Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d038336_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:6:154799581:154805757:1 gene:Zm00001d038336 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGGGGGGTCTCTGCTCGAAGGTCTCAGCTGTAGACAAGTCACCGAGCGACACTGCGTTT
GGCCGGAACCAGGTCACCGATCATGATCCGGGGGCGTCGTTGGAGTTGGAGAAGCAGCCG
GTGTCCGGAAAGGCAGCTGCACCGGCAAAGCGGCTGGACGAGCAGCAGCAGCAGCATCAG
TCTTTCTCGTTCCTAGAGAGCGTCGTCCCTGGGGTTGCTTTTCATGCCCGGGCTAATGCT
AGCGGCGAAACGGGGCCCAGGACCTCGCCGCAACTGACCAGATCGCTGTCGCAGAGGGAT
GGCGTGGGCAAGGCAAAAGCCGGTGCTGACAAGGTTTCAGAAGTGAGCTCAATTTTAGGT
AGAGCTAGCACTGTTGGGCTTGAAAAGGCAGTGGAGGTTCTGGACACACTTGGCAGTAGC
ATGACAAGTTTTAATTCTAGCCGTGGTTTTGTGTCAAGTTCTGCAGCAAAGGGAAACAAA
ATATCCATGCTGGCTTTTGAGATGGCAAATACTATAGTTAAAGGCTCTAATCTGATGCAT
TCTTTATCGGAGCTTAGCATAAAGCATCTGAAGGAGGTGGTGCTTCATTCAGAACTTCAG
AAGGTGTTCAACACCTTATATCCAAAGATTTTGATGAACTGCTCAAGATGGCAGCTGCCG
ACAAAAGGAGACAGTCTGGATATACTGAAGCAGGCAGTGAAGGTCCAGAGTAAGCATGTT
AAAAGTATGAAAAAGAAATCACTTTGGTCCAAGAATTTGGAAGAGGACCCTGCTCAAGCT
GCAAGCAGCCAAGCATCCTTTCCTATCATTGTATTTCAAGGTTTAAATATTACATTTTTT
TCTCAGGTGGTGGTAAAGCTTGTAGATATTGTCCACTTCTTACATTTGGAGATATATAAC
GCCTTCGGTCATCCTGACAAGGAAGAGCCACAAGAACGTGGCAAACACCATAATAGATTG
GGACCAGCAGGCCTTGCGTTGCATTACGCTAGTATCATCAATCAGATTGACAATCTTGTT
TCTCAATCATGTGCAATGCCTCCAAATGCAAGGGATGCATTATATCATAGTTTACCACCT
ATCATCAAATCTGCTCTCCGCTATAAACTACAATCGTTTGAAGTCAAGGAAGAGCTTACA
GCTTCTCAGGTCAAAGCAGAAATGGAGAAGACTTTGTGGTGGCTTGTCCCTTTGGCTAGT
AACACAAATAAGGCATACCATGGCTTCGGTTGGGTTGGAGAGTTGGCAAATACAGGATCT
GAAATGAACTGCAAGCTATCAGGGCAGAAGGACATGTCCCGAATCGAGACATTGTATCAT
GCTGACAAGGAGAAGACTGAAGCACTTATCCTGGAGCTGGTCGTGTGGCTTCATCATCTT
ATCAGTAAATCAAGACACGCCAGTGGAGGTGTAAGGTCTCCCATCAAATCTCCAGTCAGC
TCACCAACACAAAATGGCGCTGCAATCACACTGTTGCCGGGCAAAACGAAAATTTCATCA
CCGATTCTCACCCAAGAGGATCAGGATATGCTAAGGGATGTCAAGTACAGGAAATTTGTC
CCAGGGATAAGCAAAAGTCAAGAGTTTGACACAAAGTCAAGTCACAGCAAACGGAGTAGG
TTGAGCAAGAGCAACAGCCAGTCCCCAGCTAGTGGCAACAGGAAATAA

Peptide Sequence

PEP ID

Zm00001d038336_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:6:154799581:154805757:1 gene:Zm00001d038336 transcript:Zm00001d038336_T001 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MGGLCSKVSAVDKSPSDTAFGRNQVTDHDPGASLELEKQPVSGKAAAPAKRLDEQQQQHQ
SFSFLESVVPGVAFHARANASGETGPRTSPQLTRSLSQRDGVGKAKAGADKVSEVSSILG
RASTVGLEKAVEVLDTLGSSMTSFNSSRGFVSSSAAKGNKISMLAFEMANTIVKGSNLMH
SLSELSIKHLKEVVLHSELQKVFNTLYPKILMNCSRWQLPTKGDSLDILKQAVKVQSKHV
KSMKKKSLWSKNLEEDPAQAASSQASFPIIVFQGLNITFFSQVVVKLVDIVHFLHLEIYN
AFGHPDKEEPQERGKHHNRLGPAGLALHYASIINQIDNLVSQSCAMPPNARDALYHSLPP
IIKSALRYKLQSFEVKEELTASQVKAEMEKTLWWLVPLASNTNKAYHGFGWVGELANTGS
EMNCKLSGQKDMSRIETLYHADKEKTEALILELVVWLHHLISKSRHASGGVRSPIKSPVS
SPTQNGAAITLLPGKTKISSPILTQEDQDMLRDVKYRKFVPGISKSQEFDTKSSHSKRSR
LSKSNSQSPASGNRK

Transcript Sequence

Transcript ID

Zm00001d038336_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:154799581:154805757:1 gene:Zm00001d038336 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

