Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d038676_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:6:162387696:162391572:1 gene:Zm00001d038676 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable xyloglucan glycosyltransferase 12
Sequence

ATGGCGCCGTCGTGGTGGGGGCGGGACGCGAGGGCCAACGGCGTCGTTGGCGGCGGCACG
CCCGTGGTGGTCAGGATGGAGAACCCCAACTGGTGCATCTCCGAGGTCGCCGCCGCGGCG
TCGGAGGTGGACGCGCCGCCGCCGGCGGCGGCCGGGGGCGGCAAGGCCGGGCGGCGGGGC
AAGAACGCGCGCCAGATCACGTGGGTGCTGCTCCTCAGGGCGCACCGCGCCGCGGGCCGC
CTCACGGGGGCGGCCTCCGCCGCGCTCTCCGTGGCCGCCGCCGCGCGCCGCAGGGTGGCG
GCGGGCCGGACCGACTCCGACGCCGACGCCGACGCCGCCCCGGGCGAGAGCGCGGCGCTC
CGGGCGCGCTCCTACGGCTGCATCCGCCTCTTCCTCGCCCTCTCGCTGCTGCTGCTCGCC
GTCGAGGTCGCGGCCTACCTCCGGGGCTGGCACCTCGAGGTGGACGTGGGCGCCGGGATC
CTCGCCGTCGACGGCCTCTTCGCCGCCGCCTACGCGGCCTGGATGCGCGCCCGCCTCGAC
TACCTCGCGCCGCCGCTGCAGTTCCTAACCAACGCCTGCGTCCTCCTCTTCCTGGTCCAG
AGCGTCGACCGCCTCGTGCTCTGCCTCGGCTGCTTCTGGATCAAGCTCAAGGGCGTCAGG
CCCGTGCCGCCGCTGCCCGCCGACAAGGAGGACGTCGAGGCCGGTCCCGACGGCGTCCCC
ATGGTGCTCGTGCAGATGCCCATGTGCAATGAGAGAGAGGTGTACCAGCAATCCATCGGT
GCGGTTTGCAGCCTGGACTGGCCAAGGTCAAATTTCCTGGTCCAGGTGTTGGATGACTCT
GATGATGCTACCACTTCGGCACTTATCAAGGAGGAGGTGGAGAAATGGCAGCGAGAGGGT
GTGCGCATAGTATACCGGCACCGGGTGATCCGGGATGGCTACAAGGCTGGAAACCTGAAA
TCAGCCATGAACTGCAGTTACGTGAAAGACTATGAGTTCGTTGTCATCTTCGATGCTGAT
TTCCAACCACAGGCGGACTTCCTGAAGCGCACCGTGCCCCATTTCAAGGGAAAGGATGAC
GTCGGGTTGGTTCAGGCGAGATGGTCGTTCGTAAACAAGGATGAGAACTTGCTGACCAGG
CTTCAGAACATAAATCTTTGCTTCCACTTCGAGGTGGAGCAGCAGGTGAACGGGGCGTTT
CTCAACTTCTTCGGGTTCAATGGCACCGCGGGAGTCTGGAGAATCAAGGCGCTTGAGGAG
TCTGGAGGATGGATGGAGAGGACGACGGTGGAGGACATGGACATAGCTGTTCGAGCGCAC
CTCAAAGGGTGGAAGTTTCTCTTTCTAAACGATGTCGAGTGTCAGTGTGAATTGCCAGAA
TCGTATGAAGCGTACAGAAAGCAGCAGCACCGGTGGCACTCAGGTCCCATGCAATTGTTT
AGGCTCTGCTTTGTGGATATAATCAAATCTAAGATCGGTTTCTGGAAGAAGTTCAACCTC
ATATTCCTCTTCTTCCTGCTCCGGAAGCTGATACTACCCTTCTACTCCTTCACCCTCTTC
TGCGTGATCCTCCCCATGACGATGTTCGTCCCCGAAGCCGAGCTCCCCGCGTGGGTGGTG
TGCTACATCCCGGCGACGATGTCCATCCTCAACATCCTCCCGTCCCCGAAATCGTTCCCG
TTCATCGTCCCGTACCTGCTGTTCGAGAACACCATGTCGGTGACCAAGTTCAACGCCATG
GTCTCCGGCCTGTTCCAGCTGGGGAGCGCCTACGAGTGGGTCGTCACCAAGAAGTCGGGG
CGCTCCTCCGAGGGCGACCTCGTGGCCCTCGTGGAGAAGCACTCCAAGCAGCAGAGGGTA
GGCTCGGCGCCCAACCTCGACGCGCTGACCAAGGAGTCGAAGGGCACCGAGGAGGAGAAG
AATAAGAAGAAGAGGAAGAAGAAGCACAACAGGATCTACAGGAAGGAGCTCGCGCTGTCC
TTCCTCCTGCTGACCGCGGCCGCCCGCAGCTTGCTGTCCGCCCAGGGCGTCCACTTCTAC
TTCCTCCTGTTCCAGGGGGTTTCGTTCTTGGTCGTCGGGCTCGACCTGATCGGCGAGCAG
GTGGATTGA

