Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d038589_T008
CDS Infomation

cds chromosome:B73_RefGen_v4:6:160580338:160585615:-1 gene:Zm00001d038589 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glyoxysomal processing protease glyoxysomal
Sequence

ATGGAGGCCCAGGAGATCGCCGCTGCAGCGCGCCACTTCTGCGCCATGGTTCGAATCGTC
GGTCCGGACCCCAAGGCCGTGAAGATGCGCCGCCACGCCTTTCATTTTCACCATTCGGGG
TCGACCACGCTCTCGGCGTCGGCTCTGCTCCTGCCGCGGGGCGCTTTAGCGGAGCCGCCG
CTACTTCTCGACCATATCTGCTCGGCCCACGGGCACGCGGCAGGAGACGTCGCGCTCACG
GCTGCTTCCCTCGTCGAGCCGTTCCTGGTCGCGGAGCAGCGCAATAACTCCGGCGAGGAG
CTTCAGCCGAGGTTGGTTCCGGAGACGCGTCTTGATGTGTTTGTTGAGTATGAGTTGGGG
AATGCTCAAGATGGGAAGTCTGGACCTCCGCGGTGGCTTCCAGCTCGACTGCTTGCCATG
GTTGATGTCCCAACAGCTGCTGTTTCTGCTTTATCCTTATTGAGACATGACGATTCATTC
ATCAGAAGGCCAACTTGGGATGTAGGCTGGTCATTGGCTGATGCTAATCAGAAACAGGTC
TCTTTGTTCATCGAATCAAAATCTTCCCTCGAGTCTAACAGGAATAATTCATCTTTGGAG
TCAGTAGACTCATTGATGTTGGCCAAGTCTGCCACAAGAATTGCTATTCTAGGAATTTCA
ACCTCCAATTTAAATGATGCAAGACGTATCAATGTTTCAGTGATGCAACAACGAGGGGAC
CCTTTGCTTATAGTAGGATCTCCATTTGGCCTCATGTCACCCTTCCATTTCTTCAACAGT
GTATCAGTTGGTGCTGTTGCAAATTGCCTTCCTCCATGCACTGCAAGGAGCTCATTACTG
ATGGCTGACATGCACTGTCTCCCTGGCATGGAAGGCGCTCCAGTGTTTGACCAAAATTCT
TGCCTCGTGGGGCTGCTGATGAACCCATTAACACAGAAAGGCAGCAATATAGAAGTCCAG
CTCGTGATTACATGGGATGCAATATGCACGGAATGGAACAGCAAAAAACTGGAGGAAATT
GAACGACCCCCAAGAAAACTACCTAATGACAAAAATACAGATAGTAAATCTATGGAATTA
CGGCATGTATATAACTATGTGAGGGTTTTCTCTTCTACGGACAACAAAACTAATCAGCAT
TGCATATCACCCCGTTCGCTCAGAGAGGCTATATCTGCAGTTGTTCTTGTCACGGTTGGT
GATACGTCTTGGGCTTCAGGTATTGTTCTGAACAAAAGGGGTTTAGTTCTGACAAATGCT
CATCTCTTGGAACCTTGGAGATTTGGAAGAACTTCACCTTCAGATTTACAAGCCTCGTTC
GCTGGAGAACATCTCAATGCTGGAGAAAACAAATCATTGCAACCACAACAAGGCAAAATT
TCCAATGAAGATGCTGTCAAGCATAAGGTTTCGTCATTTAACTTGGGTTTCAAAAGAGGG
AAGAGAATATCTGTTCGTTTGGACCATGAAGAGAGACAGATATGGTGCAATGCTAGTGTG
GTTTTCATCTCAAAGGGTCCACTTGATGTTGCATTGCTTCAAATAGAAAAGGTTCCAGTT
GAATTAAATACAATCAGACCAGAATTTGTTTGTCCAACAGCAGGGTCGCCTGTTTATGTT
GTTGGGCATGGCCTTTTTGGACCCCGATCAGGCCTACACTCTTCTCTATACTCGGGGGTT
GTGTCAAAGGTTGTCCAAATCCCAGCAAATCAACTTTCTCATCTGGCCCGTGCTGAGGCT
GACAATATGGACATACCAGTAATGCTTCAGACAACAGCAGCAGTTCATCCAGGAGCCAGT
GGCGGCGTTCTTGTTAATACACATGGGCTAATGGTTGGGATAATAACAAGTAATGCTAAG
CATGGTGGTGGAAGCACAATACCTCATCTGAATTTCAGCATCCCCTGCAAATTACTGGTT
GCAGTCTTCGAGTATTCAGCAAATGGAAACCTCGTGGTTTTGGAGCAGTTGGACAAACCA
AATGAAGTGCTCTCATCAGTTTGGGCATTGGCACCATCATCATCCCCATTTGTCAGGAGC
TCCCCAGAAAAAGGCAAAGAGGAAAAGGTCTTGGAGTTCTCTAAGTTTCTTAGTGACAAG
CAACAAGCTCTGAAATCTAACGTAGATCTGAAGGAACTATTTAGGTACAAGACTCCCAGC
AAAATATAG

