Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d038100_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:6:147934926:147945863:1 gene:Zm00001d038100 gene_biotype:protein_coding transcript_biotype:protein_coding description:CPL3

Sequence

ATGAGCCTCACCGAGGCGCCGTCCCCGTCCCCGTCGTCGTCGAGCGGGAGCGATGACTTC
GCGGCCTTCCTCGCCTCCGAGCTCGAGCTCACCTCCGGTGCTGACTCCGCCTTCCCTGGT
GACCCCTCCTCCGTTTTCCCCGCCACCGACGACGAGGGCGAGGACGAGGATCCGGAGGAG
CTAGAGGTTGAAGCCATAGAACAAAACGGTACCAAAAGGCGTAGAGTAGAGGAACAATGC
CAAGATCAAGGAACATCAGTTAGGCCTGACAAAATCCCCACTGGCGCATCTAAAATTGTT
CAGGTTGAGGCATGTCCACATCCTGGACATTTTGGTGGACTTTGCATTATCTGTGGCAAG
CCACAAGACGAGGAAGATGTTTCAGGAGTTGCTTTTGGTTACATCCACAAGGGCTTGAGG
CTAGGTACCTCAGAAATTGACAGACTACGTGGTGCTGATTTGAAGAATCTGTTGCGTGAA
AGAAAATTAGTACTCATTTTGGACCTGGATCACACATTGATCAACTCCACCAAACTCCAA
GACATTTCTTCTGCCGAAAAAGATTTGGGTATTCAGTCTGCTGCTTCAAAAGATGATCCA
AATAGAAGCATCTTCGCACTAGATTTAATGCCGATGCTCACAAAGTTGAGACCATTTGTC
CGAGAATTTCTGAAAGAAGCAAGCAATATGTTTGAGATGTATATATACACGATGGGTGAC
AAAGCCTATGCAATTGAAATTGCAAAGCTTCTTGACCCTAGTAACATATATTTTCCTTCA
AAAGTGATTTCAAACTCAGATTGCACTCAGCGACATCAGAAAGGTCTTGATGTGATTCTT
GGAGCTGAAAGTGTTGCAGTGATTCTTGATGACACTGAGTATGTATGGCAGAAGCATAAA
GAGAACCTGATTCTGATGGAGAGATATCATTTCTTTGCTTCAAGCTGCCGCCAATTTGGT
TTTGGTGTTAGGTCTTTGTCAGAATCGTTGCAAGATGAAAGGGAGAGTGATGGTGCTTTG
GCTACCGTTTTAGATGTCTTGAAGCGCATACACGCTACTTTCTTTGACATGGCTGCTGAA
ACTGATCTTTCTTCACGGGATATAAGACAGGTGATCAAGACGTTACGGAAGGAAATACTG
CAAGGATGCAAAATAGTCTTCAGTCGGGTGTTCCCAAACAATACACGCCCACAGGAGCAG
ATGGTCTGGAAGATGGCCGAGTATCTGGGTGCCGTTTGCGTTAAAGATGTGGATCCCAGT
GTCACCCATGTTGTAACTGTGGATCTGGGAACAGAGAAGGCCCGCTGGGGTCTTAACAAC
AAGAAGTTCTTGGTCCACCCACGCTGGATTGAAGCAGCAAATTTCCGGTGGCATAGGCAA
CCGGAGGAAGATTTTCCTGTCACTGCCCCTAAGGAAAAGAGCAAAGAGAAAGATAGTGAT
AATGATGTGGCTGGCAAGAAGGAAACGAGCGAGGATAAAGAGAATACTGCAGCTGGCATG
AAGGAAACGAGGAACGATGAAGGAAATGTAACCGGTAAAGACAAAGCTGATGCCAAAGAA
AACGTTGTGACCACATCTGCTACGTGTCCTGCAGACTCGTAG

Peptide Sequence

PEP ID

Zm00001d038100_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:6:147934926:147945863:1 gene:Zm00001d038100 transcript:Zm00001d038100_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:CPL3

Sequence

MSLTEAPSPSPSSSSGSDDFAAFLASELELTSGADSAFPGDPSSVFPATDDEGEDEDPEE
LEVEAIEQNGTKRRRVEEQCQDQGTSVRPDKIPTGASKIVQVEACPHPGHFGGLCIICGK
PQDEEDVSGVAFGYIHKGLRLGTSEIDRLRGADLKNLLRERKLVLILDLDHTLINSTKLQ
DISSAEKDLGIQSAASKDDPNRSIFALDLMPMLTKLRPFVREFLKEASNMFEMYIYTMGD
KAYAIEIAKLLDPSNIYFPSKVISNSDCTQRHQKGLDVILGAESVAVILDDTEYVWQKHK
ENLILMERYHFFASSCRQFGFGVRSLSESLQDERESDGALATVLDVLKRIHATFFDMAAE
TDLSSRDIRQVIKTLRKEILQGCKIVFSRVFPNNTRPQEQMVWKMAEYLGAVCVKDVDPS
VTHVVTVDLGTEKARWGLNNKKFLVHPRWIEAANFRWHRQPEEDFPVTAPKEKSKEKDSD
NDVAGKKETSEDKENTAAGMKETRNDEGNVTGKDKADAKENVVTTSATCPADS

Transcript Sequence

Transcript ID

Zm00001d038100_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:147934926:147945863:1 gene:Zm00001d038100 gene_biotype:protein_coding transcript_biotype:protein_coding description:CPL3

