Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d038377_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:6:155916704:155920144:1 gene:Zm00001d038377 gene_biotype:protein_coding transcript_biotype:protein_coding description:PIF / Ping-Pong family of plant transposases
Sequence

ATGGCTCCTGTGCGAGGTGCCAAGAAGAGGAAGCGGCCGGAGAAGCCCGCCCCGGCGCCT
ACTCCAGGGTTGCCGCTGCCGCCGCTGCCGGACGGTAGCGATTGGTGGGGCGTCTTCTAC
CGAAGGGTTGCAGGTCGCCTCTCCTCTCCCTACCCTCCTTCCTTGCCTGCATCGCTGTGC
TCTTTAGAGTGCGCGCTTCCTTGCTCCTTTCGTCGCTGTAAGCTTGATCAACGTGGCATG
GTAGGGAAGTATCTAGTTCTTGGACATTCCCCTTTTCCAAGAGAACACCAGAACATGGAG
TCTGTCCTGAAGATGTCAAGAAGAACCTTCGACTACATCTGCTCACTTGTTAAGAAGGAC
CTGACAACAAAGACATACGGTTTCAGAAACTTCAGGTTTGGTGACAAGAAAGTCCTTGGG
GTGGAGGATCAGGTGGCGGTGGCTCTGATGAGGCTGACTACTGGTGAGTCGCTGCAGAAC
ATAGGAATGTGGTTTGGCATGAACCACTCTGCCATCTCGAACATCACATGGCGGTTCATC
GAGTCCGTGGAGGAGCGTGCCATCTGCCACCTGAAATGGCCGAGCCCTGAGGAGATGGCG
ACCATCAAGACAAGGTTTGACAAGGTTTACGGGCTCCCTAACTGCTGCGGCGCCATTGAC
ACCACACACATCCTCATGTGTTCCTCGGCTCAGCCCAACAGCAAGGTCTGGCTGGACAAT
GAGAACAAAAACAGCATGGTGCTGCAGGCCGTTGTGGATGCAGACTTGCGGTTCAGAGAC
GTCGTCAGTGGCTGGCCTGGGAGCATGGACGACACGTGCATCCTTCGCACTTCAGGCCTG
TACAGGTTGTGTGAGAAGGGCCTCAGGCTTGGGGGGCAGATGGAGCTTCCCGGAGGTTCC
GCGGTTAGGGAGTACCTAGTCGGAGATGCAAGCTACCCGCTACTTCCCTGGCTCATGACC
CCGTACCGGGAACATGGCCTCCAGGCGGCCAAGGTGGAATTCAACAAGCGGCACACGGCC
GCGGCGGCGGTGGTGCAGACCGCATTGGCGACGCTCAAAGGGAGGTGGCGTGTCATTCAG
GGAGAGCTGTGGAGGCCTGACAAACACCGGCTGCCACGGATCATCTTTGTCTGCTGCTTG
ATAACCAACATCATCATCGACATGGAAGGGACTCCAAGCAGAGACGAACTGGTTTCAGGC
AACCATGACCTTGGCTACAAGCAGCAGTTCAGTGACGCCGCAGATGACAATGCAATCAAG
CAGAGAGACGACCTGTCTCGACATGTCGACAATGCAATCAAGCGGAGAGACGATCTGTCT
CACCATGTCACCGCCGGCGAGTAA

Peptide Sequence

PEP ID

Zm00001d038377_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:6:155916704:155920144:1 gene:Zm00001d038377 transcript:Zm00001d038377_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:PIF / Ping-Pong family of plant transposases
Sequence

MAPVRGAKKRKRPEKPAPAPTPGLPLPPLPDGSDWWGVFYRRVAGRLSSPYPPSLPASLC
SLECALPCSFRRCKLDQRGMVGKYLVLGHSPFPREHQNMESVLKMSRRTFDYICSLVKKD
LTTKTYGFRNFRFGDKKVLGVEDQVAVALMRLTTGESLQNIGMWFGMNHSAISNITWRFI
ESVEERAICHLKWPSPEEMATIKTRFDKVYGLPNCCGAIDTTHILMCSSAQPNSKVWLDN
ENKNSMVLQAVVDADLRFRDVVSGWPGSMDDTCILRTSGLYRLCEKGLRLGGQMELPGGS
AVREYLVGDASYPLLPWLMTPYREHGLQAAKVEFNKRHTAAAAVVQTALATLKGRWRVIQ
GELWRPDKHRLPRIIFVCCLITNIIIDMEGTPSRDELVSGNHDLGYKQQFSDAADDNAIK
QRDDLSRHVDNAIKRRDDLSHHVTAGE

