Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d038485_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:6:158494145:158500979:1 gene:Zm00001d038485 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine/threonine-protein kinase STN8 chloroplastic
Sequence	ATGATTATTGACGCCATCGACTGGCTGGTGCTATCCACGACGGAAAAGGTGCGGAACATA TATGATGACCTCTTCGAGGTGCCGTCGAAGGTGATGCAGACGGCGATCACGCCGCGTGAC GCTACCAGCAGCATCAACTTCTATTGGAACTCCAAGGGCTCGTCGCTTGGGTACATACCG GTCTTCCACTTCTCCGAGGTGCTGCAGGCGGGCGCCGGCGTTGTTCGCCAGTTCAACATC AACATCAACGGCAAGCGGTTCACCTCCCATGATTATTACACACCACGGCACCTCGAAAGT GGCTACGTATACGGTACCAGACCTTACACCAACCAGATCCGGTATAACGTCTCCATCGTT AAGACAGACACGTCAACGCTCCCGCCTATCATCAACGCCGACGAGATTTTCATCGTCATC TCTACGACCAACGTTGGCACGGACTCGGAGGACGGTACGTGGGATGGACTGACGTGCAGC TATGCCATTTCTGATCCTCCAAAAATTACTGCCCTAAACATGTCCTTCAGTGGTCTGACC GGTGACATATCATCTGCTTTCGCAAATCTCAAGGCTGTCCAATCCTTCTATGCCGATAAT CCAGACCTTTGCACCAACGCCGGGGATTCATGTCAGACGGCGCCGCAAGGAAAGAGCAAG CTAGTCATCTACTACGTCGCTGTTCCTATGGCTCTGATCGTGGTGGCGTTGGCAGTACTG CTGTGTTGTCTTCTGCGGCGGCGAAAGACGCGAGGGCTAGCGGACGTCTCTGTGAAGCCC CGGGACAAGACTCCGACGAGCCTTGCTTCAATGGCGGCCGACGAACACAGACTTAGCTCG CTGCGGCTTGAGAACCGCCGGTTCACATACGAGGACCTAGAGATGATCACCGACAGCTTC AAGCGTGTCATTGGCCGGGGCGGCTTTGGATACGTCTACGAGGGCTTCTTGGAGGATGGC ACTCAGGTGGCGGTGAAGATGAGGTCTCAGTCGTCCAATCAGGGTGCCAAGGAGTTCCTC ACGGAGGCACAGATCTTGACACGGATCCATCACAAGAACCTTGTCTCCATGGTCGGCTAC TGCAAAGATGGGGTGTACATGGCGCTTGTCTACGAGTACATGTCAGAAGGATCCCTGCAG GAGCACATTGCAGGAAAACGCTTGACTTGGGGGCAGAGGCTTCGAATCGCATTGGAATCA GCGCAAGGGCTAGAGTATCTGCACAGGGGCTGCAACCCGCCTCTGATTCACAGGGACGTG AAGACCAGCAACATCCTACTGAACGCGAAACTGGAGGCCAAGGTTGCTGATTTCGGCATG TCAAAGGCTCTAGACCGCGACACCTATGCGTCCACGAACACTCTTGTTGGCACACCAGGA TACGTCGACCCAGAGTACCTGGAAACAATGCAGCCAAGCACCAAGAGCGACGTGTACAGT TTCGGCGTGGTGCTCCTGGAACTGGTCACAGGGAGACCTCCTATCCTGCACAGCCCACAG CCCACCAGCGTGATCCAGTGGGCACGGCAGCACCTGGCGCGCGGCGACATCGAGGTCGTG GTGGACGCGTCCATGGGAGGCAACCACGACGTCAACAGCGTGTGGAAAGCCGCGGAGGTC