Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d038330_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:6:154712721:154715589:1 gene:Zm00001d038330 gene_biotype:protein_coding transcript_biotype:protein_coding description:DUF1682 family protein
Sequence

ATGGCAGCGCCGAGCTGGATCCGGCTCCGGCAGGCGCGTGCAACCCTCCTCATCCTGCTG
CTCCTCGCCCTCAACATCTCCCTTTCCTCCGCCGCCAACTTCGAGGGCTTCGACTCCGAC
GACCTTCCCTCCGCGGCCGGTGGCCTCGATGCTGACGATGACGAGGAAGGTCTCGACGGC
GTCGACCTCCCGCCCCCTCCGCCCATCTCCCTCTCCACCTCTGCGCCATCACCTCCCGTC
ACGACGACATCCGCGCCGAACCCTAACCCCGCTACGCGTACGCCTCGGGACCCCACCCCG
GCGCTCGACCTCTGGGACGAGGACGAGTTCGAGGGCATCCCCGTGCCGGAAGCGATCCCC
TCCGACGACTCCGCCGCGCCGGCCGAGGCCGGCCAGTCAGATCCCTCCGCCGAGGCTCCT
GCCGAGGCAATTCCGGCCGCGAAGAGGAGCCCAGCTGAGCTCCTCCGCGCGTTCTCCGTC
GAGATCGCGTGTGTCAGCTTCCTGATCTGCTTCGTGCTCAACTACTTTACGGGGAAGCGG
CAAAACGAGAACATCGCGCTGGCCTGGGCCACCAAGTTCGCCACGAGGGACTCCATCTTC
GACAAGAACTTCAGCCTTCTTGGCACAGGCGACGGCAAGGACACGCCACTCCTGCTCAAG
GAAGGGCAGGACGTGTTCAAATTCTACGCCAGTGGGAGACGCTTCTGCCAGGGCATGCTC
GCCACCATGGAGATGCGGGCGCGGCACGACCTGCTGTCAAGGTTCGTCGAGCTGGTCTTC
CCTGGGAAGGACACCATTACGTTCGAGGTGGTAATGAACGAAGAGGCCATGGACCATGTG
GTTCTGGCCGTGGCCCGGAAGAAGGCAGCCAAGACGCTGCAGAAAGAGGAAAGGGATCTG
CAGAGGTTTGCCAACGTTATCACTTCGGCGCCTGCTGGGAGGAAGTGGGTGTCAGATGAG
CTTGCTGTGGTGGCTGAGTCGAAGGAGGTTGCTGGGGATATGATCACTGAGGCTGTGCTT
GATCAGGTGAGAGTGAACTACATAATTTTAGTTTTATGGATTCACTTAAGTAAATGCTTC
ATTTGGATAAGATTGTTAACTTAG

Peptide Sequence

PEP ID

Zm00001d038330_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:6:154712721:154715589:1 gene:Zm00001d038330 transcript:Zm00001d038330_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:DUF1682 family protein
Sequence

MAAPSWIRLRQARATLLILLLLALNISLSSAANFEGFDSDDLPSAAGGLDADDDEEGLDG
VDLPPPPPISLSTSAPSPPVTTTSAPNPNPATRTPRDPTPALDLWDEDEFEGIPVPEAIP
SDDSAAPAEAGQSDPSAEAPAEAIPAAKRSPAELLRAFSVEIACVSFLICFVLNYFTGKR
QNENIALAWATKFATRDSIFDKNFSLLGTGDGKDTPLLLKEGQDVFKFYASGRRFCQGML
ATMEMRARHDLLSRFVELVFPGKDTITFEVVMNEEAMDHVVLAVARKKAAKTLQKEERDL
QRFANVITSAPAGRKWVSDELAVVAESKEVAGDMITEAVLDQVRVNYIILVLWIHLSKCF
IWIRLLT

Transcript Sequence

Transcript ID

Zm00001d038330_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:154712721:154715589:1 gene:Zm00001d038330 gene_biotype:protein_coding transcript_biotype:protein_coding description:DUF1682 family protein
Sequence

