Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d038579_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:6:160393660:160396437:-1 gene:Zm00001d038579 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phosphoglycerate kinase

Sequence

ATGGCGTCCGCGGCCGCCCCTCCAACCTCCCTCTCCCTCGCGGCCCGCGCGGCCACCAGG
GCAGCCGCCGCCGCCGCCGCCCCGCTGCGCAGGGGAGGCCTCGCCACGGCGTGCCAGCCG
GCACGGTCTCTGGCTTTCGCGGCGGGCGACGCGCGGCTCGCGGTCCACGTCGCGTCGCGA
TGCCGGCAGGCGTTCTCCGGGCGTGGCACGCGGGCCATGGCCACCATGGCGAAGAAGAGC
GTAGGGGAACTCACGGAGGCCGACCTCGAGGGGAAGCGCGTCTTCGTGCGCGCCGACCTC
AACGTGCCGCTCGACGAGAACCAGAACATCACCGACGACACCCGCATCCGGGCCGCCATC
CCCACCATCCAGTACATCCTCAGCAAGGGCGCCAAGGTCATCCTCTCAAGCCACTTGGGT
CGCCCTAAGGGTTTTACACCCAAGTTTAGCTTAGCTCCCCTTGTAGGACGGTTGTCTGAG
CTTCTTGGCATTCAGGTGCAAAAAGCCGACGATGTTATTGGCCCTGAAGTTGAGAAGCTG
GTGGCGGCCTTGCCCAACGGTGGGGTTCTGCTGCTTGAGAACGTAAGATTCTACAAGGAA
GAGGAGAAGAATGACCCAGAGTTTGCACAGAAGCTTGCCTCCCTAGCAGATCTTTATGTT
AACGATGCATTTGGAACAGCCCACAGGGCGCATGCATCGACCGAGGGAGTTACCAAGTTT
TTGCAGCCTTCTGTTGCAGGGTTCCTTCTGCAGAAGGAACTCGACTACCTTGTCGGAGCT
GTTTCAAGCCCTAAACGCCCTTTTGCTGCCATCGTGGGTGGTTCAAAGGTGTCATCCAAG
ATCGGGGTTATTGAGTCCCTGTTGGAGAAGTGTGATATCCTTCTCTTGGGTGGTGGTATG
ATCTTCACGTTTTACAAGGCACAAGGTCTCCCTGTTGGTGCTTCATTGGTCGAGGAAGAC
AAACTCGAGCTTGCAACGTCTCTACTTGCAAAGGCTAAGGAAAAGGGTGTCTCCCTTATG
CTGCCAACCGATGTTGTCATTGCTGACAAGTTTGCCCCTGATGCTAACAGCCAGATTGTT
CCAGCATCTGCAATTCCTGATGGTTGGATGGGCCTGGATATTGGCCCAGATTCTGTCGCT
TCATTCAACGCAGCCCTGGATACAACCAAGACGGTCATCTGGAACGGGCCCATGGGTGTC
TTCGAATTTGACAAGTTCGCTGTAGGAACCGAGGCTGTGGCAAAGAAGCTGGCAGAACTC
AGCGGCAAGGGCGTCACAACTATCATCGGAGGCGGAGACTCCGTCGCCGCCGTCGAGAAG
GTGGGAGTTGCTGACGTTATGAGCCACATTTCCACGGGAGGTGGCGCTAGCCTGGAATTG
TTGGAAGGAAAGGAGCTTCCGGGAGTTGTTGCGTTGAATGAAGCCGCCACTGTGACCGTA
TGA

Peptide Sequence

PEP ID

Zm00001d038579_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:6:160393660:160396437:-1 gene:Zm00001d038579 transcript:Zm00001d038579_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phosphoglycerate kinase

Sequence

MASAAAPPTSLSLAARAATRAAAAAAAPLRRGGLATACQPARSLAFAAGDARLAVHVASR
CRQAFSGRGTRAMATMAKKSVGELTEADLEGKRVFVRADLNVPLDENQNITDDTRIRAAI
PTIQYILSKGAKVILSSHLGRPKGFTPKFSLAPLVGRLSELLGIQVQKADDVIGPEVEKL
VAALPNGGVLLLENVRFYKEEEKNDPEFAQKLASLADLYVNDAFGTAHRAHASTEGVTKF
LQPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGM
IFTFYKAQGLPVGASLVEEDKLELATSLLAKAKEKGVSLMLPTDVVIADKFAPDANSQIV
PASAIPDGWMGLDIGPDSVASFNAALDTTKTVIWNGPMGVFEFDKFAVGTEAVAKKLAEL
SGKGVTTIIGGGDSVAAVEKVGVADVMSHISTGGGASLELLEGKELPGVVALNEAATVTV