Transcript Sequence

Transcript ID

Zm00001d038377_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:155916704:155920144:1 gene:Zm00001d038377 gene_biotype:protein_coding transcript_biotype:protein_coding description:PIF / Ping-Pong family of plant transposases
Sequence

ATGGCTCCTGTGCGAGGTGCCAAGAAGAGGAAGCGGCCGGAGAAGCCCGCCCCGGCGCCT
ACTCCAGGGTTGCCGCTGCCGCCGCTGCCGGACGGTAGCGATTGGTGGGGCGTCTTCTAC
CGAAGGGTTGCAGGTCGCCTCTCCTCTCCCTACCCTCCTTCCTTGCCTGCATCGCTGTGC
TCTTTAGAGTGCGCGCTTCCTTGCTCCTTTCGTCGCTGTAAGCTTGATCAACGTGGCATG
GTAGGGAAGTATCTAGTTCTTGGACATTCCCCTTTTCCAAGAGAACACCAGAACATGGAG
TCTGTCCTGAAGATGTCAAGAAGAACCTTCGACTACATCTGCTCACTTGTTAAGAAGGAC
CTGACAACAAAGACATACGGTTTCAGAAACTTCAGGTTTGGTGACAAGAAAGTCCTTGGG
GTGGAGGATCAGGTGGCGGTGGCTCTGATGAGGCTGACTACTGGTGAGTCGCTGCAGAAC
ATAGGAATGTGGTTTGGCATGAACCACTCTGCCATCTCGAACATCACATGGCGGTTCATC
GAGTCCGTGGAGGAGCGTGCCATCTGCCACCTGAAATGGCCGAGCCCTGAGGAGATGGCG
ACCATCAAGACAAGGTTTGACAAGGTTTACGGGCTCCCTAACTGCTGCGGCGCCATTGAC
ACCACACACATCCTCATGTGTTCCTCGGCTCAGCCCAACAGCAAGGTCTGGCTGGACAAT
GAGAACAAAAACAGCATGGTGCTGCAGGCCGTTGTGGATGCAGACTTGCGGTTCAGAGAC
GTCGTCAGTGGCTGGCCTGGGAGCATGGACGACACGTGCATCCTTCGCACTTCAGGCCTG
TACAGGTTGTGTGAGAAGGGCCTCAGGCTTGGGGGGCAGATGGAGCTTCCCGGAGGTTCC
GCGGTTAGGGAGTACCTAGTCGGAGATGCAAGCTACCCGCTACTTCCCTGGCTCATGACC
CCGTACCGGGAACATGGCCTCCAGGCGGCCAAGGTGGAATTCAACAAGCGGCACACGGCC
GCGGCGGCGGTGGTGCAGACCGCATTGGCGACGCTCAAAGGGAGGTGGCGTGTCATTCAG
GGAGAGCTGTGGAGGCCTGACAAACACCGGCTGCCACGGATCATCTTTGTCTGCTGCTTG
ATAACCAACATCATCATCGACATGGAAGGGACTCCAAGCAGAGACGAACTGGTTTCAGGC
AACCATGACCTTGGCTACAAGCAGCAGTTCAGTGACGCCGCAGATGACAATGCAATCAAG
CAGAGAGACGACCTGTCTCGACATGTCGACAATGCAATCAAGCGGAGAGACGATCTGTCT
CACCATGTCACCGCCGGCGAGTAAACACTCACCGTCACCCTTTGCTTTTTGCACCCATTA
ATATAAAAAACATGGATACAAAATTGTAAGGTGAATTTTTGGCAGATTCCAATAATGTTT
TGGTTTCAGGGAGACATTACCATCTTAAACAAAGTGTAGCCCTAATTTGTTAAGTTACAA
CATGCCATCAAGCATGCTATTTTACCGTTT