GCGCTCCAGTGCACCGAGCAGGCGTCGGCGCAGCGCCCCACCATGGGCGACGTGGTGGCG CAGCTCCTGGAGTGCCTCGACCTCGAGAAGGGCCGCTCCGCCAACGAAAGTTTCTGCGAC GGAGACGACAGCGGCTCCGCGACCGCGAGCTTGAGCCACAGCAGCGCATTTGTGACGGGG CGTATTTTTGGGACGGTGCCAATGGTGGAGACAGGCCCTGCCACGAGACGCGCGCTCGTG TGTGTCTCACTGTCTCCCCTGTCCCCTCTCCCGCGTGCTCGTCTACCTTCGGCTCCCCCA TGGGATGAGAGCGCCTTCCTCGCCATGGCCGCCTCCCACCTGCCCCCCGCAGCCACCCTC GTCAAGAAGTACCCAACTCTCCTCCACCCGTTCGGCGCCAAACCACACGCCCAGAGGCTG ATCTTCAGGTGCCGCGCGACCAGCAGCGAGGGTGCGGACGATGGCTGGGCGTCCTTTGTG GACGAGCTCAAGAGGTCGCTGCAGGTGGACCCGTCCGACGCGGTGATTAGCAACGCCGGC GCGGGTCTCACATCAAATAACGACCTCGTCACCGCGCTGCCACTGGAACCCTCCGCTGGT CCGGCTGCGGGAGACGCGACCACTGCCGCTGCCGGCGCGGTGAGCGAGCTCCTGGGCGTG GACGCGTCAGGCGCGGTGGCCACCCCCGACCGCCTCCTGAGCTCCCTGCTGCACCTGGAC GCGTCCAACCCGGTGGCGAGCGTGGCGGGCGGCGCGCTGTCTCGCCTGGACGCGCTCACG TCGGGACTGTCGGACGCGCAGCGGTGGGCGCTGTTCGGGTTCCTGGCCGCGACGTGGCTG TACCTGACCGCGCGGCCCGGGGTGCTGAGCGGCGCCGTGGACATGTACGTGCTGGCGCCG CTGCAGCTGGCGCTGGACAGCGTGCTGGGCCGGCGGAGCCTCAAGATGAGCGACTTCGTC GTCGGCGAGCGCATCGGGGAGGGCTCCTTCGGGGTGGTGTATGCCGGCGCCGTGGTGCCG AAGAACGGCGCCGTCGTGGAGGAGCGGTCCGGCAAGGCCAAGACGAGCCTCCAGAACGAC GACAGGTACAAGGAGAAGGTCATACTCAAGAAGATCAAGGTCATGACGGTGGGGGCGAAG GAGTGTGGGGACTACGAGGAGTGGTTCAACTACCGCGTGTCGAGAGCGGCGCCGGAGTCG TGCGCCGACTTCCTCGGGAGCTTCGTCGCCGACAAGAACAAGGCGGAGTTCGTCAAGGGC GGCAAGTGGCTCGTCTGGAAGTTTGAGGGCGACAGGACGCTGGCCAATTACCTGAGCGAG CGCGGCTTCCCGTCCAACCTGGAGCGTCTCATGTTCGGGCGCGTGCTGCAGGGCCTGGGC CCGCTGGAGCGCGAGGCGCTGGTGGTGAAGCAGGTGATGCGGCAGCTGATCACGTCGCTG AAGCGCATCCACGCCACGGGCATCGTGCACCGCGACATCAAGCCGTCCAACCTCGTCGTG ACCCGCCGCGGGCAGGTGAAGCTCATCGACTTCGGAGCCGCCACCGACCTCCGCATCGGC AAGAACTACGTGCCCGACCGCGCGCTGCTCGACCCGGACTACTGCCCGCCCGAGCTCTAC GTCCTCCCCGAGGAGACGCCCGAGCCCCCGCCGGAGCCCATCGCCGCCATCCTCTCCCCG ATCCTCTGGCAGCAGCAGCCATCTTTGCAGCTGAACAGCCCGGACCTGTTCGACATGTAC TCGGCGGGGATAGTGCTGATGCAGATGGCCATACCGACGCTGCGGACGCAGTCGGGGCTC AAGAACTTCAACGCCGAGCTCAGGTCCGCCGGCTACGACCTCAACAGGTGGCGGCAGAGC GCGCGGCGGAGGCCCGACCTGCAGATCCTGGACCTCGACTCCGGCCGAGGCTGGGACCTC GCCACCAAGCTCATCTCGGAGAGGGGCGCCAACGGCGGTGGCCGCCTGTCTGCCGCGGCC GCGTTGCGCCACCCGTATTTTCTCCTGGGTGGCGACCAGGCCGCGGCGGTGCTGTCCAAG TTCTCGCTCAGTAAATAG

