Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d037864_T028
CDS Infomation

cds chromosome:B73_RefGen_v4:6:140130381:140137256:-1 gene:Zm00001d037864 gene_biotype:protein_coding transcript_biotype:protein_coding description:Heat shock protein DnaJ with tetratricopeptide repeat
Sequence

ATGGCGAACCCGGGCCTAGGGCTTGGACTCGCGCCACCGGGCGCCGAGCCCTCCGCCGGA
GCGCCGCCCTCTTCACGTCGCGCGCCGCGCTTGGCCAAACGGCGCCACGCGCCCGCCTCC
TCCCGCTCCCGCATGCCGCAGACCTCAGCCGGAATATGGAACCCGTTTGGTGGTGGCGGA
GGTACGGATAGACAGACCGGAGGCTTTGTGTTTGGTGCTGCTTCGGCAGTGAGCCAACAG
CCTTTGGAGCCAGCAGTGTCAGTAGCTTCACCCACTGAGGCGCCCTTCGTGTTTGGGAGC
GTGAGGGAGAGCCTGCCTCGGTTTGACGAGGGATCGCCCGCTTCATCAAAGCTCCCTGAT
AAGATGGAGAAGTTGAACCTGCGAACATCAAGTGAGGTTGACGATGGTCTCGGTCAGGGG
AGGGATCGAAAGGATGGAAGTTCGGTATTTGGTGCTGATATATCTGGTTTGTTTTCTAGT
AACAAGGAATCTAATGTGCTCCAGGAGAAGCTTACACAGTTGAATTTAGGCCACAAAGAA
CCCTTGCAAAGTAAGAAGAGGGATAGTGCTAATGGTGTGCCGCAAGCATTTGTGTTTGGA
GGTAATGGAGCTGGGAGTTTTGCTGACTGTAAGAACAAAGCCGCCCCTGGTGCACATTCA
GATGATCCTAGTTCAGTTCATGGCACTGATGCAAAAGGTATGGCTGGGAAGTCGATGCAG
TTCAATATAGGCAGTCAAGCACCTTCCAGGGGTGGGGGGATTGATCGTACTAATGGAGCA
CCAGAAGCTTTCACGTTTCGAAGTACCACATTAAGTGGTCATGTGGATAATATAAACAAT
GTTGACTCTGGTGCCAATACCAGTTCTTCCACTGTTGCTAAATGTGTTTGTGATGCAGAT
TTTCCTCTGGAAAAGATAACACGGTTGTGTATAGGAAGTGACATGCCCTTGCATGAGACG
AAAAGTGGTTATCAACCCAAAGTGTTTACGTTTGGAAGTGGAGGAATCCCAGGCGCTGTT
TTTGGGAAGGAAACTGGCAGCACATCAGATAGGAGCAGTGAATTCCTCTCTGCAAATAGC
AATACTTCTAGTTCAAGCAGTGATTTTTTCTCTACAGCAAATAGCAACGTTTCTAATTCC
GCTAATGGCACTTATTGTTTGCCACCAGAGAAGACACCAGATTTGAATGCAGGAGACAGA
GTCATGTCACAGAGCTTGGAAGGTGATAATTCTAATTGTCCAACAGAGACCTTTCTATTT
GAAAGAAATGAAACCCGAAGCTCTGTTTCGCACTCTGCAAGCATAGCCATGGATGACGGT
GGGAATTTTGTCAATGATGAAAATACTGACACCTGTAGTTCAGCTCACAGTACAGTGGAG
TGTGCAGGTGCTCTCCCAGAGAAGATGACAAAGTTAGGTATAGGATGCAGAATTCCACAT
CATAGCAGGAAAGATGAAACTGCTACCGATCCACCAGAAGTATATGTATTTGGATGTAAT
CTTTCTAGCTTTTCTTCTGCCCAGACTTCAAGTAAATCGAATGATCGCACGACTCCTGAA
TTTTGTTTTCAAAGCAAAACAGGGGCAACTTCAGGATATGGTGCTGTTCCCCAAACCAAA
GTTCAGGATTCATACCCATTTACAATTTTGAATAATTCATGTACTTTCTCTACTTTTGAG
AATGCAGTTCCTGCTTTCAGTTTTGGGACACTGAATGCAGAAACAGAAACAGCTCCAGAT
GATCCTTTTTCTTTTTCTGTCAAACATGATTTGCCTGGGTATTCCAGAGAGACCTTATTT
GGTTTAGACAGTATAAAATCTGCATACAAGGACAAAAGGGAAGCATGTAAAGGAAAAATG
AAAAACAAGAGGCCAACTAGGCTAAAGCAACATGCTCAGCTCCATCAGGTTATTTCTAAG
GAAGCCTGTACCAGTGGAGAAGCATCAGATTTAGCAGGTGACTGTTCACCAATGGATTGT
TCGCCATATCCTGCAGAATCTGAACATGTGCCAACAGAGGCATATGTGGCTTCTGATCAG
CCCGTTCACATAGGTGATACTGTTATCTCGAACGGGAACACCAGTTGTGCTGAGGATGAT
GTAGTTTCTGCAGCCGAGCACTTGGTTACTGATGCAGACCTACTGATGTTTGGAGATGAA
GGTAGAGGACCGAAACTAGATGCATCTGAGAGCAATTTTGGTAGCAGCGTTTCTAGTTTT
GAAGGAGATCAAAGCAATGCATCACAACATTCTTTCACTAATATTGGGCAAAACTGTAAT
GAGAATACCTACAGAACTCCCCATGATTTTGTTGAGGCTGCTGCTTTTCAATCAAACTCA
TCAAATTTCAGTGGGCTGAACTTTAGATTCGGTGTGTCATCCTCTCCACAAATCTCTGCT
GCGGCACAAAGACGTAGCACAAGAAGGAAGTTAAGAACAAAGGGTAGTCTAGCATCGAAA
CCTTCAACTATCGACTCTTTAGAACAGCCAAAATCTTCACAAGATACTAAGGGCATGCAG
TTTTTCTGTGAAGCAAGTAAAAATGAAGACTCAGTGAAAGCGCAACAATCAAGAGATTCT
TCTACTTCTGTGGCCTTGGAGACTTGTGAAACCTGGCGTACTAGGTTTGTGTGA

