Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d038371_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:6:155675735:155678583:-1 gene:Zm00001d038371 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative laccase family protein

Sequence

ATGGCCGGCGGCCGTCGTCTCTCCCCTGCGTGCCTCCTTCGTCGTCTCACCGTCGCCCTC
GTGGTCCTCACCGCCCTGCCGGAGCTCGCCGCTGCCCGCACCCGCCGCTACACGTTCAAT
GTGACTATGGCAACGGTGACGCGCCTGTGCGTGACGAAGAGCGTCCCCACGGTGAACGGG
CGGTTCCCGGGGCCGAGGCTCGTCGTGCGCGAGGGAGACCGACTCGTGGTGCAGGTCCAC
AACAACATCAACAGCAACGTAACGTTCCACTGGCACGGCGTCCGGCAGCTGCGCAGCGGG
TGGGCGGACGGGCCGTCCTACATCACGCAGTGCCCGATCCGGCCCGGCCAGAGCTACGCC
TACGACTTCCGCATCGTGGGGCAGCGCGGCACGCTCTGGTGGCACGCGCACTTCTCCTGG
CTCCGCGCCACGCTCTACGGCCCGCTAGTCATCCTCCCGCCGCGCGGCGTCCCCTACCCG
TTCCCAAAGCCCCACAGACAAGTCACCCTCATGCTCGGTGAGTGGTTCAACGCGGACCCG
GAGGCCGTCATCAAGCAGGCGCTGCAGACCGGCGGGGCCCCGAACGTCTCCGACGCCTAC
ACCTTCAACGGCCTGCCTGGCCCCACCTACAACTGCTCCTCCGCCGCCGGCGACGACACG
TTCAGGCTGCGGGTGAGGCCCGGCCGGACGTACTTGCTGCGCCTCGTCAACGCGGCGCTC
AACGACGAGCTCTTCTTCGCGGTGGCCAACCACACGCTGACGGTGGTGCAGGCGGACGCC
AGCTACGTCAAGCCGTTCGCGGCCGCCACGCTGGTCATCTCGCCGGGGCAGACCATGGAC
GTGCTCCTCACCGCCTCCGCCTCCGCCGCCGCCGCCGCCCCGTCGTCCGCCTTCGCCATC
GCCGTCGCGCCCTACACCAACACCGTCGGCACGTTCGACAACACCACCGCCGTCGCCGCC
GTCGAGTACGGCCCGCACCAGTCCGCCGCGGCGCCGCTCCGGAGCCTGCCCTTGCCGGCG
CTCCCGCGGTACAACGACACGGCCGCGGTGGCCAACTTCTCGGCCATGTTCCGGAGCCTC
GCGAGCGCGCGGTACCCGGCGCGCGTGCCGCGGACCGTGGACCGCAGGTTCTTCTTCACC
GTCGGGCTGGGCGCGGACCCGTGCCGGAGCCGCGTCAACGGCACGTGCCAGGGCCCCAAC
GGCACCAGGTTCGCCGCGTCCATGAACAACGTGTCCTTCGCCATGCCCAGGACCGCCTCC
CTCCTGCAGGCGCACTACCAGCGCCGCTACAGCGGCGTGCTCGCGGCCAACTTCCCCGCC
GTGCCGCCCACGCGCTTCGACTACACCGGCGCGCCGCCCAACAACACGTTCGTCACCCAC
GGCACCCGGGTCGTGCCGCTCAGCTTCAACACCACCGTCGAGGTGGTGCTGCAGGACACC
AGCGTCCTGGGCGCCGAGAGCCACCCGCTGCACCTGCACGGCTACGACTTCTTCGTCGTC
GGCACGGGCTTCGGCAACTACGACGCCACCAACGACACCGCCAGGTACAACCTCGTCGAC
CCGGTGCAGCGGAACACCGTCAGCGTCCCCACCGCCGGCTGGGTCGCCATCCGATTCGTC
GCCGACAACCCCGGCGTGTGGATCATGCATTGCCACCTGGACGTGCACCTGACCTGGGGT
CTGGCAATGGCGTGGCTCGTCAACGACGGGCCGCTGCCCAACCAGAAGCTGCCACCTCCA
CCGTCCGATATCCCCAGGTGTTGA

Peptide Sequence

PEP ID

Zm00001d038371_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:6:155675735:155678583:-1 gene:Zm00001d038371 transcript:Zm00001d038371_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative laccase family protein

Sequence

MAGGRRLSPACLLRRLTVALVVLTALPELAAARTRRYTFNVTMATVTRLCVTKSVPTVNG
RFPGPRLVVREGDRLVVQVHNNINSNVTFHWHGVRQLRSGWADGPSYITQCPIRPGQSYA
YDFRIVGQRGTLWWHAHFSWLRATLYGPLVILPPRGVPYPFPKPHRQVTLMLGEWFNADP
EAVIKQALQTGGAPNVSDAYTFNGLPGPTYNCSSAAGDDTFRLRVRPGRTYLLRLVNAAL
NDELFFAVANHTLTVVQADASYVKPFAAATLVISPGQTMDVLLTASASAAAAAPSSAFAI
AVAPYTNTVGTFDNTTAVAAVEYGPHQSAAAPLRSLPLPALPRYNDTAAVANFSAMFRSL
ASARYPARVPRTVDRRFFFTVGLGADPCRSRVNGTCQGPNGTRFAASMNNVSFAMPRTAS
LLQAHYQRRYSGVLAANFPAVPPTRFDYTGAPPNNTFVTHGTRVVPLSFNTTVEVVLQDT
SVLGAESHPLHLHGYDFFVVGTGFGNYDATNDTARYNLVDPVQRNTVSVPTAGWVAIRFV
ADNPGVWIMHCHLDVHLTWGLAMAWLVNDGPLPNQKLPPPPSDIPRC

