Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d038511_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:6:158957756:158969636:1 gene:Zm00001d038511 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:gibberellin 16,17-oxidase1 description: gibberellin 1617-oxidase1
Sequence

ATGGCCGCCATGGAGTACAGCAGCCTCTTGCCTCTGGCGCTGCTGGCAGGGTGGTGCGCC
CTCGCGGCGGCGCTAGTCCTGGCCATTTCTGCGTGGCTGCAGCGGCCGCGCCGCGTCGCA
GAGGCCTTCCGTCGGCAGGGCGTGGACGGCCCGCCGCCGTCGTCGTTCCTGTCGGGTAAC
CTCTCGGAGATGCAGGCGAGGGCGGCCGCCGCGGCGGTGGCGGAGGCCGCCGGCGGCCGG
GACTTCCAGAAGGAAGGCTTCGACGACTACTGCATGAAGATCTTCCCCTACTTCGAGAAG
TGGAGGAAAGCCTACGGCGAGACGTACCTGTACTGGCTACGCCGCCGGCCGGCGCTGTAC
GTGTCGGACCCGGAGCTGATCCGCGAGATCGGGCGTTGCGTGTCGCTGGACATGGGCAAG
CCCACCTACCTGCAGAAGGGCCAGGAGCCCCTCTTTGGCCGCGGCGTCCTCAAGGCCAAC
GGCGCCGACTGGCATCGCCAGCGCAAGCTCATCGCCCCCGAGTTCTACATGGCAAAGGTC
AAGGGCATGGTGGAGCTGATGGTGGACGCGGCGCAGCCGCTGCTGACGTCGTGGGAGGAC
AAGGTCGCCGCCGCGCCGGGCGGCGTCGCGGAGCTCGACGTGGACGAGGACATCCGGAGC
TTCTCCTTCGACGTCATCTCCAGGGCCTGCTTCGGGGGCGACTACTCCAGGGGGCGGGAG
ATCTTCCTCCGGCTCAGGGCGCTGTCGGGCCTCATGTCCGAGACCAGCGTCATCTTCACC
ATCCCGTCGCTCAGGCACCTGCCCACGAGGAAGAACCGGAGGATCTGGAAGCTCACGCAC
GAGATCCGGTCGCTGATCCTGCAGCTGGCGAGCGAGCGCAAGGCGGCAGCGGCGGCGCTG
GCGCCCGGCCGCGACTTCCTGGGCTCCATCATCGACAGCAGCCGGGACCAGCCGCGCGCG
GACGACTTCGTCGTGGACAACTGCAAGAACATCTACTTCGCGGGCCACGAGACGAGCGCG
GTCACCGCGACGTGGTGCCTCATGCTCCTCGCCGCGCACCCGGAGTGGCAGGACCGCGCG
CGCGCCGAGGCGCTCGGCGTCTGCGGCGCCGCGGCGGCGCCGGACTTCGACGCGGTCGCC
AGGATGAAGACGCTGCACGCGGTGGTCCTGGAGACGCTGCGCCTCTTCCCGCCGTCGTCG
TTCGTGGTGCGTGAGGTGTTCCGCGACATGCAGCTCGGCAGGCTCCGCGCGCCCAAGGGC
ACCTACCTCTTCGTCCCCGTCTCCACCATGCACCACGACGCCGCCGTCTGGGGCCCCACC
GCTCGACGCTTCGACCCCGGCAGGTTCCGCGACGGCGTGGCGGCCGCGTGCAAGCACCCG
CAGGCGTTCATGCCCTTCGGCCTCGGCGCGCGCACCTGCCTCGGCCAGAACCTCGCGCTC
GTCGAGGTCAAGGTGCTCGTGGCGCTCGTCCTCGCGCGCTTCTCGCTTGCGCTGTCGCCG
GACTACAGGCACGCCCCCGCATTCCGGTTCATCATCGAGCCGGAGTTCGGGCTGCGCCTC
CTCCTGCGCCGCCGCCTCGGCCACTGA

Peptide Sequence

PEP ID

Zm00001d038511_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:6:158957756:158969636:1 gene:Zm00001d038511 transcript:Zm00001d038511_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:gibberellin 16,17-oxidase1 description: gibberellin 1617-oxidase1
Sequence

