Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d037786_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:6:137825036:137834294:1 gene:Zm00001d037786 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:NLP-transcription factor 8 description:Protein NLP6
Sequence

ATGGAGTTCGACTTCGACTCCCATGGCGGCGACGCTTGGCTGCTCGACGCCATGTCCACG
TCGCTCCACTTTTCGGCCGTTTCGCCCCCGGTGCCGTCGCCGTGGCCGTGCGGCGACCCG
CATCATCCTTCCATGTGGCTGGACACGGTTGCCCTGCAAGACGACGGCCCGAGCGTCCCC
GCCGAGAAATCTGAAATATCCAAGAAATGTGAACATTTAAATGGTAAATGCCAGGTTCAT
CTTTCCCTGGTTGATGGTTGTTCTGATAGCTCATATTTCTTGAAGGAAAAGCTCACAGTA
GCTCTCATGTACTTCAAGGAGTCTACCAAGCAGCATTTGTTGGTTCAAGTTTGGGTGCCT
ATCAGGAAAGGGGACCACTACATGCTAAGCACTTCAGGGCAGCCCTTTGTGCTTGACGAA
CAGAGCATCGGACTTCTTGATTATAGGGCTGTGTCCATGATGTATACGTTCGCTGTGGAT
GGGGATAGTGTCGAAGAATTGGGTCTACCTGGACGCGTATACAAGCAGAGGCTACCTGAA
TGGACGCCCGATGTGCAGTACTACAGCAGTATTGAATATGCACGGCTTAACCATGCAATA
AGTTACGACGTACATGGTACTGTTGCCTTGCCTGTGTTTGATTCTTCCATGAAGTCATGC
ATCGCTGTTGTTGAACTTATAATGACATCAAAGAAAGTAAACTATGCAAGAGAGGTTGGT
GAAGTCTCCAAAGCTCTTGAGGCCGTGAATCTTAAAAGCACTGAAGTTATCGAACATCCA
TATGTCCAGATATTTAATGAAGGACATCAAAATGTTCTTGTAGAGATGTTGGAAATCATA
ACAGTAATTTGTGAAGAGCTCAAACTACCCATAGCTCAGACTTGGGTGCCATGCAAATAC
CAAAATTTATTGATACATTGTGGTGGTGAAAATAAGAGTTGCTTCGATATTCATGAAAGT
TGTGCCCAAGAACTATGCATGTCAACAAGTGCTGTTATGTTTCATATTATCGATGCTCAT
ATGTGGGGCTTCCGAGATGCCTGTGTAGAGCACCACCTGAAGAAGGGACAAGGGGTTTCT
GGAAAGGCTTTTATCCTACGTAGGCCTTGCTTTACGAAAGATGTTACTAGATTCTCTAAA
ATGGAGTACCCCCTTGTTCACTATGCTCGTATGTTTGGATTAGCTGGCTGTTTTTCGATA
TGCTTGCAAAGTGCTTATAATAGAAATGAGGACTATGTATTGGAGTTCTTCTTGCCACCT
GATTGTAGAGAAGATGGTGAGCAAAAGGTTCTTTTGGACTCCATCTTAGCTCTGCTGAGA
CAGTATCTTAATAGATTGCAGGTAGCCACTGACGAAGGCTCAAATGAAGTTTACCTTCAA
GTCGATGCTATTACTATAATTGAAAATGGAGATATAAAGAATGCACATGTACAACATATG
AACTGTGAAGGTGGCATTCATGCATCAGATGAGAGAAATATGCATGTAATCCATGAGTCT
GACAGCCAGAAAAGAATATCCCCAACAGAATCTGAAACATGTCCATCGCCTGATAACACC
AAATGCAATGACAAATTATTTGCTAGACAAAATGGTGGATGTATCTCAGATTCTTTATTG
CTTGAAAACAATAGCAAGCATAGTGGAAGGAGACAAGGAAAAGAAGAAAAAACATTCAGT
TTAGAGGTTATTCAACAGTATTTTACTGGAAGCTTGAAGAATGCAGCAAAAAGTCTTGGA
GTATGTCCTACAACAATGAAGCGCATTTGTAGGCAACATGGTATTTCTCGCTGGCCATCT
CGACAAATCAGCAAGGTTAACCGTACTGTTTCAAAATTAAAGAAGGTAATTGAATCTGTT
GAAGGGCATGAGGGTGCATTTACTCTCACATCTGTCACAGGTCCTCTTCCTGTTGCTTTT
GGTCCATCCAATCCTATCAGTATAAAGAACCAAAGCCAAATTAATGTTTCTGGACTTCCC
ATTCCTTCTGTTCAAGAAAACAGAGACTCATCCTCACAGAGTAAGTTACTAGAAAATGAT
ATTCACCGAAGCACTCTTGTTCCCCAGAAAAGCTTTCTAGCTAATATCAACAGACAGATT
GAAGCAGAGAAAGCTTCCAACTCGAGAAATTCATCGAAAGATTGTAGAACACATTCTGGG
AGATCAGAAGAATCCTACCCTGTTAGCCCTGCAAACATGACATTTGTTTCAACACTCCTA
GAACCGCAACAAAACATGTACATACAAGATGGCTTCACAAAAGAGTCTTTTCAGAAAGAG
GACCTGCGGTTTCATGGGATGTTTGTTAACGGATCAGGAAGCTTGAAAGATTGCATGAAC
CACATCACTTCTGCAGTTAACGGAACGATTATAGGGCATCCAGGAAGTCTCACGACTGCA
CAAAATTCAGGGATAATAACATGTCCAGGCAGTCTCATCAGTGCGCAGAATTCAAGGATA
GTAACAGTAAAGGCACGCTACAAGGAAGACTTGTTAAGGTTTCGGTTCCCATGTTCTGGA
AGCTTTATCACTTTGAAAGATGAGGTGGCCAAAAGAATACAAATGGATGGTGTTCTTTTT
GACATCAAGTATCTTGATGATGATCATGAATGGGTGAAGTTGACATGCGACACCGACTTA
GAAGAGTGCATGGAGATCTCTCGGGCATCTGGTAGCAACGTTTTGAGGCTGCTGGTCACT
GACATTGCTCCAGTCCTTGGGAGTTCTTGTGGTAGCACTGGATGA

