Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d038268_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:6:152782090:152785547:-1 gene:Zm00001d038268 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable anion transporter 3 chloroplastic
Sequence

ATGGCGTCGGTCAGGCCGTGCGTGTCCGTGAAGCCCGCCGTGCGCCCGGTCAGGTACAGA
TCCACGAGGGCTGGGCCGGCCGGCTTGGGAAGGCTGCGCGTATGTTCCTGCTCCCTGGCG
CTCGGCGGCGACGGTGGCTGCACCCGCAGCAGCGGGAGGAGCGTCGACGTCAGTGGTGCC
GGTCTCGGCTTGCTCGGCGGCGATGGACTGAGGATCCACAGGCGGGGCGGGCGGGAGGTC
CTCGCCATGTGCAGCGCAAGCTTCGACGGGGTCCGCCCCGCCGCCGTGGCGAGCGCCGTT
CAGCCCGTGCCGGCGTTCCCCGAACGGGCCAAGGTGGTGTCGCTGGTGGCGGCTATCATG
CTGCTCTGCAACGCCGACCGGGTCGTCATGTCCGTCGCCGTCGTGCCGTTCGCCGCGCAG
TATGGATGGTCCAGCTCCTTCGTCGGCATCGTCCAGTCTTCATTTTTATGGGGATATGTT
TTGTCATCCATGGTTGGAGGAGCTTTGGCAGACAAATACGGCGGGAAGAAGGTGATGGCA
GGTGCTGCTGCACTCTGGTCCTTGGCCACAATTCTCACTCCTTGGGCTGCCTCCCGCTCC
ACCATCATGTTGCTTGCTGTACGTGCACTCTTTGGCCTTGCAGAAGGTGTTGCGTTTCCG
ACAATGAGCACTTTCCTACCAAAGTGGTTCCCAACGCATGAGCGTGCCACTGCTGTCGCC
ATTTCCATGGGTGGATTCCATCTTGGAAATGTCATAAGCTTCCTAGCAACACCGATCATC
ATGTCACACATAGGCCTCTCGGGAACATTTGCCTTCTTCGCATCGCTTGGTTATTTGTGG
CTCTCTGTATGGATGATGAACGTAGAAAGTGATCCTATTGACAGCCATACTATAAGCAAG
TCTGAGTTGCAATTAATTCTAGATGGGAGAATTGGATCTAAAGTCCAAGGAAGTAAATTC
CCATCCCTAAGAGAATTGTTCTCAAAGACTCAATTCTTGGCTGTCACTTTGGCCAATGTG
GTCAACAACTGGGGCTATTTTGTCCTATTGTCATGGATGCCCGTGTATTTCAATACGGTT
TATAACATCAATCTGAAACAAGCAGCGTGGTTCAGTGCCATACCTTGGGCAGTCATGGCT
ATGTCCGGTTATGTTGCAGGAGCCTCTGCAGATTTTCTTATCAAATCTGGTTTCTCTATT
GGACTAGTTCGAAAAATTATGCAGTCCATTGGTTTTATGGGGCCTTGCGTGTCATTGCTG
TGCTTAAGGTTTGCCCAAACTCCATCAGTTGCTGCAGTCCTCATGACCATTGCGCTGAGC
TTGTGTTCTTTTAGCCAAGCCGGATACATGTGTAACATACAGGACATTGCTCCAAAGTAT
GCTGGATCCTTGCACGGGCTGACGAACGGCATAGGGACGGTGGCAGCCATAGTTAGCACC
ATCGGGATCGGCTACTTCGTCCAGTGGCTAGGGTCCTTCCAGGCCTTCCTCACGCTCACG
GCGGCGCTCTACTTCAGCGCCACCATCTTCTACAACGTCTACGCAACCGGCGACCTGATT
TTTGACTGA

Peptide Sequence

PEP ID

Zm00001d038268_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:6:152782090:152785547:-1 gene:Zm00001d038268 transcript:Zm00001d038268_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable anion transporter 3 chloroplastic
Sequence

MASVRPCVSVKPAVRPVRYRSTRAGPAGLGRLRVCSCSLALGGDGGCTRSSGRSVDVSGA
GLGLLGGDGLRIHRRGGREVLAMCSASFDGVRPAAVASAVQPVPAFPERAKVVSLVAAIM
LLCNADRVVMSVAVVPFAAQYGWSSSFVGIVQSSFLWGYVLSSMVGGALADKYGGKKVMA
GAAALWSLATILTPWAASRSTIMLLAVRALFGLAEGVAFPTMSTFLPKWFPTHERATAVA
ISMGGFHLGNVISFLATPIIMSHIGLSGTFAFFASLGYLWLSVWMMNVESDPIDSHTISK
SELQLILDGRIGSKVQGSKFPSLRELFSKTQFLAVTLANVVNNWGYFVLLSWMPVYFNTV
YNINLKQAAWFSAIPWAVMAMSGYVAGASADFLIKSGFSIGLVRKIMQSIGFMGPCVSLL
CLRFAQTPSVAAVLMTIALSLCSFSQAGYMCNIQDIAPKYAGSLHGLTNGIGTVAAIVST
IGIGYFVQWLGSFQAFLTLTAALYFSATIFYNVYATGDLIFD