Peptide Sequence

PEP ID

Zm00001d037864_P028
PEP Infomation

pep chromosome:B73_RefGen_v4:6:140130381:140137256:-1 gene:Zm00001d037864 transcript:Zm00001d037864_T028 gene_biotype:protein_coding transcript_biotype:protein_coding description:Heat shock protein DnaJ with tetratricopeptide repeat
Sequence

MANPGLGLGLAPPGAEPSAGAPPSSRRAPRLAKRRHAPASSRSRMPQTSAGIWNPFGGGG
GTDRQTGGFVFGAASAVSQQPLEPAVSVASPTEAPFVFGSVRESLPRFDEGSPASSKLPD
KMEKLNLRTSSEVDDGLGQGRDRKDGSSVFGADISGLFSSNKESNVLQEKLTQLNLGHKE
PLQSKKRDSANGVPQAFVFGGNGAGSFADCKNKAAPGAHSDDPSSVHGTDAKGMAGKSMQ
FNIGSQAPSRGGGIDRTNGAPEAFTFRSTTLSGHVDNINNVDSGANTSSSTVAKCVCDAD
FPLEKITRLCIGSDMPLHETKSGYQPKVFTFGSGGIPGAVFGKETGSTSDRSSEFLSANS
NTSSSSSDFFSTANSNVSNSANGTYCLPPEKTPDLNAGDRVMSQSLEGDNSNCPTETFLF
ERNETRSSVSHSASIAMDDGGNFVNDENTDTCSSAHSTVECAGALPEKMTKLGIGCRIPH
HSRKDETATDPPEVYVFGCNLSSFSSAQTSSKSNDRTTPEFCFQSKTGATSGYGAVPQTK
VQDSYPFTILNNSCTFSTFENAVPAFSFGTLNAETETAPDDPFSFSVKHDLPGYSRETLF
GLDSIKSAYKDKREACKGKMKNKRPTRLKQHAQLHQVISKEACTSGEASDLAGDCSPMDC
SPYPAESEHVPTEAYVASDQPVHIGDTVISNGNTSCAEDDVVSAAEHLVTDADLLMFGDE
GRGPKLDASESNFGSSVSSFEGDQSNASQHSFTNIGQNCNENTYRTPHDFVEAAAFQSNS
SNFSGLNFRFGVSSSPQISAAAQRRSTRRKLRTKGSLASKPSTIDSLEQPKSSQDTKGMQ
FFCEASKNEDSVKAQQSRDSSTSVALETCETWRTRFV

