTTCCCCAGCCCCGGCCCCTCCGTCGAT
GCCGTCGCTGGCGCCGCCGAATCGAGCTTGCCTCGCTGGACTGCGCTCCATCTCCTCTCT
TCCCTAGCCCTGGCCCCTCCGTCAATGCCGTCACCAGTGGCTACCCGAGCTTGCCTCACC
GTCCCCGCTGTCGTCCCGCGAATCCACGAACCACGTCTTCCACTAGCTCGATTTGGCGCG
AAGCAATTGGATAGCGAACGCACTGTGCAACACAAGCAACAGAGTGCGTGAGCATCGTCC
GTAATTTTAGCGTATTCTTTACAGTTCATTGCTGGAGAATATAGCGGAAATTTTTTTATC
ACTACATTTAGCATATAGTAGGATATACAACCTTAACCGCCGGGAAGGGCTGGAGCCTGG
AACTGGAGGCCGTCGTGACCTCCTGGACGAGCGGACGGCCAGGAGGGAGGCGTCACGTGG
GCTTCATCGTCGGCGCTCGTGCCGCCGTGCATTCAGGCGGGCCGCGGCGTCAGTGCCTCT
TTATCACACCGCTTTGCTTTCGATTAACGTTTGCGGTTTTGTTTGCGTTTTACTCCCCAC
TCAGGACCTCATTTCAATGACGGGTAGGCCCCACCAACCAGCAAAACAAAACTACTCCAA
TGCTTCCTCAGCTCGCCCGCCGTGGCGCGCCACCACATGCTGCTCCCTCAGCACCACCAC
CACCGGGAGCCCCCGCGCCGCGGAGGGCGCCGGCCGCTCCGTGGCGGCGTCGCCGGCCTT
GCCTCGTCTCTCGCGGGGTGCCTACTCCTCGGTCTCGTCGCGACCGCGGCGATGCTCTGC
CTCTCCTCCCCGCCCTCCCGCGCGCGCCAGCATGGTGGCAGCCGCGGGATCGTGCCCGCC
GGCGGCAGTGGAGCGACACCGAGGGTCACGATCTTCTCCGCGCCGCGGCCGCCGCCGGAG
GGCTCGCCCGCGCGGCAGGAGCTGGCGGCGCGCTCCTGGCTGGCGCTCCCGTGGAACGTC
AGCGTCGTGCTCCTAGGCGCCGGCCCCGAGTCCGTCGCGCTCGCCGCGCGGCTCGGGCAC
CGCGTCACCGCCGATGCCGCCATCGATTTTGCGTTCACGGGGACACCGTTCTTCCACTCA
ATGGTCGCGAGAGCACAGGCTGCCGCCGACACCGACGTTTGCGTCCTCGTCGACGCCGAG
ATCGTCCTTCTTCCCGAAATTGTCAACGCGTTGGATCGTTTCAGCAAGGTTGATGGCGAC
TGGTTCCTCGTTTCTCTGTCACGTAACGTCACCGATCCCCGTTACCAGCTCGCTGACAGT
GGAAGCCATTGGGTACAAGCAGACGGCAAAGAAGTGAGCTTTACGGAGCTGCAGGAGATT
CCAGCTGAGTGGTCATCATCGGAGGGCTCTGACAGAGGGCTGATTATGGCGTGGAACAAT
CCAAGCAGTGCTTTACACGCAGGAGTTCTGCCTTCTTTTCTGTATGGAAGAGGAGCACAG
AATTGGTGGCTGGCTCACGAGGTTCTGTCCTCTGAGATGAGGCTTTTCTTTGATGCAAGC
AGTCTGGTTCTTGGACTGTATCCTGAGAGCATTAGCGCCATGCAGCATGTCATGGCCTCG
AGTAAGAATGGCAGGTTACCTTCTGTATCCTGGGAGTACGGCGTCAATCACCATCTTGCT
GCGGTTTATGGCTCGTATTGCTGTCGATCACCAGCGAGACGCTTTCCTATGCTGCATAGA
GTGGTAAAGCAATCTGAAGATTATATGCTCAGCAAAGTTGACACACTCGTATCATCAGAT
TTCTTCATCAGTAAACAAGGAAATGCCCATGGAGTAGATAGCCTACGGAAGAAACAAAAC
GTTTCTCTATCTGGATATCTACACGGTTGTTCTTCCGAGACCTCAGCGCCTGACCTTCCA
TATTCTTTGAGCATGCTACTCGATCTTGTCGCTGATGAGAATGGTTCCGTTGTCCTTGGC
GTGGCTGGAAAAAGCTACAGGGACATGCTCATGAGTTGGGCATGCCGCCTGCGTCGTCTT
AGAGTTACCAATTTCTTAGTATGTGCCTTAGACCATGAGACATATGAGTTCTCAATCTTA
CAGGGGTTGCCAGTTTTCAGAGACCCATTGTCACCAACAAATGTCAGCTTTGACGACTGC
CACTTTGGAACGAAGTGTTTTCAACAAGTGACAAAAGTGAAGTCGCGGATTGTCCTTGAG
ATACTAAGACTGGGATACAATGTGCTGCTGAGTGACGTTGATGTTTATTGGTTTGGCAAT
CCGATGCCACTCCTGTACTCTCTTGGTCTTGCTACATTCGGAGCACAATCTGATGAATAC
AATGAGACAGGACCAATAAACTTGCCACGCCGACTGAACTCAGGATTCTACTTTGCTCGC
TCAGACAACGCCACCATCATTGCAATGGAGATGATAGTAAAACACGCAGCCAGTTCAGGC
CTATCTGAGCAGCCGAGTTTCTACGATGTCTTGTGTGGGGAGAACGGAACAAACCGGATC
GGTGAAGACAGATGCTTGGAGCCCAACACGAACCTGACCGTTGTGTTCTTGGATCGGGAC
TTGTTCCCCAATGGTGCCTACAAGGGTCTATGGGAGAAGCGTGATGTACGAGCAACCTGC
AAAGAGCTTGGCTGTTTCATCATTCACAACAACTGGATAAACAAGAGGAGAAAAAAGGTC
CACCGGCAAATGGTATCTGGGCTGTGGGACTACGATCCTACCTCTAGGCAGTGCTTGCAG
GAATGGAGTGCTCAGAATGATGGGGCAATTCCATTTGTTTGAGGACACTGACAGTTAGTA
GACTGGTTAACTTACCTCATCCCCTGTTATTAAATTCGAATATTATGTGAGGGATTGATC