Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d038471_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:6:157965104:157967206:1 gene:Zm00001d038471 gene_biotype:protein_coding transcript_biotype:protein_coding description:U-box domain-containing protein 16
Sequence

ATGATGAGCGACGCGTGGCCGTCATCCCCCTACTCCTCGTCGGCGCCCGACGGGGAGGTC
CTGCGCTCCCTGCACCGCCTGGCGCGGGACCTGTCGGCGGCCGAGGCGCCGGCGCCGTTC
CTGCGGCCGGTCTTCGCAGCGGTGGCCAGGCGGGCGCGCCTGCTGGCCGCCGTGTTCGAC
GACCTGCTGCTGTGCGGCGCGGCCGCGGGCCCGCTGCTGCTGCTGCTGCTGCCGCGCTCC
GCGTCCCTGTGCCTCCGGGAGCTCCTGCTCGTGCTGCAGCGGTTCAAGGCGCTCGTGGCC
GACTGCGCCACGCGCAGCCGCACGCGCCTGCTGCTTCAGTCGGATGAGGTGGCCGCGCGC
GCGCGGGAGCTCCAGCACGACCTCGCCACGCTGATCGACCTGCTCCCCGCCGCGGAGCTC
GGGCTCGCCGACGACGTGTCGGACCTCCTGGCGCTCGCGTCGCGGCAGTGCCGCCGCGCG
GCGGCCCCGGAGCTGGAGCTGAAGGCGGGCGTGCTCGCGCTGATCCAGGAGGTGGAGCGG
GAGATCGTGCCGGAGCGGGAGAGGCTTGAGGGTATCCTGGAGGACGTGGGCATCAACGAC
CCCGCCAGCTGCAGCGACGAGATCGAGACCCTGGAGCGGGAGATCGGCGACCGCGTCGCC
GAGAGGTGGACGTCGTCGATGATCGCCCTCGTCGGCCTCCTCCGCTACGCCAAGTGCGTC
CTCTTCAGTGCCGCCACGCCGCGGCCCGTGGACTCCAAGGTGGATCTCGACGACGCGGAG
CCACCGTCGCCGCCGCCGGACTTCCGGTGCCCCATCTCCCTCGAGCTGATGGGCGACCCC
GTCGTGGCTTCTAGCGGTCAGACGTACGACCGTGACTCCATCACGCGCTGGTTCGGCTCT
GGCAAATCCACGTGCCCCAAGACCGGGCAAGTGCTGCTGAATCTGGAACTCGTGCCCAAC
AAGGCGCTCAAGAACTTGATATCGCGGTGGTGCCGGGAGAACGGCATCCCCATGGAGAGC
AGCGAGTCCGGGAAAGCCGAGCCGGCGCCGGCGGTAGGCGCGAACAAGGCCGCGCTGAAG
GCGGCGCGCATGACCGCGTCGTTCCTCGTGAAGAAGCTGTCGGCCTCTTTCTCCCCCGAG
GCGACGAAGCGCGTGGTCCAAGAGATCCGGCAGCTGGCCAAGTCCGGGTCCGACAACCGC
GCGTTCATCGGGGAGGCCGGCGCCGCGGGGCTCCTCGTGCCGCTGCTCCTGTCCGAGGAC
TCGGCTCTCCAGCTCAACGCCGTGACGGCGCTGCTCAACCTCTCCATCCTGGAGGCCAAC
AAGAAGCGCATCATGCACGCGGAGGGCGCCGTGGACGCGCTCTGCCACGTCATGGGCACG
GGCGCCACGTGGCGCGCCAAGGAGAACGCCGCGGCCACCGTGCTCAGCCTGGCGGCCGTC
CACGCGTACCGCCGCCGGCTCGGGCGGAACCCACGCGTCGTCGAGAGCGTCGTGCGGCTC
GCGCGCACGGGCCCCTCCAGCACCAAGAAGGACGCGCTCGCGGCGCTCCTGTGCCTGTCC
GCCGAGCGGGAGAACGTGCCGAGGATCGTCGAGGCCGGCGCCGCGGAGGCGGCGCTGGCC
GCGGTCGGCGAGGCCGAGGCCGAGGCCGCCGCGGCGGTGCTGGCGTCGCTGGCGAAGCGC
GGCGGCGCGGAGGCGATCGTCGCGCTGGACGGCGCCGTGGCGCGGCTGGTGAACGAGATG
CGGCGCGGCACGGAGTGGTCGCGGGAGTGCGCGGCGGCCGCGCTGGTGCTGCTGTGCAGG
CGCGCCGGCGCCGCCGCTGCGTCGCAGGTGGTGGCGGTCCAGGGCGTGGAGTGGGCCATC
TGGGAGCTGCTGGGCACCGGCACGGAGCGCGCGCGCCGCAAGGCCGCGTCGCTCGGCAGG
GCGTGCCGGCGGTGGGCGGCGGCCGCCAACGCGGAGCAGAGCACAGAGTGCCCTGCCGCC
GCCGATGCGCCGGCGCTCACGTCGGCGGCGTGA

