Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d038274_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:6:153040261:153042534:1 gene:Zm00001d038274 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide repeat (TPR)-like superfamily protein
Sequence

ATGGGCTTCCAGGTGGCTGCCGTGGCACCGCCGCCGTGCGCGCGCTCCTCCTCCGCCTTA
TCGTCGCCCTCGACCTCCTCGCGGCCGTTGCCCGCCTTCCTCGGAGGCGGCGGCGGATGC
GCCGGGCTCGCGAGATCCCGGGCACCCGTAAACTGGGGAACCGGCGTGATGGTGCGGCGC
CCGCGCCCGGCTCGGACGCCAGCGAGGTGCGCGCTGAGCGCGAGTTTGGATGGGATGGGT
GGCGGGGACGCGGAGTTCATGAAGAGGATCGAGGAGCTCGCTGCGGCGGCTGGGGTGCAG
CCGGCCGGCCCGGCGGGTTGCGGCTGGCCCGCGAGCGTGGAGCTGAGCGCGAGCAACGTC
GGGCTGCCGCTGTCGCTGCGGATGCTGAAGCGGAAAAAGCAGCAACAGCAGGCGCAGCTG
CATGCTGTAGCGCGTCCTTCACGCTGGGACGATGGGCTGCTGGGCTCCGCCGGGGAGTCG
GTGGGCCGCGCCTTCTCCTCCATGGTGCTCATCGTGCGGGAGCTGCAGAGCTTCGCGCTG
CAGCAGATGCGCGACGCGCTGCTCTGCGACGACCTGCAGGGCGTCCTGGCGCGTGTGCAG
GGCGAGATGCACGACTCCTTCGTCTGGCTCTTCCAGCATATCTTCGCGGGCACGCCGGCG
TTCATGGTCTCCCTCATGCTCCTCCTCGCCAACTTCACCGTCCAATCGATGGGCCGCAGC
GTCGCCGCTGCGGCCGCCACCATCCCGCCTACTGCGCCTGCTGTCGCCCTTGTCAACGCC
CAGCGCCCCGAGCCGTCACGTCCGCGGTTCGACGCGGCTTCGGTGAAGACGTTCTCCGTC
GACCGGATGGCCTCGGTCGGGGGGGACATCGGCGGTGGCGGCAAGACCCCGCCTGTCGCG
GGTGCCACCGGCGACGGCCGGTCGGACGAGTCCTTATATCGGCTAAGCCGTGTGTCGCCG
CAGCAGCCGTCGGCACCCCCTGTGGCTGAGGTCGCCCAAGACGCTGCGGACGCGGACGAG
CAGGCCATTTGGGAAATGATGCTCGCGGAGGCCCTGAAGGCCAGCCCGCGCACCGAGGAG
CTGAGCGATCCGGACGTGCTCAGAAGCCTCGTCGCGCCGGTGGAGGCGGAGCTGGAGACC
GAGGACCACGCCGAGCACACGCTGACGGAGCAGAGATACGAGCAGGCCGTCGCCGCTGAG
CCCAACAATCCGCTCATCCTCGCCAACTTCGCGCAGTTCCTCTACCTCGTGCAGAACGAC
CACGACCGGGCGGAGCACTACTTCGAGAGAGCAGTGCGCGCTGAGCCGGCGGACTCGGAG
GCGCTGAGCCGGTACGCTACTTTCCTATGGAAGGCGCGGAACGACCTCGCCGGCGCGGAG
GACACCTACCAGGAGGCCATCGCGGCCGATCCCGGGAACGCCCACCACGCCGCGGCCTAC
GCGCACTTCCTCTGGAACACCGGAGCATGCACGGGCACGGGGGCGGAGGCCACGCGGCGA
GACGCCTAG

Peptide Sequence

PEP ID

Zm00001d038274_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:6:153040261:153042534:1 gene:Zm00001d038274 transcript:Zm00001d038274_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide repeat (TPR)-like superfamily protein
Sequence

MGFQVAAVAPPPCARSSSALSSPSTSSRPLPAFLGGGGGCAGLARSRAPVNWGTGVMVRR
PRPARTPARCALSASLDGMGGGDAEFMKRIEELAAAAGVQPAGPAGCGWPASVELSASNV
GLPLSLRMLKRKKQQQQAQLHAVARPSRWDDGLLGSAGESVGRAFSSMVLIVRELQSFAL
QQMRDALLCDDLQGVLARVQGEMHDSFVWLFQHIFAGTPAFMVSLMLLLANFTVQSMGRS
VAAAAATIPPTAPAVALVNAQRPEPSRPRFDAASVKTFSVDRMASVGGDIGGGGKTPPVA
GATGDGRSDESLYRLSRVSPQQPSAPPVAEVAQDAADADEQAIWEMMLAEALKASPRTEE
LSDPDVLRSLVAPVEAELETEDHAEHTLTEQRYEQAVAAEPNNPLILANFAQFLYLVQND
HDRAEHYFERAVRAEPADSEALSRYATFLWKARNDLAGAEDTYQEAIAADPGNAHHAAAY
AHFLWNTGACTGTGAEATRRDA