Sequence

ACTCGCATCTGCTCCGTCATGACTCATGACACCGTAGCTTCCTTCCTCGCCGTCGCCAAA
TGCTGCAGGCCGCCTCCATGAGGTGCTAGGGTTCCCTGGCCGACGCCACGACCGTCGCAC
CCGGCCGCCTCCGTCCCTGCGGGCCTTCGCCACCGCCCTCGCCAAACGTCCCGAGCTAGG
GTTCCTCACAGCTTCTCCCAAGCGCCCTCCAGTCTCACCAACCCTTCTGCGGTTCTGCCC
TTGGCGCCGCGCCCATGAGCCTCACCGAGGCGCCGTCCCCGTCCCCGTCGTCGTCGAGCG
GGAGCGATGACTTCGCGGCCTTCCTCGCCTCCGAGCTCGAGCTCACCTCCGGTGCTGACT
CCGCCTTCCCTGGTGACCCCTCCTCCGTTTTCCCCGCCACCGACGACGAGGGCGAGGACG
AGGATCCGGAGGAGCTAGAGGTTGAAGCCATAGAACAAAACGGTACCAAAAGGCGTAGAG
TAGAGGAACAATGCCAAGATCAAGGAACATCAGTTAGGCCTGACAAAATCCCCACTGGCG
CATCTAAAATTGTTCAGGTTGAGGCATGTCCACATCCTGGACATTTTGGTGGACTTTGCA
TTATCTGTGGCAAGCCACAAGACGAGGAAGATGTTTCAGGAGTTGCTTTTGGTTACATCC
ACAAGGGCTTGAGGCTAGGTACCTCAGAAATTGACAGACTACGTGGTGCTGATTTGAAGA
ATCTGTTGCGTGAAAGAAAATTAGTACTCATTTTGGACCTGGATCACACATTGATCAACT
CCACCAAACTCCAAGACATTTCTTCTGCCGAAAAAGATTTGGGTATTCAGTCTGCTGCTT
CAAAAGATGATCCAAATAGAAGCATCTTCGCACTAGATTTAATGCCGATGCTCACAAAGT
TGAGACCATTTGTCCGAGAATTTCTGAAAGAAGCAAGCAATATGTTTGAGATGTATATAT
ACACGATGGGTGACAAAGCCTATGCAATTGAAATTGCAAAGCTTCTTGACCCTAGTAACA
TATATTTTCCTTCAAAAGTGATTTCAAACTCAGATTGCACTCAGCGACATCAGAAAGGTC
TTGATGTGATTCTTGGAGCTGAAAGTGTTGCAGTGATTCTTGATGACACTGAGTATGTAT
GGCAGAAGCATAAAGAGAACCTGATTCTGATGGAGAGATATCATTTCTTTGCTTCAAGCT
GCCGCCAATTTGGTTTTGGTGTTAGGTCTTTGTCAGAATCGTTGCAAGATGAAAGGGAGA
GTGATGGTGCTTTGGCTACCGTTTTAGATGTCTTGAAGCGCATACACGCTACTTTCTTTG
ACATGGCTGCTGAAACTGATCTTTCTTCACGGGATATAAGACAGGTGATCAAGACGTTAC
GGAAGGAAATACTGCAAGGATGCAAAATAGTCTTCAGTCGGGTGTTCCCAAACAATACAC
GCCCACAGGAGCAGATGGTCTGGAAGATGGCCGAGTATCTGGGTGCCGTTTGCGTTAAAG
ATGTGGATCCCAGTGTCACCCATGTTGTAACTGTGGATCTGGGAACAGAGAAGGCCCGCT
GGGGTCTTAACAACAAGAAGTTCTTGGTCCACCCACGCTGGATTGAAGCAGCAAATTTCC
GGTGGCATAGGCAACCGGAGGAAGATTTTCCTGTCACTGCCCCTAAGGAAAAGAGCAAAG
AGAAAGATAGTGATAATGATGTGGCTGGCAAGAAGGAAACGAGCGAGGATAAAGAGAATA
CTGCAGCTGGCATGAAGGAAACGAGGAACGATGAAGGAAATGTAACCGGTAAAGACAAAG
CTGATGCCAAAGAAAACGTTGTGACCACATCTGCTACGTGTCCTGCAGACTCGTAGTCTG
TGTTGGGCTCCAAAGGCTTTAGATCTGTCCATAAAAAAAAGACGTTACATCTGCTCCATT
GCAAATTTTGCTGCTGACCTGAAGCTGATTGGGCCTCCGGCCATATAACTTACGCTACGA
TGAAACTATAGGAGTTGAAGCAAACTGATGTCTTTATGGGACAATTTTTGGTGAATCCGT
GCGACTATGTGCGCAGATGTACTTAAGTTTGTGCCTGCTTCGGTAGGTACTGCCCCCTGA
TGTAAGCATTCGTGATCGCTAGTGGAACTACGTTATTCTAGTTGAAAAAAAATGTTCCAC
ACATTAATTCTTGCACTGGAAAAGGCATAGGCAAGGTCGCTATGATGTTGCCATACATTG
AGTACGAAGTGATATGTTTTCCGGCGGAGCTGTAGGGGTTTTCGTTATAGTGATGAATTG
ATGATGACAAAAATAAATTCCGTCATTTCTTTT