Transcript Sequence

Transcript ID

Zm00001d037864_T028
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:140130381:140137256:-1 gene:Zm00001d037864 gene_biotype:protein_coding transcript_biotype:protein_coding description:Heat shock protein DnaJ with tetratricopeptide repeat
Sequence

CCGTGTGCCCGTGTGGAAGCGTCCTCGCCTCCTCGGCCCCCTCGAATCACACGCGCCCCG
CCTCATTCGTCCATTCCCCAGCCTTCCAGAGCCCGCCGCCGCCGGCCGCTGCTCCCCCGA
CGCGGGGGAAGCCACCGGCGGTAGCGCTCGCTTCGCCGCGCCAAAAACCTAGCGGCTCCG
AGCTCCCCGCCGCCTCCGTGGCTTATATGGCGAACCCGGGCCTAGGGCTTGGACTCGCGC
CACCGGGCGCCGAGCCCTCCGCCGGAGCGCCGCCCTCTTCACGTCGCGCGCCGCGCTTGG
CCAAACGGCGCCACGCGCCCGCCTCCTCCCGCTCCCGCATGCCGCAGACCTCAGCCGGAA
TATGGAACCCGTTTGGTGGTGGCGGAGGTACGGATAGACAGACCGGAGGCTTTGTGTTTG
GTGCTGCTTCGGCAGTGAGCCAACAGCCTTTGGAGCCAGCAGTGTCAGTAGCTTCACCCA
CTGAGGCGCCCTTCGTGTTTGGGAGCGTGAGGGAGAGCCTGCCTCGGTTTGACGAGGGAT
CGCCCGCTTCATCAAAGCTCCCTGATAAGATGGAGAAGTTGAACCTGCGAACATCAAGTG
AGGTTGACGATGGTCTCGGTCAGGGGAGGGATCGAAAGGATGGAAGTTCGGTATTTGGTG
CTGATATATCTGGTTTGTTTTCTAGTAACAAGGAATCTAATGTGCTCCAGGAGAAGCTTA
CACAGTTGAATTTAGGCCACAAAGAACCCTTGCAAAGTAAGAAGAGGGATAGTGCTAATG
GTGTGCCGCAAGCATTTGTGTTTGGAGGTAATGGAGCTGGGAGTTTTGCTGACTGTAAGA
ACAAAGCCGCCCCTGGTGCACATTCAGATGATCCTAGTTCAGTTCATGGCACTGATGCAA
AAGGTATGGCTGGGAAGTCGATGCAGTTCAATATAGGCAGTCAAGCACCTTCCAGGGGTG
GGGGGATTGATCGTACTAATGGAGCACCAGAAGCTTTCACGTTTCGAAGTACCACATTAA
GTGGTCATGTGGATAATATAAACAATGTTGACTCTGGTGCCAATACCAGTTCTTCCACTG
TTGCTAAATGTGTTTGTGATGCAGATTTTCCTCTGGAAAAGATAACACGGTTGTGTATAG
GAAGTGACATGCCCTTGCATGAGACGAAAAGTGGTTATCAACCCAAAGTGTTTACGTTTG
GAAGTGGAGGAATCCCAGGCGCTGTTTTTGGGAAGGAAACTGGCAGCACATCAGATAGGA
GCAGTGAATTCCTCTCTGCAAATAGCAATACTTCTAGTTCAAGCAGTGATTTTTTCTCTA
CAGCAAATAGCAACGTTTCTAATTCCGCTAATGGCACTTATTGTTTGCCACCAGAGAAGA