Transcript Sequence

Transcript ID

Zm00001d038274_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:153040261:153042534:1 gene:Zm00001d038274 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide repeat (TPR)-like superfamily protein
Sequence

GCTGCTATTCCCACACCTCGTGCGGCGGTGGCCCAACCAAAGGTCAGCCGGGGCGCTTGA
GGCGGTGAGTCCTCGTCCTCGTCCGATATCGCAGCGGAACAAGGTCATGGGCTTCCAGGT
GGCTGCCGTGGCACCGCCGCCGTGCGCGCGCTCCTCCTCCGCCTTATCGTCGCCCTCGAC
CTCCTCGCGGCCGTTGCCCGCCTTCCTCGGAGGCGGCGGCGGATGCGCCGGGCTCGCGAG
ATCCCGGGCACCCGTAAACTGGGGAACCGGCGTGATGGTGCGGCGCCCGCGCCCGGCTCG
GACGCCAGCGAGGTGCGCGCTGAGCGCGAGTTTGGATGGGATGGGTGGCGGGGACGCGGA
GTTCATGAAGAGGATCGAGGAGCTCGCTGCGGCGGCTGGGGTGCAGCCGGCCGGCCCGGC
GGGTTGCGGCTGGCCCGCGAGCGTGGAGCTGAGCGCGAGCAACGTCGGGCTGCCGCTGTC
GCTGCGGATGCTGAAGCGGAAAAAGCAGCAACAGCAGGCGCAGCTGCATGCTGTAGCGCG
TCCTTCACGCTGGGACGATGGGCTGCTGGGCTCCGCCGGGGAGTCGGTGGGCCGCGCCTT
CTCCTCCATGGTGCTCATCGTGCGGGAGCTGCAGAGCTTCGCGCTGCAGCAGATGCGCGA
CGCGCTGCTCTGCGACGACCTGCAGGGCGTCCTGGCGCGTGTGCAGGGCGAGATGCACGA
CTCCTTCGTCTGGCTCTTCCAGCATATCTTCGCGGGCACGCCGGCGTTCATGGTCTCCCT
CATGCTCCTCCTCGCCAACTTCACCGTCCAATCGATGGGCCGCAGCGTCGCCGCTGCGGC
CGCCACCATCCCGCCTACTGCGCCTGCTGTCGCCCTTGTCAACGCCCAGCGCCCCGAGCC
GTCACGTCCGCGGTTCGACGCGGCTTCGGTGAAGACGTTCTCCGTCGACCGGATGGCCTC
GGTCGGGGGGGACATCGGCGGTGGCGGCAAGACCCCGCCTGTCGCGGGTGCCACCGGCGA
CGGCCGGTCGGACGAGTCCTTATATCGGCTAAGCCGTGTGTCGCCGCAGCAGCCGTCGGC
ACCCCCTGTGGCTGAGGTCGCCCAAGACGCTGCGGACGCGGACGAGCAGGCCATTTGGGA
AATGATGCTCGCGGAGGCCCTGAAGGCCAGCCCGCGCACCGAGGAGCTGAGCGATCCGGA
CGTGCTCAGAAGCCTCGTCGCGCCGGTGGAGGCGGAGCTGGAGACCGAGGACCACGCCGA
GCACACGCTGACGGAGCAGAGATACGAGCAGGCCGTCGCCGCTGAGCCCAACAATCCGCT
CATCCTCGCCAACTTCGCGCAGTTCCTCTACCTCGTGCAGAACGACCACGACCGGGCGGA
GCACTACTTCGAGAGAGCAGTGCGCGCTGAGCCGGCGGACTCGGAGGCGCTGAGCCGGTA
CGCTACTTTCCTATGGAAGGCGCGGAACGACCTCGCCGGCGCGGAGGACACCTACCAGGA
GGCCATCGCGGCCGATCCCGGGAACGCCCACCACGCCGCGGCCTACGCGCACTTCCTCTG
GAACACCGGAGCATGCACGGGCACGGGGGCGGAGGCCACGCGGCGAGACGCCTAGACCAC
GACATCACACCATGGCCCGGGCGGTGGAGTGGAGCTGACACATGATATCGTCCCCCTTTT
TACTTAGTCTGATTAGAAGATTGCGTGCGTGCCGTGGGCAGTGGAGTGAGTTGTGATCCA
GGAGGACACGGTGGTGGTGGTGGTGGTGGTGTTTCTTCCCGCGCTCCGGGAACCGCGGCG
GAGAAGGACGGGCCTCGGTCGTCGGGACCAACCGGCGGCCGGAAGGCATGGACGGCTGGC
TATAGAAACGTGGTAGAGCGCAGAGTCGTCGAGGGCGACGAGGTGGCATGGATCAGGGAT
GGGATGTTCTATGGAATACTCTAGTGTATAGCGACTCGCATCATGTAATTATGTACTAGA
TGTGGAAAAAATAACACCCGAATAAGAAGTATCCCGGTAAAGTACCGACCTCGGATCTAG
CGTGTT