Peptide Sequence

PEP ID

Zm00001d037786_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:6:137825036:137834294:1 gene:Zm00001d037786 transcript:Zm00001d037786_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:NLP-transcription factor 8 description:Protein NLP6
Sequence

MEFDFDSHGGDAWLLDAMSTSLHFSAVSPPVPSPWPCGDPHHPSMWLDTVALQDDGPSVP
AEKSEISKKCEHLNGKCQVHLSLVDGCSDSSYFLKEKLTVALMYFKESTKQHLLVQVWVP
IRKGDHYMLSTSGQPFVLDEQSIGLLDYRAVSMMYTFAVDGDSVEELGLPGRVYKQRLPE
WTPDVQYYSSIEYARLNHAISYDVHGTVALPVFDSSMKSCIAVVELIMTSKKVNYAREVG
EVSKALEAVNLKSTEVIEHPYVQIFNEGHQNVLVEMLEIITVICEELKLPIAQTWVPCKY
QNLLIHCGGENKSCFDIHESCAQELCMSTSAVMFHIIDAHMWGFRDACVEHHLKKGQGVS
GKAFILRRPCFTKDVTRFSKMEYPLVHYARMFGLAGCFSICLQSAYNRNEDYVLEFFLPP
DCREDGEQKVLLDSILALLRQYLNRLQVATDEGSNEVYLQVDAITIIENGDIKNAHVQHM
NCEGGIHASDERNMHVIHESDSQKRISPTESETCPSPDNTKCNDKLFARQNGGCISDSLL
LENNSKHSGRRQGKEEKTFSLEVIQQYFTGSLKNAAKSLGVCPTTMKRICRQHGISRWPS
RQISKVNRTVSKLKKVIESVEGHEGAFTLTSVTGPLPVAFGPSNPISIKNQSQINVSGLP
IPSVQENRDSSSQSKLLENDIHRSTLVPQKSFLANINRQIEAEKASNSRNSSKDCRTHSG
RSEESYPVSPANMTFVSTLLEPQQNMYIQDGFTKESFQKEDLRFHGMFVNGSGSLKDCMN
HITSAVNGTIIGHPGSLTTAQNSGIITCPGSLISAQNSRIVTVKARYKEDLLRFRFPCSG
SFITLKDEVAKRIQMDGVLFDIKYLDDDHEWVKLTCDTDLEECMEISRASGSNVLRLLVT
DIAPVLGSSCGSTG