Peptide Sequence

PEP ID

Zm00001d038589_P008
PEP Infomation

pep chromosome:B73_RefGen_v4:6:160580338:160585615:-1 gene:Zm00001d038589 transcript:Zm00001d038589_T008 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glyoxysomal processing protease glyoxysomal
Sequence

MEAQEIAAAARHFCAMVRIVGPDPKAVKMRRHAFHFHHSGSTTLSASALLLPRGALAEPP
LLLDHICSAHGHAAGDVALTAASLVEPFLVAEQRNNSGEELQPRLVPETRLDVFVEYELG
NAQDGKSGPPRWLPARLLAMVDVPTAAVSALSLLRHDDSFIRRPTWDVGWSLADANQKQV
SLFIESKSSLESNRNNSSLESVDSLMLAKSATRIAILGISTSNLNDARRINVSVMQQRGD
PLLIVGSPFGLMSPFHFFNSVSVGAVANCLPPCTARSSLLMADMHCLPGMEGAPVFDQNS
CLVGLLMNPLTQKGSNIEVQLVITWDAICTEWNSKKLEEIERPPRKLPNDKNTDSKSMEL
RHVYNYVRVFSSTDNKTNQHCISPRSLREAISAVVLVTVGDTSWASGIVLNKRGLVLTNA
HLLEPWRFGRTSPSDLQASFAGEHLNAGENKSLQPQQGKISNEDAVKHKVSSFNLGFKRG
KRISVRLDHEERQIWCNASVVFISKGPLDVALLQIEKVPVELNTIRPEFVCPTAGSPVYV
VGHGLFGPRSGLHSSLYSGVVSKVVQIPANQLSHLARAEADNMDIPVMLQTTAAVHPGAS
GGVLVNTHGLMVGIITSNAKHGGGSTIPHLNFSIPCKLLVAVFEYSANGNLVVLEQLDKP
NEVLSSVWALAPSSSPFVRSSPEKGKEEKVLEFSKFLSDKQQALKSNVDLKELFRYKTPS
KI

Transcript Sequence

Transcript ID

Zm00001d038589_T008
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:160580338:160585615:-1 gene:Zm00001d038589 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glyoxysomal processing protease glyoxysomal
Sequence