Peptide Sequence

PEP ID

Zm00001d038471_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:6:157965104:157967206:1 gene:Zm00001d038471 transcript:Zm00001d038471_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:U-box domain-containing protein 16
Sequence

MMSDAWPSSPYSSSAPDGEVLRSLHRLARDLSAAEAPAPFLRPVFAAVARRARLLAAVFD
DLLLCGAAAGPLLLLLLPRSASLCLRELLLVLQRFKALVADCATRSRTRLLLQSDEVAAR
ARELQHDLATLIDLLPAAELGLADDVSDLLALASRQCRRAAAPELELKAGVLALIQEVER
EIVPERERLEGILEDVGINDPASCSDEIETLEREIGDRVAERWTSSMIALVGLLRYAKCV
LFSAATPRPVDSKVDLDDAEPPSPPPDFRCPISLELMGDPVVASSGQTYDRDSITRWFGS
GKSTCPKTGQVLLNLELVPNKALKNLISRWCRENGIPMESSESGKAEPAPAVGANKAALK
AARMTASFLVKKLSASFSPEATKRVVQEIRQLAKSGSDNRAFIGEAGAAGLLVPLLLSED
SALQLNAVTALLNLSILEANKKRIMHAEGAVDALCHVMGTGATWRAKENAAATVLSLAAV
HAYRRRLGRNPRVVESVVRLARTGPSSTKKDALAALLCLSAERENVPRIVEAGAAEAALA
AVGEAEAEAAAAVLASLAKRGGAEAIVALDGAVARLVNEMRRGTEWSRECAAAALVLLCR
RAGAAAASQVVAVQGVEWAIWELLGTGTERARRKAASLGRACRRWAAAANAEQSTECPAA
ADAPALTSAA

Transcript Sequence

Transcript ID

Zm00001d038471_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:157965104:157967206:1 gene:Zm00001d038471 gene_biotype:protein_coding transcript_biotype:protein_coding description:U-box domain-containing protein 16
Sequence