MAAMEYSSLLPLALLAGWCALAAALVLAISAWLQRPRRVAEAFRRQGVDGPPPSSFLSGN
LSEMQARAAAAAVAEAAGGRDFQKEGFDDYCMKIFPYFEKWRKAYGETYLYWLRRRPALY
VSDPELIREIGRCVSLDMGKPTYLQKGQEPLFGRGVLKANGADWHRQRKLIAPEFYMAKV
KGMVELMVDAAQPLLTSWEDKVAAAPGGVAELDVDEDIRSFSFDVISRACFGGDYSRGRE
IFLRLRALSGLMSETSVIFTIPSLRHLPTRKNRRIWKLTHEIRSLILQLASERKAAAAAL
APGRDFLGSIIDSSRDQPRADDFVVDNCKNIYFAGHETSAVTATWCLMLLAAHPEWQDRA
RAEALGVCGAAAAPDFDAVARMKTLHAVVLETLRLFPPSSFVVREVFRDMQLGRLRAPKG
TYLFVPVSTMHHDAAVWGPTARRFDPGRFRDGVAAACKHPQAFMPFGLGARTCLGQNLAL
VEVKVLVALVLARFSLALSPDYRHAPAFRFIIEPEFGLRLLLRRRLGH

Transcript Sequence

Transcript ID

Zm00001d038511_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:158957756:158969636:1 gene:Zm00001d038511 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:gibberellin 16,17-oxidase1 description: gibberellin 1617-oxidase1
Sequence

CGGCCGCCTAGGGAAGCGAGAAGCACACACAGAGAAGTTTCTTCCTAGAGAGAGAGGGAG
AGAGACAAGCGCGCGCATGGCCGCCATGGAGTACAGCAGCCTCTTGCCTCTGGCGCTGCT
GGCAGGGTGGTGCGCCCTCGCGGCGGCGCTAGTCCTGGCCATTTCTGCGTGGCTGCAGCG
GCCGCGCCGCGTCGCAGAGGCCTTCCGTCGGCAGGGCGTGGACGGCCCGCCGCCGTCGTC
GTTCCTGTCGGGTAACCTCTCGGAGATGCAGGCGAGGGCGGCCGCCGCGGCGGTGGCGGA
GGCCGCCGGCGGCCGGGACTTCCAGAAGGAAGGCTTCGACGACTACTGCATGAAGATCTT
CCCCTACTTCGAGAAGTGGAGGAAAGCCTACGGCGAGACGTACCTGTACTGGCTACGCCG
CCGGCCGGCGCTGTACGTGTCGGACCCGGAGCTGATCCGCGAGATCGGGCGTTGCGTGTC
GCTGGACATGGGCAAGCCCACCTACCTGCAGAAGGGCCAGGAGCCCCTCTTTGGCCGCGG
CGTCCTCAAGGCCAACGGCGCCGACTGGCATCGCCAGCGCAAGCTCATCGCCCCCGAGTT
CTACATGGCAAAGGTCAAGGGCATGGTGGAGCTGATGGTGGACGCGGCGCAGCCGCTGCT
GACGTCGTGGGAGGACAAGGTCGCCGCCGCGCCGGGCGGCGTCGCGGAGCTCGACGTGGA
CGAGGACATCCGGAGCTTCTCCTTCGACGTCATCTCCAGGGCCTGCTTCGGGGGCGACTA
CTCCAGGGGGCGGGAGATCTTCCTCCGGCTCAGGGCGCTGTCGGGCCTCATGTCCGAGAC
CAGCGTCATCTTCACCATCCCGTCGCTCAGGCACCTGCCCACGAGGAAGAACCGGAGGAT
CTGGAAGCTCACGCACGAGATCCGGTCGCTGATCCTGCAGCTGGCGAGCGAGCGCAAGGC
GGCAGCGGCGGCGCTGGCGCCCGGCCGCGACTTCCTGGGCTCCATCATCGACAGCAGCCG
GGACCAGCCGCGCGCGGACGACTTCGTCGTGGACAACTGCAAGAACATCTACTTCGCGGG
CCACGAGACGAGCGCGGTCACCGCGACGTGGTGCCTCATGCTCCTCGCCGCGCACCCGGA
GTGGCAGGACCGCGCGCGCGCCGAGGCGCTCGGCGTCTGCGGCGCCGCGGCGGCGCCGGA
CTTCGACGCGGTCGCCAGGATGAAGACGCTGCACGCGGTGGTCCTGGAGACGCTGCGCCT
CTTCCCGCCGTCGTCGTTCGTGGTGCGTGAGGTGTTCCGCGACATGCAGCTCGGCAGGCT
CCGCGCGCCCAAGGGCACCTACCTCTTCGTCCCCGTCTCCACCATGCACCACGACGCCGC
CGTCTGGGGCCCCACCGCTCGACGCTTCGACCCCGGCAGGTTCCGCGACGGCGTGGCGGC
CGCGTGCAAGCACCCGCAGGCGTTCATGCCCTTCGGCCTCGGCGCGCGCACCTGCCTCGG
CCAGAACCTCGCGCTCGTCGAGGTCAAGGTGCTCGTGGCGCTCGTCCTCGCGCGCTTCTC
GCTTGCGCTGTCGCCGGACTACAGGCACGCCCCCGCATTCCGGTTCATCATCGAGCCGGA
GTTCGGGCTGCGCCTCCTCCTGCGCCGCCGCCTCGGCCACTGA