Transcript Sequence

Transcript ID

Zm00001d037786_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:6:137825036:137834294:1 gene:Zm00001d037786 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:NLP-transcription factor 8 description:Protein NLP6
Sequence

AGCATACATGAGTGTACAAGACTCAGGCACTCCCTTCGCTCTTCCTAAGCACCTGGTAGC
CTGCTCGTCTCTCGTGCGGCGCCGAGTCTAGCCTCATTCTCAACAATCCATCTCCACAGC
CACCGCCGCGCCTGCCCTGGCAAATGGAGTTCGACTTCGACTCCCATGGCGGCGACGCTT
GGCTGCTCGACGCCATGTCCACGTCGCTCCACTTTTCGGCCGTTTCGCCCCCGGTGCCGT
CGCCGTGGCCGTGCGGCGACCCGCATCATCCTTCCATGTGGCTGGACACGGTTGCCCTGC
AAGACGACGGCCCGAGCGTCCCCGCCGAGAAATCTGAAATATCCAAGAAATGTGAACATT
TAAATGGTAAATGCCAGGTTCATCTTTCCCTGGTTGATGGTTGTTCTGATAGCTCATATT
TCTTGAAGGAAAAGCTCACAGTAGCTCTCATGTACTTCAAGGAGTCTACCAAGCAGCATT
TGTTGGTTCAAGTTTGGGTGCCTATCAGGAAAGGGGACCACTACATGCTAAGCACTTCAG
GGCAGCCCTTTGTGCTTGACGAACAGAGCATCGGACTTCTTGATTATAGGGCTGTGTCCA
TGATGTATACGTTCGCTGTGGATGGGGATAGTGTCGAAGAATTGGGTCTACCTGGACGCG
TATACAAGCAGAGGCTACCTGAATGGACGCCCGATGTGCAGTACTACAGCAGTATTGAAT
ATGCACGGCTTAACCATGCAATAAGTTACGACGTACATGGTACTGTTGCCTTGCCTGTGT
TTGATTCTTCCATGAAGTCATGCATCGCTGTTGTTGAACTTATAATGACATCAAAGAAAG
TAAACTATGCAAGAGAGGTTGGTGAAGTCTCCAAAGCTCTTGAGGCCGTGAATCTTAAAA
GCACTGAAGTTATCGAACATCCATATGTCCAGATATTTAATGAAGGACATCAAAATGTTC
TTGTAGAGATGTTGGAAATCATAACAGTAATTTGTGAAGAGCTCAAACTACCCATAGCTC
AGACTTGGGTGCCATGCAAATACCAAAATTTATTGATACATTGTGGTGGTGAAAATAAGA
GTTGCTTCGATATTCATGAAAGTTGTGCCCAAGAACTATGCATGTCAACAAGTGCTGTTA
TGTTTCATATTATCGATGCTCATATGTGGGGCTTCCGAGATGCCTGTGTAGAGCACCACC
TGAAGAAGGGACAAGGGGTTTCTGGAAAGGCTTTTATCCTACGTAGGCCTTGCTTTACGA
AAGATGTTACTAGATTCTCTAAAATGGAGTACCCCCTTGTTCACTATGCTCGTATGTTTG
GATTAGCTGGCTGTTTTTCGATATGCTTGCAAAGTGCTTATAATAGAAATGAGGACTATG
TATTGGAGTTCTTCTTGCCACCTGATTGTAGAGAAGATGGTGAGCAAAAGGTTCTTTTGG
