Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d038525_T011
CDS Infomation	cds chromosome:B73_RefGen_v4:6:159270351:159275183:1 gene:Zm00001d038525 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable NOT transcription complex subunit VIP2
Sequence	ATGTCAGGACCGCTGAATTCAAACATTAGTGGGGGCCCCTCGAACCTTAGAGATTCCACA GGAAGGCCATTTACATCATCGTTTTCTGGTCAATCTGGATCACTTCCAGGTTTTCATCAC TCAGGTTCACACAACATTCATGGAAATCTTAATCTTGCAAATATCTCTGGATCATTAGCA CCACGAAATAATTCAATGGCAGGCATTCCGTCTGCAGGGGTTCAACAACCCAGTGGTGGC ATTTCCAGTGGCCGTTTCCCTCCAAATAATCTTCAAGCTTCCTTGTCTCAGATTCCTCAT GGGCATTCTGGGATTAGCAACAGAGGAGGTATGAATGTTGGGGGAAATCCTGGATTTGGT AGTAGCATGAATGCTATTGGTGGTTCAATACAAGGTTTATCCTCAAACTTGGCTAATGTG GGTAACCGCAATTCTGCTCCTGGGTTGGCAGCTTCTCCAGTCTTAGGAAATTTAGGCCCA AGAATAGCAAGTTCTGGGAATATTTTGGGTGGGAGCAATATTGGGAGAAGTATAAGCTCT GGAGGACTGTCTATGCCTGGTATTGCATCTCGCATGAATTTAAGTGGCAACTCTGGTAGT GGGGCTATCAACATTCAAGGATCCAACCGTATTGGTATGCTTCAACAAGCATCCCCACAA TTTATGAACTTGCTTGGAAGTTCTTACCCAACACCTGGAGGGTCACTATCTCAGAATCAA GTACAGTCAGGAAGTGGTTCTTTAGGATCTTCTGGAATGCTATATGAAGGAAGCTCAGGT GACAATGCTCCATTTGATATTAATGACTTTCCTCAGTTAACTGGACGACCTAATTCTGCT GGAGGTGGTCAAGGACAATATGGATCACTGAGAAAGCATGGAGTAAGCGTCAATGCCATT GTACAACAAAACCAGGAATTCAGCATTCAGAATGAAGATTTTCCAGCTTTACCAGGAAAT AAAGGTAGTTCCTCAGATTATCCTATGGATATTCATCACAAGGACCACCTTCAAGAGAAT ATAAATATTATGCAAGCACAACATTATCCTATGGCTAGACCATCTGGCTTTAGCTTGGGA AGCAGTTATCCACCCCGTCAACATCAGCAGAGTGCTAATTCAGTTCAAAATGCTGGGCTG GAAACTATTGGACTAAGACCGGCAAATTCTCCAAGTCTGTCAACTAATTCAGGGGTTTAT GAGCAATTCATGCAGAAGTACCATCAACCACAGACTCAAAATTCACTTAGGTTGCAGGCA GCTTCAGGTCCTCAACAGTACAAGGATCAGAGCCAAAAATCCGTTCAGGGAACACAGGCT GTGCCGGATCCATATAGCTTACTTGGACTGTTGAGTTTAATAAGAATGAAAGAGCCTGGA CCAACAACTCTTGCTTTAGGGATTGATTTGACCTCGTTGGGGTTGAATTTGAACTCCCAA GATAATCTTTACAAGACATTTGGCTCTCCGTGGTCAAGCGAGCCAGCTGTAGGAGAACCT GATTATCAGATCCCAGCTTGTTTCTCTGCAGAGCCACCACCAGCACTGCAACCATTTCAT TTTCAGAAGTTTCACCCTTTGACACTATTCTACATCTTTTACAGCATGCCTAAAGATGCC GCTCAGTTATATGCTGCTAATGAACTATACAATAAAGGGTGGTTTTACCACAAAGACTAC CGTGTTTGGCTAACAAGAGCTCCTAATTCCGCACCTCTTGTGAAAACTCCACTTCATGAA CGAGGGTCCTACATTTGTTTTGATCCAAGCATCTGGGATACTGTTCATAAGGACAACTTT GTTCTCCATTACGAAGCAGTGGAGAAGAGACCTGTCCTTCCTTCTGCTGGCCAAAATATT AGGCGAGAACTATAA

Peptide Sequence

PEP ID	Zm00001d038525_P011
PEP Infomation	pep chromosome:B73_RefGen_v4:6:159270351:159275183:1 gene:Zm00001d038525 transcript:Zm00001d038525_T011 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable NOT transcription complex subunit VIP2
Sequence	MSGPLNSNISGGPSNLRDSTGRPFTSSFSGQSGSLPGFHHSGSHNIHGNLNLANISGSLA PRNNSMAGIPSAGVQQPSGGISSGRFPPNNLQASLSQIPHGHSGISNRGGMNVGGNPGFG SSMNAIGGSIQGLSSNLANVGNRNSAPGLAASPVLGNLGPRIASSGNILGGSNIGRSISS GGLSMPGIASRMNLSGNSGSGAINIQGSNRIGMLQQASPQFMNLLGSSYPTPGGSLSQNQ VQSGSGSLGSSGMLYEGSSGDNAPFDINDFPQLTGRPNSAGGGQGQYGSLRKHGVSVNAI VQQNQEFSIQNEDFPALPGNKGSSSDYPMDIHHKDHLQENINIMQAQHYPMARPSGFSLG SSYPPRQHQQSANSVQNAGLETIGLRPANSPSLSTNSGVYEQFMQKYHQPQTQNSLRLQA ASGPQQYKDQSQKSVQGTQAVPDPYSLLGLLSLIRMKEPGPTTLALGIDLTSLGLNLNSQ DNLYKTFGSPWSSEPAVGEPDYQIPACFSAEPPPALQPFHFQKFHPLTLFYIFYSMPKDA AQLYAANELYNKGWFYHKDYRVWLTRAPNSAPLVKTPLHERGSYICFDPSIWDTVHKDNF VLHYEAVEKRPVLPSAGQNIRREL