GGAAAATCCCTCTTCCACTGACCGCCACCGTCGCCGCCGAACGCATCTAGTCAGCTTCCA
CTGGAGCACTCCACCCCCGAATGCTTCTCTCGCAGTCGTTGCCCTCCTCCCCTACCCCAT
ATAGTAAAACACGTTCGCAGATCCATCCGGACTTGCCAATAAAGACCAAGCATTATTGGA
TGGACTCCGTCACTGGCTGCGACGGCGGCAAGAAATCGGATTAGGACGAGTGTAGGGGGT
ACTTGTCTTAGGAAAGGGGATGGGGGGTCTCTGCTCGAAGGTCTCAGCTGTAGACAAGTC
ACCGAGCGACACTGCGTTTGGCCGGAACCAGGTCACCGATCATGATCCGGGGGCGTCGTT
GGAGTTGGAGAAGCAGCCGGTGTCCGGAAAGGCAGCTGCACCGGCAAAGCGGCTGGACGA
GCAGCAGCAGCAGCATCAGTCTTTCTCGTTCCTAGAGAGCGTCGTCCCTGGGGTTGCTTT
TCATGCCCGGGCTAATGCTAGCGGCGAAACGGGGCCCAGGACCTCGCCGCAACTGACCAG
ATCGCTGTCGCAGAGGGATGGCGTGGGCAAGGCAAAAGCCGGTGCTGACAAGGTTTCAGA
AGTGAGCTCAATTTTAGGTAGAGCTAGCACTGTTGGGCTTGAAAAGGCAGTGGAGGTTCT
GGACACACTTGGCAGTAGCATGACAAGTTTTAATTCTAGCCGTGGTTTTGTGTCAAGTTC
TGCAGCAAAGGGAAACAAAATATCCATGCTGGCTTTTGAGATGGCAAATACTATAGTTAA
AGGCTCTAATCTGATGCATTCTTTATCGGAGCTTAGCATAAAGCATCTGAAGGAGGTGGT
GCTTCATTCAGAACTTCAGAAGGTGTTCAACACCTTATATCCAAAGATTTTGATGAACTG
CTCAAGATGGCAGCTGCCGACAAAAGGAGACAGTCTGGATATACTGAAGCAGGCAGTGAA
GGTCCAGAGTAAGCATGTTAAAAGTATGAAAAAGAAATCACTTTGGTCCAAGAATTTGGA
AGAGGACCCTGCTCAAGCTGCAAGCAGCCAAGCATCCTTTCCTATCATTGTATTTCAAGG
TTTAAATATTACATTTTTTTCTCAGGTGGTGGTAAAGCTTGTAGATATTGTCCACTTCTT
ACATTTGGAGATATATAACGCCTTCGGTCATCCTGACAAGGAAGAGCCACAAGAACGTGG
CAAACACCATAATAGATTGGGACCAGCAGGCCTTGCGTTGCATTACGCTAGTATCATCAA
TCAGATTGACAATCTTGTTTCTCAATCATGTGCAATGCCTCCAAATGCAAGGGATGCATT
ATATCATAGTTTACCACCTATCATCAAATCTGCTCTCCGCTATAAACTACAATCGTTTGA
AGTCAAGGAAGAGCTTACAGCTTCTCAGGTCAAAGCAGAAATGGAGAAGACTTTGTGGTG
GCTTGTCCCTTTGGCTAGTAACACAAATAAGGCATACCATGGCTTCGGTTGGGTTGGAGA
GTTGGCAAATACAGGATCTGAAATGAACTGCAAGCTATCAGGGCAGAAGGACATGTCCCG
AATCGAGACATTGTATCATGCTGACAAGGAGAAGACTGAAGCACTTATCCTGGAGCTGGT
CGTGTGGCTTCATCATCTTATCAGTAAATCAAGACACGCCAGTGGAGGTGTAAGGTCTCC
CATCAAATCTCCAGTCAGCTCACCAACACAAAATGGCGCTGCAATCACACTGTTGCCGGG
CAAAACGAAAATTTCATCACCGATTCTCACCCAAGAGGATCAGGATATGCTAAGGGATGT
CAAGTACAGGAAATTTGTCCCAGGGATAAGCAAAAGTCAAGAGTTTGACACAAAGTCAAG
TCACAGCAAACGGAGTAGGTTGAGCAAGAGCAACAGCCAGTCCCCAGCTAGTGGCAACAG
GAAATAATTGCTCCCAGTTAGGAGGTCTTCCATGCTTCCAGTTATTGACTTCGAAATTCA
CAGGACCAAAGCTTTGGATTTAATTGACAGGCTTGACAACCTAAAAATACAACGAGCAGG
AAGCTAACCGGAACGTAAACTTGAATGTGGTCATCCGCAGTCTTGAAACCCCAGCCGCGA
TATAAACAGTTACTGAGTATCAGATATGAGTAGCAAGGCCGGCCGTTGAACTCTGGTGAG
AAGCTAACAGTATGAGAAGCTGGTATCGTATATCCTGTACCGAATAGAATAGGCAAAATG
TTGTAAAAATGACATATCGTTTGTAACTGCACAAGAAATAAGAAGTGCAAGTTTTTTAGT
TTAAAAAGGGAGGGCAAAAAGGATGTTTTTGTTCTATGTTTTGATGGCCACTAGGCCAGA
ATGGCTTGTATGAACCTTAGTACTCTTTTTTGTTCCAAATTATAGATCATTTTAGTTTTT
CTAAATACATAATGATATACAATT