Peptide Sequence

PEP ID	Zm00001d038485_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:6:158494145:158500979:1 gene:Zm00001d038485 transcript:Zm00001d038485_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine/threonine-protein kinase STN8 chloroplastic
Sequence	MIIDAIDWLVLSTTEKVRNIYDDLFEVPSKVMQTAITPRDATSSINFYWNSKGSSLGYIP VFHFSEVLQAGAGVVRQFNININGKRFTSHDYYTPRHLESGYVYGTRPYTNQIRYNVSIV KTDTSTLPPIINADEIFIVISTTNVGTDSEDGTWDGLTCSYAISDPPKITALNMSFSGLT GDISSAFANLKAVQSFYADNPDLCTNAGDSCQTAPQGKSKLVIYYVAVPMALIVVALAVL LCCLLRRRKTRGLADVSVKPRDKTPTSLASMAADEHRLSSLRLENRRFTYEDLEMITDSF KRVIGRGGFGYVYEGFLEDGTQVAVKMRSQSSNQGAKEFLTEAQILTRIHHKNLVSMVGY CKDGVYMALVYEYMSEGSLQEHIAGKRLTWGQRLRIALESAQGLEYLHRGCNPPLIHRDV KTSNILLNAKLEAKVADFGMSKALDRDTYASTNTLVGTPGYVDPEYLETMQPSTKSDVYS FGVVLLELVTGRPPILHSPQPTSVIQWARQHLARGDIEVVVDASMGGNHDVNSVWKAAEV ALQCTEQASAQRPTMGDVVAQLLECLDLEKGRSANESFCDGDDSGSATASLSHSSAFVTG RIFGTVPMVETGPATRRALVCVSLSPLSPLPRARLPSAPPWDESAFLAMAASHLPPAATL VKKYPTLLHPFGAKPHAQRLIFRCRATSSEGADDGWASFVDELKRSLQVDPSDAVISNAG AGLTSNNDLVTALPLEPSAGPAAGDATTAAAGAVSELLGVDASGAVATPDRLLSSLLHLD ASNPVASVAGGALSRLDALTSGLSDAQRWALFGFLAATWLYLTARPGVLSGAVDMYVLAP LQLALDSVLGRRSLKMSDFVVGERIGEGSFGVVYAGAVVPKNGAVVEERSGKAKTSLQND DRYKEKVILKKIKVMTVGAKECGDYEEWFNYRVSRAAPESCADFLGSFVADKNKAEFVKG GKWLVWKFEGDRTLANYLSERGFPSNLERLMFGRVLQGLGPLEREALVVKQVMRQLITSL KRIHATGIVHRDIKPSNLVVTRRGQVKLIDFGAATDLRIGKNYVPDRALLDPDYCPPELY VLPEETPEPPPEPIAAILSPILWQQQPSLQLNSPDLFDMYSAGIVLMQMAIPTLRTQSGL KNFNAELRSAGYDLNRWRQSARRRPDLQILDLDSGRGWDLATKLISERGANGGGRLSAAA ALRHPYFLLGGDQAAAVLSKFSLSK

Transcript Sequence

Transcript ID	Zm00001d038485_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:6:158494145:158500979:1 gene:Zm00001d038485 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine/threonine-protein kinase STN8 chloroplastic