Transcript Sequence

Transcript ID	Zm00001d038525_T011
Transcript Infomation	cdna chromosome:B73_RefGen_v4:6:159270351:159275183:1 gene:Zm00001d038525 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable NOT transcription complex subunit VIP2
Sequence	TTTCATTTTTCTTTATTTTGAGTAAAATTCGTTTGTTGAAGGATATGATTGTATAATTAA CCTGCACATGTATTATCTCTTCTTGGACTTCAGATTGGATAACAATATCATGCCATTAGG TGGATAACATTTGACGTGCTCCTGGTTTGTTCATTTCCGGGCATCATCAAAATGTCAGGA CCGCTGAATTCAAACATTAGTGGGGGCCCCTCGAACCTTAGAGATTCCACAGGAAGGCCA TTTACATCATCGTTTTCTGGTCAATCTGGATCACTTCCAGGTTTTCATCACTCAGGTTCA CACAACATTCATGGAAATCTTAATCTTGCAAATATCTCTGGATCATTAGCACCACGAAAT AATTCAATGGCAGGCATTCCGTCTGCAGGGGTTCAACAACCCAGTGGTGGCATTTCCAGT GGCCGTTTCCCTCCAAATAATCTTCAAGCTTCCTTGTCTCAGATTCCTCATGGGCATTCT GGGATTAGCAACAGAGGAGGTATGAATGTTGGGGGAAATCCTGGATTTGGTAGTAGCATG AATGCTATTGGTGGTTCAATACAAGGTTTATCCTCAAACTTGGCTAATGTGGGTAACCGC AATTCTGCTCCTGGGTTGGCAGCTTCTCCAGTCTTAGGAAATTTAGGCCCAAGAATAGCA AGTTCTGGGAATATTTTGGGTGGGAGCAATATTGGGAGAAGTATAAGCTCTGGAGGACTG TCTATGCCTGGTATTGCATCTCGCATGAATTTAAGTGGCAACTCTGGTAGTGGGGCTATC AACATTCAAGGATCCAACCGTATTGGTATGCTTCAACAAGCATCCCCACAATTTATGAAC TTGCTTGGAAGTTCTTACCCAACACCTGGAGGGTCACTATCTCAGAATCAAGTACAGTCA GGAAGTGGTTCTTTAGGATCTTCTGGAATGCTATATGAAGGAAGCTCAGGTGACAATGCT CCATTTGATATTAATGACTTTCCTCAGTTAACTGGACGACCTAATTCTGCTGGAGGTGGT CAAGGACAATATGGATCACTGAGAAAGCATGGAGTAAGCGTCAATGCCATTGTACAACAA AACCAGGAATTCAGCATTCAGAATGAAGATTTTCCAGCTTTACCAGGAAATAAAGGTAGT TCCTCAGATTATCCTATGGATATTCATCACAAGGACCACCTTCAAGAGAATATAAATATT ATGCAAGCACAACATTATCCTATGGCTAGACCATCTGGCTTTAGCTTGGGAAGCAGTTAT CCACCCCGTCAACATCAGCAGAGTGCTAATTCAGTTCAAAATGCTGGGCTGGAAACTATT GGACTAAGACCGGCAAATTCTCCAAGTCTGTCAACTAATTCAGGGGTTTATGAGCAATTC ATGCAGAAGTACCATCAACCACAGACTCAAAATTCACTTAGGTTGCAGGCAGCTTCAGGT CCTCAACAGTACAAGGATCAGAGCCAAAAATCCGTTCAGGGAACACAGGCTGTGCCGGAT CCATATAGCTTACTTGGACTGTTGAGTTTAATAAGAATGAAAGAGCCTGGACCAACAACT CTTGCTTTAGGGATTGATTTGACCTCGTTGGGGTTGAATTTGAACTCCCAAGATAATCTT TACAAGACATTTGGCTCTCCGTGGTCAAGCGAGCCAGCTGTAGGAGAACCTGATTATCAG ATCCCAGCTTGTTTCTCTGCAGAGCCACCACCAGCACTGCAACCATTTCATTTTCAGAAG TTTCACCCTTTGACACTATTCTACATCTTTTACAGCATGCCTAAAGATGCCGCTCAGTTA TATGCTGCTAATGAACTATACAATAAAGGGTGGTTTTACCACAAAGACTACCGTGTTTGG CTAACAAGAGCTCCTAATTCCGCACCTCTTGTGAAAACTCCACTTCATGAACGAGGGTCC TACATTTGTTTTGATCCAAGCATCTGGGATACTGTTCATAAGGACAACTTTGTTCTCCAT TACGAAGCAGTGGAGAAGAGACCTGTCCTTCCTTCTGCTGGCCAAAATATTAGGCGAGAA CTATAAGGTTCTCCTGCATTTGAAGTTAATTTGGTTTGATCAGTAGCTGTTGTCATGGAT GGGCTGAGTTCATACAAAATGATTCTATAAGAACTTATGACCCCCAGGTGGCAGTTGTAG AAATGTAGCTGAGATTTAGATTTTCTTCATAATTTGTTGGCATTATTTAGTAGGGCCATT GTTGTACCAATGTTGTGACTTGATTTGTTGTTGTTGTTGTTGTGACGCAGTCACCGTGAT GATAATAAATGTTTTGACCGTTATGAGTCAGCATGAAAATATAATGAGACTTTTGATTTG AGAT