CACCAGATTTGAATGCAGGAGACAGAGTCATGTCACAGAGCTTGGAAGGTGATAATTCTA
ATTGTCCAACAGAGACCTTTCTATTTGAAAGAAATGAAACCCGAAGCTCTGTTTCGCACT
CTGCAAGCATAGCCATGGATGACGGTGGGAATTTTGTCAATGATGAAAATACTGACACCT
GTAGTTCAGCTCACAGTACAGTGGAGTGTGCAGGTGCTCTCCCAGAGAAGATGACAAAGT
TAGGTATAGGATGCAGAATTCCACATCATAGCAGGAAAGATGAAACTGCTACCGATCCAC
CAGAAGTATATGTATTTGGATGTAATCTTTCTAGCTTTTCTTCTGCCCAGACTTCAAGTA
AATCGAATGATCGCACGACTCCTGAATTTTGTTTTCAAAGCAAAACAGGGGCAACTTCAG
GATATGGTGCTGTTCCCCAAACCAAAGTTCAGGATTCATACCCATTTACAATTTTGAATA
ATTCATGTACTTTCTCTACTTTTGAGAATGCAGTTCCTGCTTTCAGTTTTGGGACACTGA
ATGCAGAAACAGAAACAGCTCCAGATGATCCTTTTTCTTTTTCTGTCAAACATGATTTGC
CTGGGTATTCCAGAGAGACCTTATTTGGTTTAGACAGTATAAAATCTGCATACAAGGACA
AAAGGGAAGCATGTAAAGGAAAAATGAAAAACAAGAGGCCAACTAGGCTAAAGCAACATG
CTCAGCTCCATCAGGTTATTTCTAAGGAAGCCTGTACCAGTGGAGAAGCATCAGATTTAG
CAGGTGACTGTTCACCAATGGATTGTTCGCCATATCCTGCAGAATCTGAACATGTGCCAA
CAGAGGCATATGTGGCTTCTGATCAGCCCGTTCACATAGGTGATACTGTTATCTCGAACG
GGAACACCAGTTGTGCTGAGGATGATGTAGTTTCTGCAGCCGAGCACTTGGTTACTGATG
CAGACCTACTGATGTTTGGAGATGAAGGTAGAGGACCGAAACTAGATGCATCTGAGAGCA
ATTTTGGTAGCAGCGTTTCTAGTTTTGAAGGAGATCAAAGCAATGCATCACAACATTCTT
TCACTAATATTGGGCAAAACTGTAATGAGAATACCTACAGAACTCCCCATGATTTTGTTG
AGGCTGCTGCTTTTCAATCAAACTCATCAAATTTCAGTGGGCTGAACTTTAGATTCGGTG
TGTCATCCTCTCCACAAATCTCTGCTGCGGCACAAAGACGTAGCACAAGAAGGAAGTTAA
GAACAAAGGGTAGTCTAGCATCGAAACCTTCAACTATCGACTCTTTAGAACAGCCAAAAT
CTTCACAAGATACTAAGGGCATGCAGTTTTTCTGTGAAGCAAGTAAAAATGAAGACTCAG
TGAAAGCGCAACAATCAAGAGATTCTTCTACTTCTGTGGCCTTGGAGACTTGTGAAACCT
GGCGTACTAGGTTTGTGTGAACATGTTTAATTCTATCTTAATATGTCAATTTTCATGACT
TGTATATAATTTTGTATTAACTCATGTGATTACAAATTTACAATTTCATGTACCATAGCT
TGTTGTTTCATTTGTTCCAGTGGAAATAAAGCCTATGCAAATGGACATTTTACTGCTGCA
