Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d038521_T010
CDS Infomation

cds chromosome:B73_RefGen_v4:6:159137061:159138987:-1 gene:Zm00001d038521 gene_biotype:protein_coding transcript_biotype:protein_coding description:SKU5 similar 13
Sequence

ATGGCGACGACGACGCGTGTTGCCGCCGCCGCCACCGGCGTGCTGCTGGTCCTGTCGGCG
TTGGCGACCCTGGCGCGGGCCGAGGACCCGTACCTGTTCTTCGAGTGGAAGGTGACGTAC
GGGACCAAGTCCCTGCTGGGCGTGCCCCAGAAGGTCATCCTCATCAACGGCGAGTTCCCC
GGCCCCAGGATCAACTGCTCCTCCAACAACAACATCGTCGTCAACGTCTTCAACCAGCTC
GACCATCCGCTCCTTTTCACCTGGAACGGGATGCAGCACAGGAAGAACTCGTGGATGGAC
GGGATGCCAGGCACGCAGTGTCCGATCCTGCCTAACACCAACTTCACGTACAAGTGGCAG
CCCAAGGACCAGATCGGCAGCTTCTTCTACTTCCCGTCCATCGGCATGCAGCGGGCGGCG
GGCGGCTACGGGGCCATCAGCGTGGTCAGCCGCCTCCTCATCCCGGTCCCGTTCGACCAG
CCCCCGCCGGAGAACGACCACGTGGTGCTCATCGGAGACTGGTACACCAAGGACCACGAG
GTGCTAGCCCGCCAGATCGACGCCGGCAAGGGCGTGGGCCGCCCCGCGGGCGTGCTCATC
AACGGCAAGGGCGGCAAGGACCTGGAGGCCGCGCCTGCCTTCACCTTCGAGGCCGGCAAG
ACGTACCGCCTCCGCGTCTGCAACACCGGGATCAAGGCGTCGCTCAACTTCCGCATCCAG
GGCCACTACATGAAGCTGGTCGAGCTGGAGGGCTCCCACACCCTGCAGAACACGTACGAC
TCGCTCGACGTCCACGTCGGCCACTGCCTCTCCGTGCTCGTCGACGCCGACCAGAAGCCC
GGCGACTACTACATGGTGGCCTCCACGCGGTTCATCCACGACGCCAAGTCCGCGTCCGCC
GTCATCCGCTACGCCGGCTCCAGCGCCCCGCCGTCGCCGAACATGACCGAGCCACCGGCC
GGCTGGGCCTGGTCCATCAACCAGGCCAGGTCGTTCCGCTGGAACCTGACGGCCAGCGCC
GCGCGGCCCAACCCGCAGGGCTCCTACCACTACGGCCAGATCAACATCACCCGCACCATC
AAGGTCATGGTCTCCCGTGGCCACATCGACGGCAAGCTCCGCTACGGCTTCAACGGCATC
TCTCACAGGGACCCCGAGACCCCCGTGAAGCTCGCCGAGTACTTCAACGCCACCGACGGG
GTATTCAGCTACAACCAGATGGGCGACGTGCCCCCTGCCGTGAACGGGCCCCTCCATGTC
ATCCCCAATGTCATCACCGCCGAGTTCCGCACCTTCATCGAGATCGTCTTCGAGAACCCC
GAGAAGAGCATAGACTCCCTCCACGTCGATGGCTACGCCTTCTTCGGCGTCGGCAAATAT
CTGTAG

Peptide Sequence

PEP ID

Zm00001d038521_P010
PEP Infomation

pep chromosome:B73_RefGen_v4:6:159137061:159138987:-1 gene:Zm00001d038521 transcript:Zm00001d038521_T010 gene_biotype:protein_coding transcript_biotype:protein_coding description:SKU5 similar 13
Sequence

MATTTRVAAAATGVLLVLSALATLARAEDPYLFFEWKVTYGTKSLLGVPQKVILINGEFP
GPRINCSSNNNIVVNVFNQLDHPLLFTWNGMQHRKNSWMDGMPGTQCPILPNTNFTYKWQ
PKDQIGSFFYFPSIGMQRAAGGYGAISVVSRLLIPVPFDQPPPENDHVVLIGDWYTKDHE
VLARQIDAGKGVGRPAGVLINGKGGKDLEAAPAFTFEAGKTYRLRVCNTGIKASLNFRIQ
GHYMKLVELEGSHTLQNTYDSLDVHVGHCLSVLVDADQKPGDYYMVASTRFIHDAKSASA
VIRYAGSSAPPSPNMTEPPAGWAWSINQARSFRWNLTASAARPNPQGSYHYGQINITRTI
KVMVSRGHIDGKLRYGFNGISHRDPETPVKLAEYFNATDGVFSYNQMGDVPPAVNGPLHV
IPNVITAEFRTFIEIVFENPEKSIDSLHVDGYAFFGVGKYL