ACTCCATCTTAGCTCTGCTGAGACAGTATCTTAATAGATTGCAGGTAGCCACTGACGAAG
GCTCAAATGAAGTTTACCTTCAAGTCGATGCTATTACTATAATTGAAAATGGAGATATAA
AGAATGCACATGTACAACATATGAACTGTGAAGGTGGCATTCATGCATCAGATGAGAGAA
ATATGCATGTAATCCATGAGTCTGACAGCCAGAAAAGAATATCCCCAACAGAATCTGAAA
CATGTCCATCGCCTGATAACACCAAATGCAATGACAAATTATTTGCTAGACAAAATGGTG
GATGTATCTCAGATTCTTTATTGCTTGAAAACAATAGCAAGCATAGTGGAAGGAGACAAG
GAAAAGAAGAAAAAACATTCAGTTTAGAGGTTATTCAACAGTATTTTACTGGAAGCTTGA
AGAATGCAGCAAAAAGTCTTGGAGTATGTCCTACAACAATGAAGCGCATTTGTAGGCAAC
ATGGTATTTCTCGCTGGCCATCTCGACAAATCAGCAAGGTTAACCGTACTGTTTCAAAAT
TAAAGAAGGTAATTGAATCTGTTGAAGGGCATGAGGGTGCATTTACTCTCACATCTGTCA
CAGGTCCTCTTCCTGTTGCTTTTGGTCCATCCAATCCTATCAGTATAAAGAACCAAAGCC
AAATTAATGTTTCTGGACTTCCCATTCCTTCTGTTCAAGAAAACAGAGACTCATCCTCAC
AGAGTAAGTTACTAGAAAATGATATTCACCGAAGCACTCTTGTTCCCCAGAAAAGCTTTC
TAGCTAATATCAACAGACAGATTGAAGCAGAGAAAGCTTCCAACTCGAGAAATTCATCGA
AAGATTGTAGAACACATTCTGGGAGATCAGAAGAATCCTACCCTGTTAGCCCTGCAAACA
TGACATTTGTTTCAACACTCCTAGAACCGCAACAAAACATGTACATACAAGATGGCTTCA
CAAAAGAGTCTTTTCAGAAAGAGGACCTGCGGTTTCATGGGATGTTTGTTAACGGATCAG
GAAGCTTGAAAGATTGCATGAACCACATCACTTCTGCAGTTAACGGAACGATTATAGGGC
ATCCAGGAAGTCTCACGACTGCACAAAATTCAGGGATAATAACATGTCCAGGCAGTCTCA
TCAGTGCGCAGAATTCAAGGATAGTAACAGTAAAGGCACGCTACAAGGAAGACTTGTTAA
GGTTTCGGTTCCCATGTTCTGGAAGCTTTATCACTTTGAAAGATGAGGTGGCCAAAAGAA
TACAAATGGATGGTGTTCTTTTTGACATCAAGTATCTTGATGATGATCATGAATGGGTGA
AGTTGACATGCGACACCGACTTAGAAGAGTGCATGGAGATCTCTCGGGCATCTGGTAGCA
ACGTTTTGAGGCTGCTGGTCACTGACATTGCTCCAGTCCTTGGGAGTTCTTGTGGTAGCA
CTGGATGATTTTGAATGTTTATGAATCGGCATAGTAGTATAATGCAGTGGCCAAATCTAG
CTAGCTGATATTTAGGCTAGCCGCTTCGGTTCTTAGGTACATCACCATCTTTTACAGGTA
TTTCTCATTTTGTGTAGGGAAATCTCAGGTATAAATCATTTCCTTTGAAACAATGGAGGT
ATTTGGTTTGAGGAATCACTTCATTC