GAGGATTATTATACCCGTGGAATAAACTCTGTTACCCACAATGGCGTTTCTGGACAATGT
TCCCGTGCATTGATGCTGTGTTACAGCAACCGTGCAGCTACAAGAATGTCACTTGGCATG
ATGTGGGAGGCGCTTCAGGATTGTTTGACTGCTACATCAATTGACCCCACTTTTCTTAAA
GCTAAAGTTAGAGCTGCCAAGTGCCAGCTTGCATTGGGCGATCTTGAAGATGCATCAATG
AGTTACATGTCCTGTTTGAACAGTAACACCGAGAGCTCTGACCCTAAAATATTTGCTGAG
GCTTCTGATGGTTTGGAAGGAGTCAAGGTATCTTGTCATTTTTTGATAGAGCTGTCCTTA
AATGATGTTCACTATATCTAACTTTTACATTCCTATATTGTACATATTTGAATTGATATT
TCTATGTTCTAAAATTTATAAATTATAGTATATATGTATCTGTTCCTGGATGGCTGACCT
TGCCCAAGCCACCCAGGTCATCAGCCATGCACTTGAACTTGCAACAGTAGTTGGTGCTGG
AGAGGTTGCCATGGACGAAATTCTGGAAGTCGGCGTCCAGATAGAGGGCACACTGTTCCT
GGTTGCTAAGGAACTGATTTTTTCAGGGTGAGACAGATAGTGCGAGCATTGTCGCAGCGC
TCCGAATGATGTCCTCGGGGTTGTTGGAGATGGTGTATAGAGCCATGTCAAGATGACACA
GTCCATGCACACCCAGTTCAGGAAGGTGTAGTCGGCACTGACGAGGTCATGGCATTGTAG
AGAGAACTTCCCAAGGACGAGCAGCATCTGGTAGCGTCAGCTGGTGTAGTTGGCAGAGTC
TATGTTGAGGATGGTAGGGGCAACACTCTGAATCTTCTGCATAGCAACAACTTGAGCGTG
CAGATTGGTGATGGCGACAGCCTTGTGTGCGACTGTGCGAGGAGAGTAGCACGGAGGGAC
TGCTGAGGATCACCATTGCTAGGAAGCGACCAGTCGTCGTCGTCGTCGTTGGTAGCAAAC
ATGGAGGAGACATCGACCGCGGTGGCCGCCTCGTGCTCCTGGGCTGCGGCAGCCGCGTGG
GTGGCTTGGTCCTCGAGATGGAGGCGCTCTGCCTCGGTTGCGCGGGTGCGAGCCGCCTCG
CGCTCCTTTGCGGCGCGCATGCTCTCTGCTTCTGCGTGCATGTTCCTTGGTCGCACGGAC
GAGCGCTTCCGCAGCGTGAGCGTGCCCCGCTTCGGTGGGAGACTCAGGCATCAGGGAATA
GAGGGGGTCGTGCTGGTGTTTGCGGCTGAGTATGGTTCAAGAAGGATGTGCAACCACAGG
GGCACGCGAAGAGCAGCGGGAAAAAGAAACCTAGTCTCATGATACCATGAAAGCAATGTA
ATTGCACAAGAAATTAGTAGATTTATTAGGAGGCAATAGACACTGGTACATATATTGGCA
AGGAGGACCCAAGGTTGGTTTATAGACGTATACCACCGTCAGATCTCTTTGTCTAATATA
GTAACAATCACTCTATAATAATCATAATGGGCCAACAGCTCATGCACCTATGTGACTGTC
TAACATCTCTATTTCATTTAAGGTCGATTTTTCTCCATAAATGAGGTTTATCATTCTACC
ACACTCATGTGCTTTTATTACTTCTGCAGAGAGTGACCGATTGGGTATCTCAGTGCAAGG