Sequence	ATGATTATTGACGCCATCGACTGGCTGGTGCTATCCACGACGGAAAAGGTGCGGAACATA TATGATGACCTCTTCGAGGTGCCGTCGAAGGTGATGCAGACGGCGATCACGCCGCGTGAC GCTACCAGCAGCATCAACTTCTATTGGAACTCCAAGGGCTCGTCGCTTGGGTACATACCG GTCTTCCACTTCTCCGAGGTGCTGCAGGCGGGCGCCGGCGTTGTTCGCCAGTTCAACATC AACATCAACGGCAAGCGGTTCACCTCCCATGATTATTACACACCACGGCACCTCGAAAGT GGCTACGTATACGGTACCAGACCTTACACCAACCAGATCCGGTATAACGTCTCCATCGTT AAGACAGACACGTCAACGCTCCCGCCTATCATCAACGCCGACGAGATTTTCATCGTCATC TCTACGACCAACGTTGGCACGGACTCGGAGGACGGTACGTGGGATGGACTGACGTGCAGC TATGCCATTTCTGATCCTCCAAAAATTACTGCCCTAAACATGTCCTTCAGTGGTCTGACC GGTGACATATCATCTGCTTTCGCAAATCTCAAGGCTGTCCAATCCTTCTATGCCGATAAT CCAGACCTTTGCACCAACGCCGGGGATTCATGTCAGACGGCGCCGCAAGGAAAGAGCAAG CTAGTCATCTACTACGTCGCTGTTCCTATGGCTCTGATCGTGGTGGCGTTGGCAGTACTG CTGTGTTGTCTTCTGCGGCGGCGAAAGACGCGAGGGCTAGCGGACGTCTCTGTGAAGCCC CGGGACAAGACTCCGACGAGCCTTGCTTCAATGGCGGCCGACGAACACAGACTTAGCTCG CTGCGGCTTGAGAACCGCCGGTTCACATACGAGGACCTAGAGATGATCACCGACAGCTTC AAGCGTGTCATTGGCCGGGGCGGCTTTGGATACGTCTACGAGGGCTTCTTGGAGGATGGC ACTCAGGTGGCGGTGAAGATGAGGTCTCAGTCGTCCAATCAGGGTGCCAAGGAGTTCCTC ACGGAGGCACAGATCTTGACACGGATCCATCACAAGAACCTTGTCTCCATGGTCGGCTAC TGCAAAGATGGGGTGTACATGGCGCTTGTCTACGAGTACATGTCAGAAGGATCCCTGCAG GAGCACATTGCAGGAAAACGCTTGACTTGGGGGCAGAGGCTTCGAATCGCATTGGAATCA GCGCAAGGGCTAGAGTATCTGCACAGGGGCTGCAACCCGCCTCTGATTCACAGGGACGTG AAGACCAGCAACATCCTACTGAACGCGAAACTGGAGGCCAAGGTTGCTGATTTCGGCATG TCAAAGGCTCTAGACCGCGACACCTATGCGTCCACGAACACTCTTGTTGGCACACCAGGA TACGTCGACCCAGAGTACCTGGAAACAATGCAGCCAAGCACCAAGAGCGACGTGTACAGT TTCGGCGTGGTGCTCCTGGAACTGGTCACAGGGAGACCTCCTATCCTGCACAGCCCACAG CCCACCAGCGTGATCCAGTGGGCACGGCAGCACCTGGCGCGCGGCGACATCGAGGTCGTG GTGGACGCGTCCATGGGAGGCAACCACGACGTCAACAGCGTGTGGAAAGCCGCGGAGGTC GCGCTCCAGTGCACCGAGCAGGCGTCGGCGCAGCGCCCCACCATGGGCGACGTGGTGGCG CAGCTCCTGGAGTGCCTCGACCTCGAGAAGGGCCGCTCCGCCAACGAAAGTTTCTGCGAC GGAGACGACAGCGGCTCCGCGACCGCGAGCTTGAGCCACAGCAGCGCATTTGTGACGGGG