Transcript Sequence

Transcript ID

Zm00001d038579_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:160393660:160396437:-1 gene:Zm00001d038579 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phosphoglycerate kinase

Sequence

AGCGATAAGCAAATCTCCTCCCCACTTTATCGTCCACAAAGCCTTCTTCCCGCCCTCCCG
AATCGCTCCCTCTCTGTCCCTGCGCTCCAGCCGCCGCCGTCGCCTCCGCCCCCCGAATCC
CAATGGCGTCCGCGGCCGCCCCTCCAACCTCCCTCTCCCTCGCGGCCCGCGCGGCCACCA
GGGCAGCCGCCGCCGCCGCCGCCCCGCTGCGCAGGGGAGGCCTCGCCACGGCGTGCCAGC
CGGCACGGTCTCTGGCTTTCGCGGCGGGCGACGCGCGGCTCGCGGTCCACGTCGCGTCGC
GATGCCGGCAGGCGTTCTCCGGGCGTGGCACGCGGGCCATGGCCACCATGGCGAAGAAGA
GCGTAGGGGAACTCACGGAGGCCGACCTCGAGGGGAAGCGCGTCTTCGTGCGCGCCGACC
TCAACGTGCCGCTCGACGAGAACCAGAACATCACCGACGACACCCGCATCCGGGCCGCCA
TCCCCACCATCCAGTACATCCTCAGCAAGGGCGCCAAGGTCATCCTCTCAAGCCACTTGG
GTCGCCCTAAGGGTTTTACACCCAAGTTTAGCTTAGCTCCCCTTGTAGGACGGTTGTCTG
AGCTTCTTGGCATTCAGGTGCAAAAAGCCGACGATGTTATTGGCCCTGAAGTTGAGAAGC
TGGTGGCGGCCTTGCCCAACGGTGGGGTTCTGCTGCTTGAGAACGTAAGATTCTACAAGG
AAGAGGAGAAGAATGACCCAGAGTTTGCACAGAAGCTTGCCTCCCTAGCAGATCTTTATG
TTAACGATGCATTTGGAACAGCCCACAGGGCGCATGCATCGACCGAGGGAGTTACCAAGT
TTTTGCAGCCTTCTGTTGCAGGGTTCCTTCTGCAGAAGGAACTCGACTACCTTGTCGGAG
CTGTTTCAAGCCCTAAACGCCCTTTTGCTGCCATCGTGGGTGGTTCAAAGGTGTCATCCA
AGATCGGGGTTATTGAGTCCCTGTTGGAGAAGTGTGATATCCTTCTCTTGGGTGGTGGTA
TGATCTTCACGTTTTACAAGGCACAAGGTCTCCCTGTTGGTGCTTCATTGGTCGAGGAAG
ACAAACTCGAGCTTGCAACGTCTCTACTTGCAAAGGCTAAGGAAAAGGGTGTCTCCCTTA
TGCTGCCAACCGATGTTGTCATTGCTGACAAGTTTGCCCCTGATGCTAACAGCCAGATTG
TTCCAGCATCTGCAATTCCTGATGGTTGGATGGGCCTGGATATTGGCCCAGATTCTGTCG
CTTCATTCAACGCAGCCCTGGATACAACCAAGACGGTCATCTGGAACGGGCCCATGGGTG
TCTTCGAATTTGACAAGTTCGCTGTAGGAACCGAGGCTGTGGCAAAGAAGCTGGCAGAAC
TCAGCGGCAAGGGCGTCACAACTATCATCGGAGGCGGAGACTCCGTCGCCGCCGTCGAGA
AGGTGGGAGTTGCTGACGTTATGAGCCACATTTCCACGGGAGGTGGCGCTAGCCTGGAAT
TGTTGGAAGGAAAGGAGCTTCCGGGAGTTGTTGCGTTGAATGAAGCCGCCACTGTGACCG
TATGAAGCATGCTTTCATTTTGTTTCGTCTTCGTCTTCACGTGCCGTTGTATACTTGCTA
CATTCTCGCTTGCACTTGCACCTCCTCAGCCGCTCGCCCGAAATGTAAGAGACCAATGTT
TTATAGAGCTAATGGAAATCGTTTG