Transcript Sequence

Transcript ID

Zm00001d038521_T010
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:159137061:159138987:-1 gene:Zm00001d038521 gene_biotype:protein_coding transcript_biotype:protein_coding description:SKU5 similar 13
Sequence

CAACGAGAGACATGGCGACGACGACGCGTGTTGCCGCCGCCGCCACCGGCGTGCTGCTGG
TCCTGTCGGCGTTGGCGACCCTGGCGCGGGCCGAGGACCCGTACCTGTTCTTCGAGTGGA
AGGTGACGTACGGGACCAAGTCCCTGCTGGGCGTGCCCCAGAAGGTCATCCTCATCAACG
GCGAGTTCCCCGGCCCCAGGATCAACTGCTCCTCCAACAACAACATCGTCGTCAACGTCT
TCAACCAGCTCGACCATCCGCTCCTTTTCACCTGGAACGGGATGCAGCACAGGAAGAACT
CGTGGATGGACGGGATGCCAGGCACGCAGTGTCCGATCCTGCCTAACACCAACTTCACGT
ACAAGTGGCAGCCCAAGGACCAGATCGGCAGCTTCTTCTACTTCCCGTCCATCGGCATGC
AGCGGGCGGCGGGCGGCTACGGGGCCATCAGCGTGGTCAGCCGCCTCCTCATCCCGGTCC
CGTTCGACCAGCCCCCGCCGGAGAACGACCACGTGGTGCTCATCGGAGACTGGTACACCA
AGGACCACGAGGTGCTAGCCCGCCAGATCGACGCCGGCAAGGGCGTGGGCCGCCCCGCGG
GCGTGCTCATCAACGGCAAGGGCGGCAAGGACCTGGAGGCCGCGCCTGCCTTCACCTTCG
AGGCCGGCAAGACGTACCGCCTCCGCGTCTGCAACACCGGGATCAAGGCGTCGCTCAACT
TCCGCATCCAGGGCCACTACATGAAGCTGGTCGAGCTGGAGGGCTCCCACACCCTGCAGA
ACACGTACGACTCGCTCGACGTCCACGTCGGCCACTGCCTCTCCGTGCTCGTCGACGCCG
ACCAGAAGCCCGGCGACTACTACATGGTGGCCTCCACGCGGTTCATCCACGACGCCAAGT
CCGCGTCCGCCGTCATCCGCTACGCCGGCTCCAGCGCCCCGCCGTCGCCGAACATGACCG
AGCCACCGGCCGGCTGGGCCTGGTCCATCAACCAGGCCAGGTCGTTCCGCTGGAACCTGA
CGGCCAGCGCCGCGCGGCCCAACCCGCAGGGCTCCTACCACTACGGCCAGATCAACATCA
CCCGCACCATCAAGGTCATGGTCTCCCGTGGCCACATCGACGGCAAGCTCCGCTACGGCT
TCAACGGCATCTCTCACAGGGACCCCGAGACCCCCGTGAAGCTCGCCGAGTACTTCAACG
CCACCGACGGGGTATTCAGCTACAACCAGATGGGCGACGTGCCCCCTGCCGTGAACGGGC
CCCTCCATGTCATCCCCAATGTCATCACCGCCGAGTTCCGCACCTTCATCGAGATCGTCT
TCGAGAACCCCGAGAAGAGCATAGACTCCCTCCACGTCGATGGCTACGCCTTCTTCGGCG
TCGGCAAATATCTGTAGGATGGGCCCCGGGAAGTGGTCGCCGGAGGTGAGGAAGACGTAC
AACCTGCTGGACACGGTGAGCCGGCACACGATCCAGGTGTACCCGCGGTCATGGACGGCA
ATCATGCTGACGTTCGACAACGCGGGCATGTGGAGCGTGCATTCCAACATCTGGGAGCGG
TACTACCTCGGGGAGCAGTTCTACATCAGCGTCGTCTCGCCGGCGCGATCACTGCGCGAC
GAGTACAACATGCCCGACAACGCCCTCCGCTGCGGCAAGGTCGTGGGGCTGCCGCTGCCG
CCGTCCTACGCCCCCGCGCGCTAAGACGACGAAGGCCTCGTTTTCTCCTCGTGGTCTGAC
CATCCAATCCAA