CGTATTTTTGGGACGGTGCCAATGGTGGAGACAGGCCCTGCCACGAGACGCGCGCTCGTG TGTGTCTCACTGTCTCCCCTGTCCCCTCTCCCGCGTGCTCGTCTACCTTCGGCTCCCCCA TGGGATGAGAGCGCCTTCCTCGCCATGGCCGCCTCCCACCTGCCCCCCGCAGCCACCCTC GTCAAGAAGTACCCAACTCTCCTCCACCCGTTCGGCGCCAAACCACACGCCCAGAGGCTG ATCTTCAGGTGCCGCGCGACCAGCAGCGAGGGTGCGGACGATGGCTGGGCGTCCTTTGTG GACGAGCTCAAGAGGTCGCTGCAGGTGGACCCGTCCGACGCGGTGATTAGCAACGCCGGC GCGGGTCTCACATCAAATAACGACCTCGTCACCGCGCTGCCACTGGAACCCTCCGCTGGT CCGGCTGCGGGAGACGCGACCACTGCCGCTGCCGGCGCGGTGAGCGAGCTCCTGGGCGTG GACGCGTCAGGCGCGGTGGCCACCCCCGACCGCCTCCTGAGCTCCCTGCTGCACCTGGAC GCGTCCAACCCGGTGGCGAGCGTGGCGGGCGGCGCGCTGTCTCGCCTGGACGCGCTCACG TCGGGACTGTCGGACGCGCAGCGGTGGGCGCTGTTCGGGTTCCTGGCCGCGACGTGGCTG TACCTGACCGCGCGGCCCGGGGTGCTGAGCGGCGCCGTGGACATGTACGTGCTGGCGCCG CTGCAGCTGGCGCTGGACAGCGTGCTGGGCCGGCGGAGCCTCAAGATGAGCGACTTCGTC GTCGGCGAGCGCATCGGGGAGGGCTCCTTCGGGGTGGTGTATGCCGGCGCCGTGGTGCCG AAGAACGGCGCCGTCGTGGAGGAGCGGTCCGGCAAGGCCAAGACGAGCCTCCAGAACGAC GACAGGTACAAGGAGAAGGTCATACTCAAGAAGATCAAGGTCATGACGGTGGGGGCGAAG GAGTGTGGGGACTACGAGGAGTGGTTCAACTACCGCGTGTCGAGAGCGGCGCCGGAGTCG TGCGCCGACTTCCTCGGGAGCTTCGTCGCCGACAAGAACAAGGCGGAGTTCGTCAAGGGC GGCAAGTGGCTCGTCTGGAAGTTTGAGGGCGACAGGACGCTGGCCAATTACCTGAGCGAG CGCGGCTTCCCGTCCAACCTGGAGCGTCTCATGTTCGGGCGCGTGCTGCAGGGCCTGGGC CCGCTGGAGCGCGAGGCGCTGGTGGTGAAGCAGGTGATGCGGCAGCTGATCACGTCGCTG AAGCGCATCCACGCCACGGGCATCGTGCACCGCGACATCAAGCCGTCCAACCTCGTCGTG ACCCGCCGCGGGCAGGTGAAGCTCATCGACTTCGGAGCCGCCACCGACCTCCGCATCGGC AAGAACTACGTGCCCGACCGCGCGCTGCTCGACCCGGACTACTGCCCGCCCGAGCTCTAC GTCCTCCCCGAGGAGACGCCCGAGCCCCCGCCGGAGCCCATCGCCGCCATCCTCTCCCCG ATCCTCTGGCAGCAGCAGCCATCTTTGCAGCTGAACAGCCCGGACCTGTTCGACATGTAC TCGGCGGGGATAGTGCTGATGCAGATGGCCATACCGACGCTGCGGACGCAGTCGGGGCTC AAGAACTTCAACGCCGAGCTCAGGTCCGCCGGCTACGACCTCAACAGGTGGCGGCAGAGC GCGCGGCGGAGGCCCGACCTGCAGATCCTGGACCTCGACTCCGGCCGAGGCTGGGACCTC GCCACCAAGCTCATCTCGGAGAGGGGCGCCAACGGCGGTGGCCGCCTGTCTGCCGCGGCC GCGTTGCGCCACCCGTATTTTCTCCTGGGTGGCGACCAGGCCGCGGCGGTGCTGTCCAAG TTCTCGCTCAGTAAATAG