Transcript Sequence

Transcript ID

Zm00001d038371_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:155675735:155678583:-1 gene:Zm00001d038371 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative laccase family protein

Sequence

ACCACTTGGATTGGCGTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTTGCTTCAGTTCGGTTCGGACACAGCAACTAGCTAGCTGATCGATCGAGAGCAAGCAAT
GGCCGGCGGCCGTCGTCTCTCCCCTGCGTGCCTCCTTCGTCGTCTCACCGTCGCCCTCGT
GGTCCTCACCGCCCTGCCGGAGCTCGCCGCTGCCCGCACCCGCCGCTACACGTTCAATGT
GACTATGGCAACGGTGACGCGCCTGTGCGTGACGAAGAGCGTCCCCACGGTGAACGGGCG
GTTCCCGGGGCCGAGGCTCGTCGTGCGCGAGGGAGACCGACTCGTGGTGCAGGTCCACAA
CAACATCAACAGCAACGTAACGTTCCACTGGCACGGCGTCCGGCAGCTGCGCAGCGGGTG
GGCGGACGGGCCGTCCTACATCACGCAGTGCCCGATCCGGCCCGGCCAGAGCTACGCCTA
CGACTTCCGCATCGTGGGGCAGCGCGGCACGCTCTGGTGGCACGCGCACTTCTCCTGGCT
CCGCGCCACGCTCTACGGCCCGCTAGTCATCCTCCCGCCGCGCGGCGTCCCCTACCCGTT
CCCAAAGCCCCACAGACAAGTCACCCTCATGCTCGGTGAGTGGTTCAACGCGGACCCGGA
GGCCGTCATCAAGCAGGCGCTGCAGACCGGCGGGGCCCCGAACGTCTCCGACGCCTACAC
CTTCAACGGCCTGCCTGGCCCCACCTACAACTGCTCCTCCGCCGCCGGCGACGACACGTT
CAGGCTGCGGGTGAGGCCCGGCCGGACGTACTTGCTGCGCCTCGTCAACGCGGCGCTCAA
CGACGAGCTCTTCTTCGCGGTGGCCAACCACACGCTGACGGTGGTGCAGGCGGACGCCAG
CTACGTCAAGCCGTTCGCGGCCGCCACGCTGGTCATCTCGCCGGGGCAGACCATGGACGT
GCTCCTCACCGCCTCCGCCTCCGCCGCCGCCGCCGCCCCGTCGTCCGCCTTCGCCATCGC
CGTCGCGCCCTACACCAACACCGTCGGCACGTTCGACAACACCACCGCCGTCGCCGCCGT
CGAGTACGGCCCGCACCAGTCCGCCGCGGCGCCGCTCCGGAGCCTGCCCTTGCCGGCGCT
CCCGCGGTACAACGACACGGCCGCGGTGGCCAACTTCTCGGCCATGTTCCGGAGCCTCGC
GAGCGCGCGGTACCCGGCGCGCGTGCCGCGGACCGTGGACCGCAGGTTCTTCTTCACCGT
CGGGCTGGGCGCGGACCCGTGCCGGAGCCGCGTCAACGGCACGTGCCAGGGCCCCAACGG
CACCAGGTTCGCCGCGTCCATGAACAACGTGTCCTTCGCCATGCCCAGGACCGCCTCCCT
CCTGCAGGCGCACTACCAGCGCCGCTACAGCGGCGTGCTCGCGGCCAACTTCCCCGCCGT
GCCGCCCACGCGCTTCGACTACACCGGCGCGCCGCCCAACAACACGTTCGTCACCCACGG
CACCCGGGTCGTGCCGCTCAGCTTCAACACCACCGTCGAGGTGGTGCTGCAGGACACCAG
CGTCCTGGGCGCCGAGAGCCACCCGCTGCACCTGCACGGCTACGACTTCTTCGTCGTCGG
CACGGGCTTCGGCAACTACGACGCCACCAACGACACCGCCAGGTACAACCTCGTCGACCC
GGTGCAGCGGAACACCGTCAGCGTCCCCACCGCCGGCTGGGTCGCCATCCGATTCGTCGC
CGACAACCCCGGCGTGTGGATCATGCATTGCCACCTGGACGTGCACCTGACCTGGGGTCT
GGCAATGGCGTGGCTCGTCAACGACGGGCCGCTGCCCAACCAGAAGCTGCCACCTCCACC
GTCCGATATCCCCAGGTGTTGATACAATCACGAGACATTAGTCTGCAGTGGTTTTGATCC
GTGCAATGCTCAATGCACGCGCACATGGCGGAACCGACTCAAATCGTTTGGCCTGTGCAA
CGCGAATTTTGTGATGATGTCTGGTTTTGTCGCTGCCCTGTTTCGGTTTCGGAGACATAC
AAGATCCGTAAAAGCAAGTTTATTAGGGGTCATGTGTTGTTGCGCCATTATTCTTTTTTT
TCGATTGTTTCATCGCAACTTTTGTTTTTTTATGCTGGACATTGTTAGTGCGTCCAGTGT
GTAAGGTATATGTTACATATATAATGTATCAGTCGATTGGACCAG