CAGCACCACCGCGCTAGTCATCCACTTCGTCGTCCCCCAGCACACACACACCCTTCCTCC
GCTGCCTCAGCTATGGCAGCGCCGAGCTGGATCCGGCTCCGGCAGGCGCGTGCAACCCTC
CTCATCCTGCTGCTCCTCGCCCTCAACATCTCCCTTTCCTCCGCCGCCAACTTCGAGGGC
TTCGACTCCGACGACCTTCCCTCCGCGGCCGGTGGCCTCGATGCTGACGATGACGAGGAA
GGTCTCGACGGCGTCGACCTCCCGCCCCCTCCGCCCATCTCCCTCTCCACCTCTGCGCCA
TCACCTCCCGTCACGACGACATCCGCGCCGAACCCTAACCCCGCTACGCGTACGCCTCGG
GACCCCACCCCGGCGCTCGACCTCTGGGACGAGGACGAGTTCGAGGGCATCCCCGTGCCG
GAAGCGATCCCCTCCGACGACTCCGCCGCGCCGGCCGAGGCCGGCCAGTCAGATCCCTCC
GCCGAGGCTCCTGCCGAGGCAATTCCGGCCGCGAAGAGGAGCCCAGCTGAGCTCCTCCGC
GCGTTCTCCGTCGAGATCGCGTGTGTCAGCTTCCTGATCTGCTTCGTGCTCAACTACTTT
ACGGGGAAGCGGCAAAACGAGAACATCGCGCTGGCCTGGGCCACCAAGTTCGCCACGAGG
GACTCCATCTTCGACAAGAACTTCAGCCTTCTTGGCACAGGCGACGGCAAGGACACGCCA
CTCCTGCTCAAGGAAGGGCAGGACGTGTTCAAATTCTACGCCAGTGGGAGACGCTTCTGC
CAGGGCATGCTCGCCACCATGGAGATGCGGGCGCGGCACGACCTGCTGTCAAGGTTCGTC
GAGCTGGTCTTCCCTGGGAAGGACACCATTACGTTCGAGGTGGTAATGAACGAAGAGGCC
ATGGACCATGTGGTTCTGGCCGTGGCCCGGAAGAAGGCAGCCAAGACGCTGCAGAAAGAG
GAAAGGGATCTGCAGAGGTTTGCCAACGTTATCACTTCGGCGCCTGCTGGGAGGAAGTGG
GTGTCAGATGAGCTTGCTGTGGTGGCTGAGTCGAAGGAGGTTGCTGGGGATATGATCACT
GAGGCTGTGCTTGATCAGGTGAGAGTGAACTACATAATTTTAGTTTTATGGATTCACTTA
AGTAAATGCTTCATTTGGATAAGATTGTTAACTTAGATACTTACATTGCTGCTGCTTCAA
TGTTTAATGAATTCGCTAAAAATATATTCAGGAGGAGAACTGTGTGATTTGAGATAGCCT
CACATTTTTTGAACATTATACTGTTAAATGCTGACATTGGAGAAGTTATGCTTGTATGCA
AAGTAAAATTTACAATCTTGAATTGCAAACTGAGCTCAACTTGTTGCTTTGATGGGAAGC
TTATCAACAGTAATTCCTACAGTCCTTGGTCTAAGCTATGCTGTTATTGTTTTTTGTAAG
TAGAATTTTGTTTATAATAGGTGATGGCATACCATGAAGTGATGAAAAGGATATCCTTTT
AAAATTAGTAGCATGTTGGTAGATTTCATCTATCTTTTATTGAATTTGGAACATGTCATG
TTTTTCTTCTCCCCTGAATTTGTTTGTTCTTAGAGATTTTATTTTGTCTTTGATATGTTC
TTGCACTGCCACCTTTTGGGCATTGATGAAAGCCTGGTTTGAACAAGGAACAGAATGTAC
TTGGACTTTTGATGTTACTTCCAGAATCAAGTTCATTCATGCTATCGATTTTCAATGATT
GAAGTAGCTGCTGTCTTTTATTGATTGAGGTAGCTTCAGTTTCTTATATATATAAATAAG
TTCTGGGATTAGTGCTATTGCCTATGAGATGATTGGATTTTGGTGAGGTCCAATTTAGGT
TATTGTGAAATCTGTCATTAGCTATAGTAGACGTTGGCGTGCTTATTGTAAAACAGTATG
TCTGATAAGATAAGGCCAATGTGTGTTTCTAAACATTATGAACCATGTACTGGTACTTTC
ATCTCTAACTTTTGAGTTAGGACTTAAATGGGAGTAACTAGGACCAAAAGAAAGCTAGTC
AGTTGGACCTGGATACTGTATTAAGATCGAGGACCCTAGCTTAAGCAAGGTCGAATGAAC
CAAATACGCCAATGCGACTGACTCAGTTTATCTTGCATATAGTGTGCCTTACCCTGCTTC
TATTGGTTCTTCCATCTTCAGGTTCTTGGTGAGAAGGCATTTGAGAAATTTGGGAAGTGG
TTCATCTCGCTTCGTTTTTCAGACCAGTTGGCAGGTTCTTACAAGAAGGTCCTTGCATTC
AAGTTTGTATTGCCAGATGCAAGCAACATGTCAGAGATGACAAGATTGGTTGCTCTTGTG
CCATACTACATTGATTTGGTTGGCCGTTATAAGCTCAGCTCTCATGTGAGTATCCATTTT
TTGTCTTCTTAGAACTCGTCATCATGTTCTAGTTATATGTTTAAAGTTTTCTATCTATGG
TGTTTGCAGGCTCGCTCTAAAACTGATGGAGCTAGAACAAAGGCTGCTCAGGAGGCTTTC
AGGGAACTACAGAGTGCCCGGCAGGAGGCCCTGCAAAGGAAAAAGGCTGAAAAGAAGAAA
CTCATCGAGGAGGCAGATGCCAAACTAAGCGCTGAGTCACTCAGGAAGAAAGAAGAAAAG
GAAAGGGCTCGGCAAATGAAGAAGTCTGGACCCAAAGTGAAGATGCTCCGCTCTTAACAA
CGTCCTGTTGATTAGCATATAGTTCAGTGTCTGCTAGACTCATTTATATTCTAATCCTGT
G