AATTTCTTGAGAGAAGAACATCTCCTGAAGCAACAAAAGCCTTAGAATTGATCTCCAATG
CATTGCACATATGTCCACATTCGGACAGCGTCAAGGAGATGAAAGCAGAGGCATTGTTGA
TGGTTTGTATTTCTCTCTTTTGGCTCATTTCATGAATTATTAAGAGCACCTATACTTCAT
TGAATTACAAGAGTGTCTATACTAACAAATGTTCAGGGAATATCCGTTGTCATATATTTA
TTTCTTGCTACTAATGTCATCGCTGCACTGAACAGCTACGAAGATATGAAGAAGTGATTC
AACTATGCCAAGAGTCTGTGAATCTGACTGAAAGAAATTCAGTTTTATTCAAAGACAATG
GAGAACCAAAGAATTCCAGAGTCTCTGAACGGATGCAGTTTTCTGGAAGGTATTGGCGGC
CCTACCTCATTTGCAAGTCTTATTTCCTTTCAGGCAAGCTTGATGAGGCTCTTGAATTGT
TAAAGAAACATGAGCAAGTCACACCTGTCAAAGAAAGTGAAGTGAACACATATGAAGAAA
AATTCTCATCATTGTCAGCGACTATAAGAGAACTACTTTCTCTTAAGGTATGCTTTAAAA
TCTCTTTTGTTGCCTCTTCAGTCCTCTTACTGAGTAGCAGTGACAGAAATTTGGTTATGT
GTTTTTATCATACAATACTTCCCATTTTATGTAAATATTTGCTCTCCTTTTGATGTGCAT
GTGTAGTCCAACATTAATCTTCTCATGGAGATTAAGAACTAGCGTGTGGTTGATATAAAA
ATACCCTAGCATATGGCATCTCTTTGTGAGACATGTTGCATAAGTTTCTAGTGATGATAT
GAGCCAGTGACATGCGTGTTTGTGTACTCTTTTTAATGTGATGACTGATGATGTGCAGCT
CTCCCACAAATTCGAGGAAAGAAATAGTTTCCAAATGATTGTTCTTTTTAAATGTCCATA
ATTTCCCAATTCCCAATTTACCTTGTCTGTTTAGTTTTGCTCTAAAAGTGGGAACATGTT
GAGCTTCATTTTTTTTGAAAGCTGAGAGCTGCAGTTCATTGAAATAGAGAGAAATAGAAG
GTCCCCATACAACCCCCACCACCTCTCATACGGGGACCAAGTATGAGAGGCGGCGAACAT
ACATTCTGAAAAAACAAAACAACACAGTACTTGACCTGACCAAAAAACCTAACAGCTAGG
TTGATGTTGGGCATTGGAGCTTCTTAGCTCCCGATATACACTAAAGGCTGTGCTCATCCT
TGAGAATCCCCATGATCGAGTTGACTGAAGGAGAGGAGCTTCATGTCACTCTTCTTCTGA
GCATAGGATATAATGGTGACAGAAAGTGCACATTGCTTAATAAAAACATAAAAAGTTGAA
ATAGCTAAATATCCATCTATTTTTAATGTTCAGTACAAAATCACAGAATAAACCTGAATA
GACCTTGAGAATTGAGCTTTGCCGCTCCATCTAGTTGCATTCAGGATTTCCATCCATCCC
TTTTTTTGCTGACATGTGACCACATGATTCACAAATCCATGATGCATGGTTTAGCAAACA
CTAATGGTTTAATCTTTTTTTCTCGAACGCGCATGAGAGCTGCGCATCATTATATTAAGA
AGAAAAAAGGTCCAACATAGAC