TCGGATTGAGATTGTAATCAGAATCGGATTGAGATTGTAATCAGAATCGGATTCCATCGT
TACATACTCAAGGCACATACAGCAGCACCAATGATGAGCGACGCGTGGCCGTCATCCCCC
TACTCCTCGTCGGCGCCCGACGGGGAGGTCCTGCGCTCCCTGCACCGCCTGGCGCGGGAC
CTGTCGGCGGCCGAGGCGCCGGCGCCGTTCCTGCGGCCGGTCTTCGCAGCGGTGGCCAGG
CGGGCGCGCCTGCTGGCCGCCGTGTTCGACGACCTGCTGCTGTGCGGCGCGGCCGCGGGC
CCGCTGCTGCTGCTGCTGCTGCCGCGCTCCGCGTCCCTGTGCCTCCGGGAGCTCCTGCTC
GTGCTGCAGCGGTTCAAGGCGCTCGTGGCCGACTGCGCCACGCGCAGCCGCACGCGCCTG
CTGCTTCAGTCGGATGAGGTGGCCGCGCGCGCGCGGGAGCTCCAGCACGACCTCGCCACG
CTGATCGACCTGCTCCCCGCCGCGGAGCTCGGGCTCGCCGACGACGTGTCGGACCTCCTG
GCGCTCGCGTCGCGGCAGTGCCGCCGCGCGGCGGCCCCGGAGCTGGAGCTGAAGGCGGGC
GTGCTCGCGCTGATCCAGGAGGTGGAGCGGGAGATCGTGCCGGAGCGGGAGAGGCTTGAG
GGTATCCTGGAGGACGTGGGCATCAACGACCCCGCCAGCTGCAGCGACGAGATCGAGACC
CTGGAGCGGGAGATCGGCGACCGCGTCGCCGAGAGGTGGACGTCGTCGATGATCGCCCTC
GTCGGCCTCCTCCGCTACGCCAAGTGCGTCCTCTTCAGTGCCGCCACGCCGCGGCCCGTG
GACTCCAAGGTGGATCTCGACGACGCGGAGCCACCGTCGCCGCCGCCGGACTTCCGGTGC
CCCATCTCCCTCGAGCTGATGGGCGACCCCGTCGTGGCTTCTAGCGGTCAGACGTACGAC
CGTGACTCCATCACGCGCTGGTTCGGCTCTGGCAAATCCACGTGCCCCAAGACCGGGCAA
GTGCTGCTGAATCTGGAACTCGTGCCCAACAAGGCGCTCAAGAACTTGATATCGCGGTGG
TGCCGGGAGAACGGCATCCCCATGGAGAGCAGCGAGTCCGGGAAAGCCGAGCCGGCGCCG
GCGGTAGGCGCGAACAAGGCCGCGCTGAAGGCGGCGCGCATGACCGCGTCGTTCCTCGTG
AAGAAGCTGTCGGCCTCTTTCTCCCCCGAGGCGACGAAGCGCGTGGTCCAAGAGATCCGG
CAGCTGGCCAAGTCCGGGTCCGACAACCGCGCGTTCATCGGGGAGGCCGGCGCCGCGGGG
CTCCTCGTGCCGCTGCTCCTGTCCGAGGACTCGGCTCTCCAGCTCAACGCCGTGACGGCG
CTGCTCAACCTCTCCATCCTGGAGGCCAACAAGAAGCGCATCATGCACGCGGAGGGCGCC
GTGGACGCGCTCTGCCACGTCATGGGCACGGGCGCCACGTGGCGCGCCAAGGAGAACGCC
GCGGCCACCGTGCTCAGCCTGGCGGCCGTCCACGCGTACCGCCGCCGGCTCGGGCGGAAC
CCACGCGTCGTCGAGAGCGTCGTGCGGCTCGCGCGCACGGGCCCCTCCAGCACCAAGAAG
GACGCGCTCGCGGCGCTCCTGTGCCTGTCCGCCGAGCGGGAGAACGTGCCGAGGATCGTC
GAGGCCGGCGCCGCGGAGGCGGCGCTGGCCGCGGTCGGCGAGGCCGAGGCCGAGGCCGCC
GCGGCGGTGCTGGCGTCGCTGGCGAAGCGCGGCGGCGCGGAGGCGATCGTCGCGCTGGAC
GGCGCCGTGGCGCGGCTGGTGAACGAGATGCGGCGCGGCACGGAGTGGTCGCGGGAGTGC
GCGGCGGCCGCGCTGGTGCTGCTGTGCAGGCGCGCCGGCGCCGCCGCTGCGTCGCAGGTG
GTGGCGGTCCAGGGCGTGGAGTGGGCCATCTGGGAGCTGCTGGGCACCGGCACGGAGCGC
GCGCGCCGCAAGGCCGCGTCGCTCGGCAGGGCGTGCCGGCGGTGGGCGGCGGCCGCCAAC
GCGGAGCAGAGCACAGAGTGCCCTGCCGCCGCCGATGCGCCGGCGCTCACGTCGGCGGCG
TGA