Transcript Sequence

Transcript ID

Zm00001d038268_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:152782090:152785547:-1 gene:Zm00001d038268 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable anion transporter 3 chloroplastic
Sequence

GCCGTGTATCGGGTTCGGCTTCTCCCACGCGCGTGTTGTTGGATCAAGCTGAGCATGGCG
TCGGTCAGGCCGTGCGTGTCCGTGAAGCCCGCCGTGCGCCCGGTCAGGTACAGATCCACG
AGGGCTGGGCCGGCCGGCTTGGGAAGGCTGCGCGTATGTTCCTGCTCCCTGGCGCTCGGC
GGCGACGGTGGCTGCACCCGCAGCAGCGGGAGGAGCGTCGACGTCAGTGGTGCCGGTCTC
GGCTTGCTCGGCGGCGATGGACTGAGGATCCACAGGCGGGGCGGGCGGGAGGTCCTCGCC
ATGTGCAGCGCAAGCTTCGACGGGGTCCGCCCCGCCGCCGTGGCGAGCGCCGTTCAGCCC
GTGCCGGCGTTCCCCGAACGGGCCAAGGTGGTGTCGCTGGTGGCGGCTATCATGCTGCTC
TGCAACGCCGACCGGGTCGTCATGTCCGTCGCCGTCGTGCCGTTCGCCGCGCAGTATGGA
TGGTCCAGCTCCTTCGTCGGCATCGTCCAGTCTTCATTTTTATGGGGATATGTTTTGTCA
TCCATGGTTGGAGGAGCTTTGGCAGACAAATACGGCGGGAAGAAGGTGATGGCAGGTGCT
GCTGCACTCTGGTCCTTGGCCACAATTCTCACTCCTTGGGCTGCCTCCCGCTCCACCATC
ATGTTGCTTGCTGTACGTGCACTCTTTGGCCTTGCAGAAGGTGTTGCGTTTCCGACAATG
AGCACTTTCCTACCAAAGTGGTTCCCAACGCATGAGCGTGCCACTGCTGTCGCCATTTCC
ATGGGTGGATTCCATCTTGGAAATGTCATAAGCTTCCTAGCAACACCGATCATCATGTCA
CACATAGGCCTCTCGGGAACATTTGCCTTCTTCGCATCGCTTGGTTATTTGTGGCTCTCT
GTATGGATGATGAACGTAGAAAGTGATCCTATTGACAGCCATACTATAAGCAAGTCTGAG
TTGCAATTAATTCTAGATGGGAGAATTGGATCTAAAGTCCAAGGAAGTAAATTCCCATCC
CTAAGAGAATTGTTCTCAAAGACTCAATTCTTGGCTGTCACTTTGGCCAATGTGGTCAAC
AACTGGGGCTATTTTGTCCTATTGTCATGGATGCCCGTGTATTTCAATACGGTTTATAAC
ATCAATCTGAAACAAGCAGCGTGGTTCAGTGCCATACCTTGGGCAGTCATGGCTATGTCC
GGTTATGTTGCAGGAGCCTCTGCAGATTTTCTTATCAAATCTGGTTTCTCTATTGGACTA
GTTCGAAAAATTATGCAGTCCATTGGTTTTATGGGGCCTTGCGTGTCATTGCTGTGCTTA
AGGTTTGCCCAAACTCCATCAGTTGCTGCAGTCCTCATGACCATTGCGCTGAGCTTGTGT
TCTTTTAGCCAAGCCGGATACATGTGTAACATACAGGACATTGCTCCAAAGTATGCTGGA
TCCTTGCACGGGCTGACGAACGGCATAGGGACGGTGGCAGCCATAGTTAGCACCATCGGG
ATCGGCTACTTCGTCCAGTGGCTAGGGTCCTTCCAGGCCTTCCTCACGCTCACGGCGGCG
CTCTACTTCAGCGCCACCATCTTCTACAACGTCTACGCAACCGGCGACCTGATTTTTGAC
TGAGGAAAAATGCTTTTGTGCACACGCAGAATCCCAAAGTGTACCAACATTTTAATTGTA
TCTCCCCAAGCATGGAATAAAATAGGGGTTTAGGGTTT