Peptide Sequence

PEP ID

Zm00001d038676_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:6:162387696:162391572:1 gene:Zm00001d038676 transcript:Zm00001d038676_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable xyloglucan glycosyltransferase 12
Sequence

MAPSWWGRDARANGVVGGGTPVVVRMENPNWCISEVAAAASEVDAPPPAAAGGGKAGRRG
KNARQITWVLLLRAHRAAGRLTGAASAALSVAAAARRRVAAGRTDSDADADAAPGESAAL
RARSYGCIRLFLALSLLLLAVEVAAYLRGWHLEVDVGAGILAVDGLFAAAYAAWMRARLD
YLAPPLQFLTNACVLLFLVQSVDRLVLCLGCFWIKLKGVRPVPPLPADKEDVEAGPDGVP
MVLVQMPMCNEREVYQQSIGAVCSLDWPRSNFLVQVLDDSDDATTSALIKEEVEKWQREG
VRIVYRHRVIRDGYKAGNLKSAMNCSYVKDYEFVVIFDADFQPQADFLKRTVPHFKGKDD
VGLVQARWSFVNKDENLLTRLQNINLCFHFEVEQQVNGAFLNFFGFNGTAGVWRIKALEE
SGGWMERTTVEDMDIAVRAHLKGWKFLFLNDVECQCELPESYEAYRKQQHRWHSGPMQLF
RLCFVDIIKSKIGFWKKFNLIFLFFLLRKLILPFYSFTLFCVILPMTMFVPEAELPAWVV
CYIPATMSILNILPSPKSFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSAYEWVVTKKSG
RSSEGDLVALVEKHSKQQRVGSAPNLDALTKESKGTEEEKNKKKRKKKHNRIYRKELALS
FLLLTAAARSLLSAQGVHFYFLLFQGVSFLVVGLDLIGEQVD

Transcript Sequence

Transcript ID

Zm00001d038676_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:162387696:162391572:1 gene:Zm00001d038676 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable xyloglucan glycosyltransferase 12
Sequence