GCGCGCCATGGAGGCCCAGGAGATCGCCGCTGCAGCGCGCCACTTCTGCGCCATGGTTCG
AATCGTCGGTCCGGACCCCAAGGCCGTGAAGATGCGCCGCCACGCCTTTCATTTTCACCA
TTCGGGGTCGACCACGCTCTCGGCGTCGGCTCTGCTCCTGCCGCGGGGCGCTTTAGCGGA
GCCGCCGCTACTTCTCGACCATATCTGCTCGGCCCACGGGCACGCGGCAGGAGACGTCGC
GCTCACGGCTGCTTCCCTCGTCGAGCCGTTCCTGGTCGCGGAGCAGCGCAATAACTCCGG
CGAGGAGCTTCAGCCGAGGTTGGTTCCGGAGACGCGTCTTGATGTGTTTGTTGAGTATGA
GTTGGGGAATGCTCAAGATGGGAAGTCTGGACCTCCGCGGTGGCTTCCAGCTCGACTGCT
TGCCATGGTTGATGTCCCAACAGCTGCTGTTTCTGCTTTATCCTTATTGAGACATGACGA
TTCATTCATCAGAAGGCCAACTTGGGATGTAGGCTGGTCATTGGCTGATGCTAATCAGAA
ACAGGTCTCTTTGTTCATCGAATCAAAATCTTCCCTCGAGTCTAACAGGAATAATTCATC
TTTGGAGTCAGTAGACTCATTGATGTTGGCCAAGTCTGCCACAAGAATTGCTATTCTAGG
AATTTCAACCTCCAATTTAAATGATGCAAGACGTATCAATGTTTCAGTGATGCAACAACG
AGGGGACCCTTTGCTTATAGTAGGATCTCCATTTGGCCTCATGTCACCCTTCCATTTCTT
CAACAGTGTATCAGTTGGTGCTGTTGCAAATTGCCTTCCTCCATGCACTGCAAGGAGCTC
ATTACTGATGGCTGACATGCACTGTCTCCCTGGCATGGAAGGCGCTCCAGTGTTTGACCA
AAATTCTTGCCTCGTGGGGCTGCTGATGAACCCATTAACACAGAAAGGCAGCAATATAGA
AGTCCAGCTCGTGATTACATGGGATGCAATATGCACGGAATGGAACAGCAAAAAACTGGA
GGAAATTGAACGACCCCCAAGAAAACTACCTAATGACAAAAATACAGATAGTAAATCTAT
GGAATTACGGCATGTATATAACTATGTGAGGGTTTTCTCTTCTACGGACAACAAAACTAA
TCAGCATTGCATATCACCCCGTTCGCTCAGAGAGGCTATATCTGCAGTTGTTCTTGTCAC
GGTTGGTGATACGTCTTGGGCTTCAGGTATTGTTCTGAACAAAAGGGGTTTAGTTCTGAC
AAATGCTCATCTCTTGGAACCTTGGAGATTTGGAAGAACTTCACCTTCAGATTTACAAGC
CTCGTTCGCTGGAGAACATCTCAATGCTGGAGAAAACAAATCATTGCAACCACAACAAGG
CAAAATTTCCAATGAAGATGCTGTCAAGCATAAGGTTTCGTCATTTAACTTGGGTTTCAA
AAGAGGGAAGAGAATATCTGTTCGTTTGGACCATGAAGAGAGACAGATATGGTGCAATGC
TAGTGTGGTTTTCATCTCAAAGGGTCCACTTGATGTTGCATTGCTTCAAATAGAAAAGGT
TCCAGTTGAATTAAATACAATCAGACCAGAATTTGTTTGTCCAACAGCAGGGTCGCCTGT
TTATGTTGTTGGGCATGGCCTTTTTGGACCCCGATCAGGCCTACACTCTTCTCTATACTC
GGGGGTTGTGTCAAAGGTTGTCCAAATCCCAGCAAATCAACTTTCTCATCTGGCCCGTGC
TGAGGCTGACAATATGGACATACCAGTAATGCTTCAGACAACAGCAGCAGTTCATCCAGG
AGCCAGTGGCGGCGTTCTTGTTAATACACATGGGCTAATGGTTGGGATAATAACAAGTAA
TGCTAAGCATGGTGGTGGAAGCACAATACCTCATCTGAATTTCAGCATCCCCTGCAAATT
ACTGGTTGCAGTCTTCGAGTATTCAGCAAATGGAAACCTCGTGGTTTTGGAGCAGTTGGA
CAAACCAAATGAAGTGCTCTCATCAGTTTGGGCATTGGCACCATCATCATCCCCATTTGT
CAGGAGCTCCCCAGAAAAAGGCAAAGAGGAAAAGGTCTTGGAGTTCTCTAAGTTTCTTAG
TGACAAGCAACAAGCTCTGAAATCTAACGTAGATCTGAAGGAACTATTTAGGTACAAGAC
TCCCAGCAAAATATAGAGTGCGTCCACTAGAATTCATACAAGGAAAATGTTTGTTCCCAG
AATTTTGTATGAGACGTTTGATCCCAGAAATCCCC