GTTCTTCCTTCCTTCCGCGCGCGCGCACACCCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTGCTGTGCCCGCGGCTATTAAGCCCGTTCTGGATGAGTCGGTGAGGGAGGACGA
CGAGGAGAGCCGGGGTCATCGGATCGCTGCCGAGGGTTCTCCGTTTGTGCGACAGAGAGG
TGGTGGTGGTGACGGTGTCAGTGCGTGCGTGCGTGCGTGCCAATGGCGCCGTCGTGGTGG
GGGCGGGACGCGAGGGCCAACGGCGTCGTTGGCGGCGGCACGCCCGTGGTGGTCAGGATG
GAGAACCCCAACTGGTGCATCTCCGAGGTCGCCGCCGCGGCGTCGGAGGTGGACGCGCCG
CCGCCGGCGGCGGCCGGGGGCGGCAAGGCCGGGCGGCGGGGCAAGAACGCGCGCCAGATC
ACGTGGGTGCTGCTCCTCAGGGCGCACCGCGCCGCGGGCCGCCTCACGGGGGCGGCCTCC
GCCGCGCTCTCCGTGGCCGCCGCCGCGCGCCGCAGGGTGGCGGCGGGCCGGACCGACTCC
GACGCCGACGCCGACGCCGCCCCGGGCGAGAGCGCGGCGCTCCGGGCGCGCTCCTACGGC
TGCATCCGCCTCTTCCTCGCCCTCTCGCTGCTGCTGCTCGCCGTCGAGGTCGCGGCCTAC
CTCCGGGGCTGGCACCTCGAGGTGGACGTGGGCGCCGGGATCCTCGCCGTCGACGGCCTC
TTCGCCGCCGCCTACGCGGCCTGGATGCGCGCCCGCCTCGACTACCTCGCGCCGCCGCTG
CAGTTCCTAACCAACGCCTGCGTCCTCCTCTTCCTGGTCCAGAGCGTCGACCGCCTCGTG
CTCTGCCTCGGCTGCTTCTGGATCAAGCTCAAGGGCGTCAGGCCCGTGCCGCCGCTGCCC
GCCGACAAGGAGGACGTCGAGGCCGGTCCCGACGGCGTCCCCATGGTGCTCGTGCAGATG
CCCATGTGCAATGAGAGAGAGGTGTACCAGCAATCCATCGGTGCGGTTTGCAGCCTGGAC
TGGCCAAGGTCAAATTTCCTGGTCCAGGTGTTGGATGACTCTGATGATGCTACCACTTCG
GCACTTATCAAGGAGGAGGTGGAGAAATGGCAGCGAGAGGGTGTGCGCATAGTATACCGG
CACCGGGTGATCCGGGATGGCTACAAGGCTGGAAACCTGAAATCAGCCATGAACTGCAGT
TACGTGAAAGACTATGAGTTCGTTGTCATCTTCGATGCTGATTTCCAACCACAGGCGGAC
TTCCTGAAGCGCACCGTGCCCCATTTCAAGGGAAAGGATGACGTCGGGTTGGTTCAGGCG
AGATGGTCGTTCGTAAACAAGGATGAGAACTTGCTGACCAGGCTTCAGAACATAAATCTT
TGCTTCCACTTCGAGGTGGAGCAGCAGGTGAACGGGGCGTTTCTCAACTTCTTCGGGTTC
AATGGCACCGCGGGAGTCTGGAGAATCAAGGCGCTTGAGGAGTCTGGAGGATGGATGGAG
AGGACGACGGTGGAGGACATGGACATAGCTGTTCGAGCGCACCTCAAAGGGTGGAAGTTT
CTCTTTCTAAACGATGTCGAGTGTCAGTGTGAATTGCCAGAATCGTATGAAGCGTACAGA
AAGCAGCAGCACCGGTGGCACTCAGGTCCCATGCAATTGTTTAGGCTCTGCTTTGTGGAT
ATAATCAAATCTAAGATCGGTTTCTGGAAGAAGTTCAACCTCATATTCCTCTTCTTCCTG
CTCCGGAAGCTGATACTACCCTTCTACTCCTTCACCCTCTTCTGCGTGATCCTCCCCATG
ACGATGTTCGTCCCCGAAGCCGAGCTCCCCGCGTGGGTGGTGTGCTACATCCCGGCGACG
ATGTCCATCCTCAACATCCTCCCGTCCCCGAAATCGTTCCCGTTCATCGTCCCGTACCTG
CTGTTCGAGAACACCATGTCGGTGACCAAGTTCAACGCCATGGTCTCCGGCCTGTTCCAG
CTGGGGAGCGCCTACGAGTGGGTCGTCACCAAGAAGTCGGGGCGCTCCTCCGAGGGCGAC
CTCGTGGCCCTCGTGGAGAAGCACTCCAAGCAGCAGAGGGTAGGCTCGGCGCCCAACCTC
GACGCGCTGACCAAGGAGTCGAAGGGCACCGAGGAGGAGAAGAATAAGAAGAAGAGGAAG
AAGAAGCACAACAGGATCTACAGGAAGGAGCTCGCGCTGTCCTTCCTCCTGCTGACCGCG
GCCGCCCGCAGCTTGCTGTCCGCCCAGGGCGTCCACTTCTACTTCCTCCTGTTCCAGGGG
GTTTCGTTCTTGGTCGTCGGGCTCGACCTGATCGGCGAGCAGGTGGATTGATAGCAGTTG
AATAATGGGTTATATATATATATATATATATATATTTTCGCTTGAAGAAATCCTCGCAGG
CATCATCAAATTCAAAGGGCTCTTTGTGAAGGGAAGAGCGTCGCCTTCTTGGATGCGGAA
ACCTTGGGTCCCTGTTCCTGTTCCAGGAGGGGTCGGAAACGTGGGGAGCTGTGTAGATAG
GTATAGCTTGGGGTTTAGCCTGCGAGATGCTTTTGTTCTTCCAGGTTTCGATTCTTTTGT
AAGAATATTTGTGCCCCTACATGCAAGGGCTCTTTTGTTTTTTTCTTTTTTTGACAGACT
TTACCTTCAAATGAAGATAATACTTGTGTTCCATTC